Rroxscaffold_3G00265460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000526
Physical Location & Seq
Forward (+)
58855129 .. 58859894
4766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265460.1

Sequence Viewer

Length: 474 bp
ATGCTCTATCCTACACTCCATCCTTCTGCCAAAAAAGGTAATGACAATGCTGCTGAGAGAGAATGCAGTTATTTTATGTGGAAACAAAAGTTCCCTGTTGGGAAAAAATTCAGAACTGCGAGGAGATTTGAGGTTGATGAGTGGGAGATCACTCTGGCATTTCCAAATGGAGATCGACTTCATAGAGGAATGAACTCATCACCAAGGATTTATTTATTCTTTCCCACGCAAGTAGTGAAGAATTTTCCCTTCATTATTCAAGCAGAGTTTCTACTTACATCATTGAGAGAAACAATTCTCCTAGACAACAAGTGGAATCAGAGTATTCTCAAAGAGGATGCCAAATTGAACATTTTTACGCTGGTAGATGGAGCTCGGCCATATGAGAGTGTGGATGAGGAAGGTATGGAGGATTCAACCCACCTCCGGGGTCATGGCGGTTGGCCGAAATCAACCGTACGTTCTCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.27

Weight (kDa)

8.55

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 438
AcoI YGGCCR 2 cut(s) 377, 443
AcsI RAATTY 2 cut(s) 107, 241
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 426, 427
AgsI TTSAA 3 cut(s) 260, 349, 417
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw21I GWGCWC 1 cut(s) 376
AoxI GGCC 2 cut(s) 377, 443
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 107, 241
Asp700I GAANNNNTTC 2 cut(s) 107, 294
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 192
BanII GRGCYC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 27, 362
BcnI CCSGG 1 cut(s) 428
BfaI CTAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 203, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 427
BseDI CCNNGG 2 cut(s) 203, 427
BseGI GGATG 3 cut(s) 19, 343, 400
BseLI CCNNNNNNNGG 2 cut(s) 426, 427
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 379, 445
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 427
BsiWI CGTACG 1 cut(s) 457
BslI CCNNNNNNNGG 2 cut(s) 426, 427
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 379, 445
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 147, 172
BspACI CCGC 1 cut(s) 438
BspANI GGCC 2 cut(s) 379, 445
BspCNI CTCAG 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 203, 427
BssMI GATC 2 cut(s) 147, 172
BssT1I CCWWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 19, 343, 400
BstKTI GATC 2 cut(s) 150, 175
BstMBI GATC 2 cut(s) 147, 172
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 379, 445
BtsCI GGATG 3 cut(s) 19, 343, 400
Csp6I GTAC 1 cut(s) 458
CviAII CATG 1 cut(s) 434
CviJI RGCY 3 cut(s) 374, 379, 445
CviKI_1 RGCY 3 cut(s) 374, 379, 445
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 149, 174
DpnII GATC 2 cut(s) 147, 172
EaeI YGGCCR 2 cut(s) 377, 443
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 437
FaiI YATR 6 cut(s) 77, 183, 382, 384, 407, 435
FatI CATG 1 cut(s) 433
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 3 cut(s) 6, 350, 407
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 379, 445
HapII CCGG 1 cut(s) 427
Hin1II CATG 1 cut(s) 437
HinfI GANTC 2 cut(s) 316, 413
HpaII CCGG 1 cut(s) 427
HphI GGTGA 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 113, 321
HpyAV CCTTC 3 cut(s) 33, 259, 395
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 1 cut(s) 437
Kzo9I GATC 2 cut(s) 147, 172
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 4 cut(s) 108, 140, 347, 440
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 460
MalI GATC 2 cut(s) 149, 174
MboI GATC 2 cut(s) 147, 172
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 4 cut(s) 107, 241, 294, 344
MnlI CCTC 7 cut(s) 114, 124, 179, 328, 391, 403, 434
MroXI GAANNNNTTC 2 cut(s) 107, 294
MseI TTAA 1 cut(s) 472
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 428
Mva1269I GAATGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 147, 172
NlaIII CATG 1 cut(s) 437
NmeAIII GCCGAG 1 cut(s) 355
PctI GAATGC 1 cut(s) 68
PdmI GAANNNNTTC 2 cut(s) 107, 294
PfeI GAWTC 2 cut(s) 316, 413
Pfl23II CGTACG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 376
PspLI CGTACG 1 cut(s) 457
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 472
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 147, 172
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 376
SetI ASST 6 cut(s) 40, 135, 376, 406, 426, 463
SfaNI GCATC 1 cut(s) 328
Sse9I AATT 4 cut(s) 107, 241, 294, 344
SsiI CCGC 1 cut(s) 438
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 175
TasI AATT 4 cut(s) 107, 241, 294, 344
TfiI GAWTC 2 cut(s) 316, 413
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 170, 206, 241
XapI RAATTY 2 cut(s) 107, 241
XmnI GAANNNNTTC 2 cut(s) 107, 294
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.