Rh4BG208500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000526
Physical Location & Seq
Forward (+)
35942159 .. 35943450
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG208500.1

Sequence Viewer

Length: 246 bp
ATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTACCGGCCTCTACAACATTGCTATTTCTGGTCTCAATGATGCCTTGTGGGAAAGAATTCATTGCCTGGTGCTGTGGAGATGCGCTGGGTTGATACGTACTTTCCATTTACCAATCCATCATTTGAACTTGAGATTTTCTTTCAGAATGGCATGTATCCAGTTGTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.46

Weight (kDa)

8.91

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 2 cut(s) 76, 172
AgsI TTSAA 2 cut(s) 65, 199
AjnI CCWGG 1 cut(s) 138
Alw26I GTCTC 2 cut(s) 40, 110
AoxI GGCC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 74
BccI CCATC 2 cut(s) 31, 198
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 40, 110
BfuI GTATCC 1 cut(s) 239
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 103, 143
BpuEI CTTGAG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 90, 133
BseBI CCWGG 1 cut(s) 140
BseMI GCAATG 2 cut(s) 90, 133
BseNI ACTGG 1 cut(s) 232
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 40, 110
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 110
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 90, 133
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 170
BstHHI GCGC 1 cut(s) 158
BstMAI GTCTC 2 cut(s) 40, 110
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 170
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 81
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 77
Csp6I GTAC 2 cut(s) 75, 171
CviAII CATG 1 cut(s) 225
CviJI RGCY 1 cut(s) 81
CviKI_1 RGCY 1 cut(s) 81
CviQI GTAC 2 cut(s) 75, 171
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 228
FaiI YATR 2 cut(s) 20, 226
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
GlaI GCGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 16
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 156
KpnI GGTACC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 87, 91, 125, 144, 152
LweI GCATC 2 cut(s) 103, 143
MaeII ACGT 1 cut(s) 169
MboII GAAGA 1 cut(s) 77
MluCI AATT 2 cut(s) 60, 129
MnlI CCTC 2 cut(s) 48, 92
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 59
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 2 cut(s) 76, 172
RsaNI GTAC 2 cut(s) 75, 171
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 140
SetI ASST 2 cut(s) 59, 172
SfaNI GCATC 2 cut(s) 103, 143
SgeI CNNG 8 cut(s) 90, 114, 130, 151, 152, 171, 214, 237
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 2 cut(s) 60, 129
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 60, 129
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 122
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.