Rh2DG017300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000526
Physical Location & Seq
Reverse (-)
981908 .. 987524
5617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG017300.1

Sequence Viewer

Length: 636 bp
ATGTCGGCACGACGGCACCTCTTAAAAATTTCTTGCAACATAATTGGTTCAGAACTTGTTGCATCCTCTTGGAATATTTTTAAATTGGCTTCAATTTATGCCTTGGATGATGCTGCACTTCAACACACCTTTGACAGATGTGAGAAAGAAGCCATTGAAGGTGAGTCAAGTTCTGATTGGACCCAGAAGGAGGAAGCTGCTAAGCTTCACATAGAAGAAATTCGGACCCAGAAATATTCAATTGGTAAAGACGAAGCTAACCCCTTAGGCAAAGATCTTCATCGAGCCCTGATGACCAACATCTCAAAAGATGCCAACTTTTTGAGGGAACTCATCCTGAACGCTGAAGAGAATGAATACGAAGAAGGTGTAGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACATAACAGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGCATTCTGCATAGGACTTCAAAGAAAAACTCGGATGATACTGAGGAATTATGCGATTATTACTTGTGGGAAAAGGAATTTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.12

Weight (kDa)

5.65

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AciI CCGC 1 cut(s) 492
AcsI RAATTY 4 cut(s) 27, 219, 386, 625
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 7 cut(s) 93, 122, 158, 240, 448, 542, 569
AjnI CCWGG 1 cut(s) 467
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 4 cut(s) 197, 205, 257, 431
AluI AGCT 4 cut(s) 197, 205, 257, 431
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 2 cut(s) 410, 517
AlwNI CAGNNNCTG 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 113, 197
ApoI RAATTY 4 cut(s) 27, 219, 386, 625
Asp700I GAANNNNTTC 2 cut(s) 219, 551
AspS9I GGNCC 2 cut(s) 180, 225
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 2 cut(s) 180, 225
AxyI CCTNAGG 1 cut(s) 265
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 100, 184
BccI CCATC 1 cut(s) 508
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 410, 517
BglII AGATCT 1 cut(s) 274
BisI GCNGC 3 cut(s) 114, 198, 493
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 3 cut(s) 115, 199, 494
Bme1390I CCNGG 1 cut(s) 469
Bme18I GGWCC 2 cut(s) 180, 225
BmgT120I GGNCC 2 cut(s) 180, 225
BmiI GGNNCC 3 cut(s) 17, 182, 227
BmrFI CCNGG 1 cut(s) 469
BmsI GCATC 3 cut(s) 71, 100, 301
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 102, 399, 468
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 424, 631
Bse21I CCTNAGG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 469
BseDI CCNNGG 3 cut(s) 102, 399, 468
BseGI GGATG 4 cut(s) 62, 112, 333, 588
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 424, 631
BseXI GCAGC 2 cut(s) 100, 184
BsgI GTGCAG 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 410, 517
BsmI GAATGC 2 cut(s) 551, 553
Bsp1286I GDGCHC 2 cut(s) 289, 427
Bsp143I GATC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 582
BspLI GGNNCC 3 cut(s) 17, 182, 227
BspT107I GGYRCC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 424, 631
BssECI CCNNGG 3 cut(s) 102, 399, 468
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 102, 399
Bst2UI CCWGG 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 342, 537
BstDEI CTNAG 3 cut(s) 201, 265, 590
BstF5I GGATG 4 cut(s) 62, 112, 333, 588
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 2 cut(s) 410, 517
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 100, 184
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 62, 112, 333, 588
CaiI CAGNNNCTG 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 180, 225
CviAII CATG 1 cut(s) 478
CviJI RGCY 8 cut(s) 89, 152, 197, 205, 257, 287, 431, 462
CviKI_1 RGCY 8 cut(s) 89, 152, 197, 205, 257, 287, 431, 462
DdeI CTNAG 3 cut(s) 201, 265, 590
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 342, 537
EarI CTCTTC 2 cut(s) 342, 537
Eco130I CCWWGG 2 cut(s) 102, 399
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 180, 225
Eco57I CTGAAG 1 cut(s) 366
Eco81I CCTNAGG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 467
EcoT14I CCWWGG 2 cut(s) 102, 399
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 102, 399
FaeI CATG 1 cut(s) 481
FaiI YATR 8 cut(s) 41, 99, 212, 410, 479, 497, 560, 600
FatI CATG 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 114, 198, 493
FokI GGATG 4 cut(s) 49, 119, 320, 595
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 114, 198, 493
GluI GCNGC 3 cut(s) 114, 198, 493
GsuI CTGGAG 1 cut(s) 441
Hin1II CATG 1 cut(s) 481
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 164, 482
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 4 cut(s) 52, 175, 225, 582
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 152, 181, 359
HpyCH4V TGCA 5 cut(s) 36, 62, 116, 551, 558
HpyF3I CTNAG 3 cut(s) 201, 265, 590
Hsp92II CATG 1 cut(s) 481
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 422
LpnPI CCDG 9 cut(s) 197, 242, 302, 350, 390, 405, 441, 454, 481
Lsp1109I GCAGC 2 cut(s) 100, 184
LweI GCATC 3 cut(s) 71, 100, 301
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 6 cut(s) 227, 269, 359, 374, 416, 554
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 289, 427
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 6 cut(s) 29, 76, 184, 318, 525, 585
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 2 cut(s) 219, 551
MseI TTAA 3 cut(s) 23, 81, 536
MspR9I CCNGG 1 cut(s) 469
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 2 cut(s) 551, 553
MvaI CCWGG 1 cut(s) 469
NdeII GATC 1 cut(s) 274
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 3 cut(s) 17, 182, 227
NsiI ATGCAT 1 cut(s) 553
PctI GAATGC 2 cut(s) 551, 553
PdmI GAANNNNTTC 2 cut(s) 219, 551
PfeI GAWTC 1 cut(s) 482
PkrI GCNGC 3 cut(s) 115, 199, 494
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 467
PspGI CCWGG 1 cut(s) 467
PspN4I GGNNCC 3 cut(s) 17, 182, 227
PspPI GGNCC 2 cut(s) 180, 225
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 274
SaqAI TTAA 3 cut(s) 23, 81, 536
SatI GCNGC 3 cut(s) 114, 198, 493
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 2 cut(s) 180, 225
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 469
SduI GDGCHC 2 cut(s) 289, 427
SetI ASST 9 cut(s) 21, 131, 163, 199, 207, 259, 370, 433, 536
SfaNI GCATC 3 cut(s) 71, 100, 301
SinI GGWCC 2 cut(s) 180, 225
SsiI CCGC 1 cut(s) 492
SspI AATATT 2 cut(s) 76, 236
StyD4I CCNGG 1 cut(s) 467
StyI CCWWGG 2 cut(s) 102, 399
TaqI TCGA 1 cut(s) 283
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 3 cut(s) 23, 81, 536
Tru9I TTAA 3 cut(s) 23, 81, 536
TseI GCWGC 2 cut(s) 113, 197
TspDTI ATGAA 4 cut(s) 269, 369, 398, 468
VpaK11BI GGWCC 2 cut(s) 180, 225
XapI RAATTY 4 cut(s) 27, 219, 386, 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmnI GAANNNNTTC 2 cut(s) 219, 551
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.