Rh2BG015100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000526
Physical Location & Seq
Reverse (-)
1122282 .. 1131902
9621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG015100.1

Sequence Viewer

Length: 342 bp
ATGAAATTTGTGTTGACCAAGGAAGATATAACTGAGACTGGAGCACTTGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGAAGCGGATTCAAAAGTGTATTTTTTGTGAGTTCACAGCCTTACATTTTCAGCAATGGATATCGTGTTAGATTCCAGGAAGAACCAGATCAAGATTGTGTTTCTCTATTATTGATTGTCCTTTACATCGATATCCTTGCATTGAAAGCTACCTACACTGAGTATTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.01

Weight (kDa)

4.84

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 174
AcsI RAATTY 1 cut(s) 5
AgsI TTSAA 4 cut(s) 67, 161, 181, 313
AjnI CCWGG 2 cut(s) 86, 243
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 29, 136
ApoI RAATTY 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 88, 245
BcoDI GTCTC 2 cut(s) 29, 136
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 88, 245
BmrFI CCNGG 2 cut(s) 88, 245
BpmI CTGGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 18, 87
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 88, 245
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 18, 87
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 24, 318
BseNI ACTGG 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 29, 136
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 111, 174
BspCNI CTCAG 2 cut(s) 25, 319
BspDI ATCGAT 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 18, 87
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 88, 245
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 33, 327
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 29, 136
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 2 cut(s) 88, 245
BstSCI CCNGG 2 cut(s) 86, 243
Bsu15I ATCGAT 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 324
ClaI ATCGAT 1 cut(s) 297
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 81, 208, 317
CviKI_1 RGCY 3 cut(s) 81, 208, 317
DdeI CTNAG 2 cut(s) 33, 327
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 18
Eco32I GATATC 2 cut(s) 230, 301
EcoRII CCWGG 2 cut(s) 86, 243
EcoRV GATATC 2 cut(s) 230, 301
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 29, 98, 116
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 60
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 3 cut(s) 101, 177, 240
Hpy166II GTNNAC 2 cut(s) 15, 203
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 15, 203
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 33, 327
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 24, 73, 100, 230, 257, 267
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 35, 173, 260
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 2 cut(s) 5, 156
MnlI CCTC 1 cut(s) 144
MseI TTAA 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 88, 245
MvaI CCWGG 2 cut(s) 88, 245
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 100
PfeI GAWTC 3 cut(s) 101, 177, 240
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 86, 243
PspGI CCWGG 2 cut(s) 86, 243
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 88, 245
SduI GDGCHC 1 cut(s) 46
SetI ASST 3 cut(s) 155, 319, 323
Sse9I AATT 2 cut(s) 5, 156
SsiI CCGC 2 cut(s) 111, 174
StyD4I CCNGG 2 cut(s) 86, 243
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 5, 156
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 3 cut(s) 101, 177, 240
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 17, 87
TspRI CASTG 1 cut(s) 331
XapI RAATTY 1 cut(s) 5
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.