Rroxscaffold_3G00265700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000526
Physical Location & Seq
Reverse (-)
59099280 .. 59100982
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265700.1

Sequence Viewer

Length: 948 bp
ATGACTACGCCGAAAGAGCACATAGAAGAGATAAGGAGGAAAAAGTTTTCCATAGGAGGGGAACTCAACCCTCTAACTGAGGATCTTCATCAGGCTGTTAAGAATCTCTCAGCAGAGCTCTATGCTAAAGACGTGCATTTCCTGATGGAACTCATTCAGAATGCTGAGGACAATGAGTATTCGGATGGAGTAGATCCATCACTTGAGTTTGTCATAACCTCCCAGGACATAAAGGGCACGGGGGCTCCTGCTACATTGGTGGTTTTCAATAATGAGAAGGGTTTCTCTGCAAAAAACGTAGACTCCATTTGCAGTGTTGGAAGGTCCACAAAGAAAGGCAACAGGAAGCGTGGTTATATTGGGGAGAAAGGAATTGGGTTCAAAAGTGTGTTTCTGATCACGGCTCAGCCTTACATCTTCAGTAATGGCTATCAGATCAGATTCAGTGAAGAGCCTTGTGTGCATTGCAATGTCGGATACATAGTTCCTGAATGGGTCAATCAGAACCCAACTCTATCTGACATCAAACAGATTTATGGTTCCAATGCTGCCCTTCCTACCACTACACTGATTTTACCTCCAAAGGCCGAAAAGGTCAAGCCAGTGAAACAGCAGCTCTCAAGCATTCATCCTGAAGTTCTCTTATTTCTGTCAAAGATTAAGCGGCTCTCTGTCAGGGAAGACAATGAGGATCCAAGGAAGAATACAGTAACTGCAATTGAGATAGAAAGCCAAACTGATTTTGTGACCAGGAAGAATATTGATGCACAATCCTACACACTCCGCCTTTCTGCAGAAGAAAATGATGACAATGATTCCGAAAGGGAATGCAGTTACTACATGTGGAAACAAAACTTTCCTGTCAGGCAGGAATTCAGAGTTGAGAGGAGAATGGAGGTGGATGAGTGGGTGATCACTCTTGCATTTCCAAATGGAGAACGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.89

Weight (kDa)

