MD06G1134700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000526
Physical Location & Seq
Forward (+)
27928430 .. 27931348
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1134700.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGCGACGCCGAGAGAGCACATTGAAGAAATACGCAAGGAAAAGTTCTCCATCGGAGAAGAAAAACTCAACCCTTTAACTGAAGATCTTCATCAGGCGGTCAAAAATCTTTCTCTTGAACTCTATACTAAATCTGTCCACTTCGTCATGGAACTCATTCAGAATGCAGAAGACAATGAGTACGCAGACGGCGTTGATCCATCACTTGAATTTGTCATAACGTCCAGGGATATAACCGGCACAGGGGCTCCTGCCACATTGCTGGTTTTCAACAACGAGAAGGGATTTCACGTAAGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.33

Weight (kDa)

4.87

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 4 cut(s) 26, 119, 209, 271
AjnI CCWGG 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 21
AlwI GGATC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 2 cut(s) 87, 156
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 21
BccI CCATC 2 cut(s) 59, 208
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 226
BglII AGATCT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 243
BsmI GAATGC 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 21, 250
Bsp143I GATC 2 cut(s) 85, 196
BspACI CCGC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 85, 196
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 292
BstKTI GATC 2 cut(s) 88, 199
BstMBI GATC 2 cut(s) 85, 196
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 236
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 148
CviJI RGCY 1 cut(s) 248
CviKI_1 RGCY 1 cut(s) 248
CviQI GTAC 1 cut(s) 181
DpnI GATC 2 cut(s) 87, 198
DpnII GATC 2 cut(s) 85, 196
Eco24I GRGCYC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 126, 149, 218, 233, 301
FatI CATG 1 cut(s) 147
FriOI GRGCYC 1 cut(s) 250
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 1 cut(s) 151
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 56, 162
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 221, 291
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpySE526I ACGT 2 cut(s) 221, 291
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 2 cut(s) 85, 196
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 7 cut(s) 80, 211, 228, 238, 248, 250, 264
MaeII ACGT 2 cut(s) 221, 291
MalI GATC 2 cut(s) 87, 198
MboI GATC 2 cut(s) 85, 196
MboII GAAGA 5 cut(s) 38, 71, 80, 95, 182
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 21, 250
MluCI AATT 1 cut(s) 209
MroXI GAANNNNTTC 2 cut(s) 87, 156
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 85, 196
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 87, 156
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 77
Sau3AI GATC 2 cut(s) 85, 196
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 2 cut(s) 21, 250
SetI ASST 2 cut(s) 224, 294
Sse9I AATT 1 cut(s) 209
SsiI CCGC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 2 cut(s) 224, 294
TasI AATT 1 cut(s) 209
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 80
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 87, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.