Rroxscaffold_1G00064000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000526
Physical Location & Seq
Reverse (-)
85852988 .. 85854792
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064000.1

Sequence Viewer

Length: 327 bp
ATGAAATTTGTGTTGACCAAGGAAGACGTAACGAGAGACCGGAGCACCAGCTACTCGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTACCGGCCTCTACAACATTGCTATTTCTGGTCTCAATGATGCCTTGTGGGAAAGAATTCATTGCCTGTTGGAAGCAAGGAAGATGGTCTTTATATTTGAAGTTGGATTCATTCGTCCATTCAGTTATGCTCAAATACAGCCAGAAAAATTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.65

Weight (kDa)

6.73

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 1 cut(s) 111
AcsI RAATTY 3 cut(s) 5, 225, 317
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 3 cut(s) 67, 161, 269
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 3 cut(s) 30, 136, 206
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 3 cut(s) 5, 225, 317
Asp700I GAANNNNTTC 2 cut(s) 225, 318
Asp718I GGTACC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 2 cut(s) 127, 247
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 30, 136, 206
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 30
BsaI GGTCTC 2 cut(s) 30, 206
BsaJI CCNNGG 2 cut(s) 18, 87
BsaWI WCCGGW 1 cut(s) 39
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 2 cut(s) 186, 229
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 18, 87
BseMI GCAATG 2 cut(s) 186, 229
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 2 cut(s) 40, 174
BsmAI GTCTC 3 cut(s) 30, 136, 206
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 2 cut(s) 30, 206
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 2 cut(s) 30, 206
BsrDI GCAATG 2 cut(s) 186, 229
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 18, 87
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 156
BstMAI GTCTC 3 cut(s) 30, 136, 206
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 51, 81, 177, 310
CviKI_1 RGCY 4 cut(s) 51, 81, 177, 310
CviQI GTAC 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 2 cut(s) 30, 206
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 100
FaiI YATR 4 cut(s) 98, 116, 263, 297
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 112
HaeIII GGCC 1 cut(s) 177
HapII CCGG 2 cut(s) 40, 174
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 101, 276
HpaII CCGG 2 cut(s) 40, 174
Hpy166II GTNNAC 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 100
KpnI GGTACC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 7 cut(s) 53, 61, 73, 100, 183, 187, 248
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 3 cut(s) 35, 173, 262
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 4 cut(s) 5, 156, 225, 317
MmeI TCCRAC 2 cut(s) 219, 253
MnlI CCTC 2 cut(s) 144, 188
MroXI GAANNNNTTC 2 cut(s) 225, 318
MseI TTAA 1 cut(s) 155
MspI CCGG 2 cut(s) 40, 174
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 172
PdmI GAANNNNTTC 2 cut(s) 225, 318
PfeI GAWTC 2 cut(s) 101, 276
PkrI GCNGC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 47
SetI ASST 3 cut(s) 30, 53, 155
SfaNI GCATC 1 cut(s) 199
Sse9I AATT 4 cut(s) 5, 156, 225, 317
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 30
TasI AATT 4 cut(s) 5, 156, 225, 317
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 2 cut(s) 101, 276
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 17, 87, 218, 268
XapI RAATTY 3 cut(s) 5, 225, 317
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 94
XmnI GAANNNNTTC 2 cut(s) 225, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.