5.59

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SACS PF25794 27 - 143 9.2e-13 Sacsin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AciI CCGC 2 cut(s) 664, 784
AclWI GGATC 4 cut(s) 90, 188, 686, 699
AcsI RAATTY 1 cut(s) 872
AcuI CTGAAG 2 cut(s) 403, 654
AfiI CCNNNNNNNGG 1 cut(s) 57
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 2 cut(s) 268, 382
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 222, 749
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 2 cut(s) 118, 616
AluI AGCT 2 cut(s) 118, 616
Alw21I GWGCWC 2 cut(s) 21, 120
AlwI GGATC 4 cut(s) 90, 188, 686, 699
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 2 cut(s) 548, 613
ApoI RAATTY 1 cut(s) 872
Asp700I GAANNNNTTC 2 cut(s) 153, 281
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 922
AvaII GGWCC 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 691
BanII GRGCYC 2 cut(s) 120, 247
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 21, 120
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 535, 625
BccI CCATC 3 cut(s) 139, 179, 205
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 224, 751
BciVI GTATCC 1 cut(s) 470
BclI TGATCA 2 cut(s) 396, 912
BfmI CTRYAG 1 cut(s) 792
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 3 cut(s) 549, 614, 665
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 3 cut(s) 550, 615, 666
Bme1390I CCNGG 2 cut(s) 224, 751
Bme18I GGWCC 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 3 cut(s) 246, 541, 693
BmrFI CCNGG 2 cut(s) 224, 751
BmsI GCATC 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 48, 80
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 224, 604
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 222, 695
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 602
Bse3DI GCAATG 2 cut(s) 463, 475
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 224, 751
BseDI CCNNGG 2 cut(s) 222, 695
BseGI GGATG 3 cut(s) 190, 628, 907
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 2 cut(s) 463, 475
BseMII CTCAG 4 cut(s) 69, 123, 156, 419
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 901
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 535, 625
BshFI GGCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 21, 120
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 3 cut(s) 166, 624, 833
BsnI GGCC 1 cut(s) 587
Bsp1286I GDGCHC 4 cut(s) 21, 120, 239, 247
Bsp143I GATC 6 cut(s) 82, 193, 396, 435, 691, 912
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 2 cut(s) 664, 784
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 4 cut(s) 70, 122, 157, 418
BspLI GGNNCC 3 cut(s) 246, 541, 693
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 4 cut(s) 90, 188, 686, 699
BspQI GCTCTTC 1 cut(s) 444
BsrDI GCAATG 2 cut(s) 463, 475
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 222, 695
BssMI GATC 6 cut(s) 82, 193, 396, 435, 691, 912
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 224, 751
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 2 cut(s) 21, 444
BstDEI CTNAG 4 cut(s) 78, 109, 165, 405
BstF5I GGATG 3 cut(s) 190, 628, 907
BstKTI GATC 6 cut(s) 85, 196, 399, 438, 694, 915
BstMBI GATC 6 cut(s) 82, 193, 396, 435, 691, 912
BstMWI GCNNNNNNNGC 2 cut(s) 16, 460
BstNI CCWGG 2 cut(s) 224, 751
BstNSI RCATGY 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 222, 749
BstSFI CTRYAG 1 cut(s) 792
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 535, 625
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 3 cut(s) 82, 193, 691
BstYI RGATCY 3 cut(s) 82, 193, 691
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 587
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 3 cut(s) 190, 628, 907
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 4 cut(s) 319, 451, 566, 609
CaiI CAGNNNCTG 1 cut(s) 713
Cfr13I GGNCC 1 cut(s) 324
CviAII CATG 1 cut(s) 841
DdeI CTNAG 4 cut(s) 78, 109, 165, 405
DpnI GATC 6 cut(s) 84, 195, 398, 437, 693, 914
DpnII GATC 6 cut(s) 82, 193, 396, 435, 691, 912
Eam1104I CTCTTC 2 cut(s) 21, 444
EarI CTCTTC 2 cut(s) 21, 444
EciI GGCGGA 1 cut(s) 773
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 695
Eco24I GRGCYC 2 cut(s) 120, 247
Eco47I GGWCC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 403, 654
EcoICRI GAGCTC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 872
EcoRII CCWGG 2 cut(s) 222, 749
EcoT14I CCWWGG 1 cut(s) 695
EcoT38I GRGCYC 2 cut(s) 120, 247
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 1 cut(s) 844
FaiI YATR 9 cut(s) 23, 53, 123, 215, 230, 357, 482, 537, 842
FatI CATG 1 cut(s) 840
FbaI TGATCA 2 cut(s) 396, 912
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 549, 614, 665
FokI GGATG 3 cut(s) 197, 615, 914
FriOI GRGCYC 2 cut(s) 120, 247
Fsp4HI GCNGC 3 cut(s) 549, 614, 665
GluI GCNGC 3 cut(s) 549, 614, 665
HaeIII GGCC 1 cut(s) 587
Hin1II CATG 1 cut(s) 844
HinfI GANTC 4 cut(s) 103, 302, 441, 815
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 2 cut(s) 301, 327
Hpy188III TCNNGA 3 cut(s) 142, 488, 632
Hpy8I GTNNAC 2 cut(s) 301, 327
HpyAV CCTTC 3 cut(s) 271, 315, 563
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 3 cut(s) 132, 297, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 460
HpyF3I CTNAG 4 cut(s) 78, 109, 165, 405
HpySE526I ACGT 3 cut(s) 132, 297, 940
Hsp92II CATG 1 cut(s) 844
Ksp22I TGATCA 2 cut(s) 396, 912
Kzo9I GATC 6 cut(s) 82, 193, 396, 435, 691, 912
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 250
Lsp1109I GCAGC 2 cut(s) 535, 625
LweI GCATC 1 cut(s) 754
MaeII ACGT 3 cut(s) 132, 297, 940
MaeIII GTNAC 3 cut(s) 709, 745, 833
MalI GATC 6 cut(s) 84, 195, 398, 437, 693, 914
MboI GATC 6 cut(s) 82, 193, 396, 435, 691, 912
MboII GAAGA 8 cut(s) 38, 77, 409, 461, 692, 712, 766, 809
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 3 cut(s) 82, 193, 691
MhlI GDGCHC 4 cut(s) 21, 120, 239, 247
MluCI AATT 3 cut(s) 372, 717, 872
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 298, 454
MroXI GAANNNNTTC 2 cut(s) 153, 281
MseI TTAA 2 cut(s) 99, 660
MslI CAYNNNNRTG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 224, 751
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 3 cut(s) 166, 624, 833
MvaI CCWGG 2 cut(s) 224, 751
MwoI GCNNNNNNNGC 2 cut(s) 16, 460
NdeII GATC 6 cut(s) 82, 193, 396, 435, 691, 912
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 3 cut(s) 246, 541, 693
NmuCI GTSAC 1 cut(s) 745
NspI RCATGY 1 cut(s) 844
PciI ACATGT 1 cut(s) 840
PciSI GCTCTTC 1 cut(s) 444
PctI GAATGC 3 cut(s) 166, 624, 833
PdmI GAANNNNTTC 2 cut(s) 153, 281
PfeI GAWTC 3 cut(s) 103, 441, 815
PkrI GCNGC 3 cut(s) 550, 615, 666
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PscI ACATGT 1 cut(s) 840
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 222, 749
PspGI CCWGG 2 cut(s) 222, 749
PspN4I GGNNCC 3 cut(s) 246, 541, 693
PspPI GGNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 3 cut(s) 82, 193, 691
RseI CAYNNNNRTG 1 cut(s) 468
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 99, 660
SatI GCNGC 3 cut(s) 549, 614, 665
Sau3AI GATC 6 cut(s) 82, 193, 396, 435, 691, 912
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 224, 751
SduI GDGCHC 4 cut(s) 21, 120, 239, 247
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 1 cut(s) 792
SinI GGWCC 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 203, 619
SmoI CTYRAG 2 cut(s) 203, 619
Sse9I AATT 3 cut(s) 372, 717, 872
SsiI CCGC 2 cut(s) 664, 784
SspI AATATT 1 cut(s) 760
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 222, 749
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 3 cut(s) 135, 300, 943
TasI AATT 3 cut(s) 372, 717, 872
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 3 cut(s) 103, 441, 815
Tru1I TTAA 2 cut(s) 99, 660
Tru9I TTAA 2 cut(s) 99, 660
TscAI CASTG 4 cut(s) 319, 451, 573, 609
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 2 cut(s) 548, 613
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 2 cut(s) 77, 617
TspRI CASTG 4 cut(s) 319, 451, 573, 609
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 872
XceI RCATGY 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 153, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.