Rmu_sc0015050.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015050.1
OG0000526
Physical Location & Seq
Reverse (-)
2 .. 2190
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015050.1_g000001.1.cds

Sequence Viewer

Length: 1034 bp
atgaatgcagaagacaatgagtacttggagggggtcgatccatcccttgagtttgtgattacatacctcgatataacggctacaggggctccagccacattgctggttttcaataatgagaaggggttttctcccaaaaacatagactccatttgcagtgttggacggtccaccaagaaaggcaacaggaagcgtggttatattggggagaaaggaattggcttcaagagtgtgtttctgatcactgctcagccttacatatttagtaatggttatcagataaggttcagcgaagagccttgttcacattgcaatgttggctacatagtacctgaatgggttgagcagaatcccacactatctgatataaaaaagatatatggttctgctactgcccttcctaccacaacactgatcttacctctgaagcccaataaggttgaacctgtgaagaaacaactctcaatcattcatccagaagttctcttgttcctatcaaagattaagcggctctctgttagggaagacaaagaggatccaaggcagaacactgtgagtgcaattgagatagcaagccagactgagtttgtgtcaaggaagaacatcgatgctcaatcctacactctgcatctttcagctgaagaaaatgatggaaatggagaatgcagttactacatgtggaaacaaaagtttcctgtcagacaggaattcagagttgagaggagaatggaggtggatgagtgggtgatcactcttgcatttccaaatggagaacgtcttcgaagagcaaggaactcatcgcctggtgtttatgcatttcttcccacagagatggtcaccaactttcccttcataatacaggctgattttcttttagcatcttcaagagagacaatcctacttgacaacaagtggaatcaagggattcttgagtgtgtgcccaccgcattttcacatgcttttaactctcttgtgaaaactgtggaaggtgcgccaacatcaagtttgcctcctatgttcagattcttgcctgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.96

Weight (kDa)

6.48

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 508, 945
AclWI GGATC 3 cut(s) 32, 530, 543
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 2 cut(s) 446, 660
AfaI GTAC 2 cut(s) 23, 330
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 112, 226, 443, 885
AjnI CCWGG 1 cut(s) 802
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 1 cut(s) 638
AluI AGCT 1 cut(s) 638
Alw26I GTCTC 1 cut(s) 884
AlwI GGATC 3 cut(s) 32, 530, 543
ApoI RAATTY 1 cut(s) 707
Asp700I GAANNNNTTC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 994
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 757, 829
AsuII TTCGAA 1 cut(s) 781
AvaII GGWCC 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 942
BamHI GGATCC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 3 cut(s) 18, 531, 770
BccI CCATC 3 cut(s) 49, 644, 826
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 2 cut(s) 240, 747
BcoDI GTCTC 1 cut(s) 884
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 510
BmcAI AGTACT 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 90, 537
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 3 cut(s) 598, 637, 887
BpiI GAAGAC 3 cut(s) 18, 531, 770
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 781
BpuEI CTTGAG 2 cut(s) 68, 950
Bsa29I ATCGAT 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 539
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 131, 161
Bse3DI GCAATG 3 cut(s) 98, 307, 319
BseBI CCWGG 1 cut(s) 804
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 539
BseGI GGATG 3 cut(s) 41, 472, 742
BseMI GCAATG 3 cut(s) 98, 307, 319
BseMII CTCAG 2 cut(s) 263, 573
BseRI GAGGAG 1 cut(s) 736
BseSI GKGCMC 1 cut(s) 942
BshVI ATCGAT 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 884
BsmI GAATGC 2 cut(s) 10, 668
Bsp119I TTCGAA 1 cut(s) 781
Bsp1286I GDGCHC 2 cut(s) 91, 942
Bsp143I GATC 5 cut(s) 37, 240, 414, 535, 747
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 2 cut(s) 508, 945
BspCNI CTCAG 2 cut(s) 262, 574
BspDI ATCGAT 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 90, 537
BspPI GGATC 3 cut(s) 32, 530, 543
BspQI GCTCTTC 2 cut(s) 288, 778
BspT104I TTCGAA 1 cut(s) 781
BsrDI GCAATG 3 cut(s) 98, 307, 319
BssECI CCNNGG 1 cut(s) 539
BssMI GATC 5 cut(s) 37, 240, 414, 535, 747
BssT1I CCWWGG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 3 cut(s) 168, 553, 982
Bst6I CTCTTC 2 cut(s) 288, 778
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 2 cut(s) 249, 582
BstEII GGTNACC 1 cut(s) 835
BstF5I GGATG 3 cut(s) 41, 472, 742
BstHHI GCGC 1 cut(s) 994
BstKTI GATC 5 cut(s) 40, 243, 417, 538, 750
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 5 cut(s) 37, 240, 414, 535, 747
BstMWI GCNNNNNNNGC 2 cut(s) 86, 318
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 2 cut(s) 679, 959
BstPI GGTNACC 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 942
BstV2I GAAGAC 3 cut(s) 18, 531, 770
BstX2I RGATCY 1 cut(s) 535
BstXI CCANNNNNNTGG 2 cut(s) 103, 832
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 606
BsuTUI ATCGAT 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 3 cut(s) 41, 472, 742
BtsI GCAGTG 2 cut(s) 163, 243
BtsIMutI CAGTG 4 cut(s) 163, 243, 410, 549
Cac8I GCNNGC 1 cut(s) 574
CfoI GCGC 1 cut(s) 994
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 2 cut(s) 22, 329
CviAII CATG 2 cut(s) 676, 956
CviQI GTAC 2 cut(s) 22, 329
DdeI CTNAG 2 cut(s) 249, 582
DpnI GATC 5 cut(s) 39, 242, 416, 537, 749
DpnII GATC 5 cut(s) 37, 240, 414, 535, 747
Eam1104I CTCTTC 2 cut(s) 288, 778
EarI CTCTTC 2 cut(s) 288, 778
Eco130I CCWWGG 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 168
Eco57I CTGAAG 2 cut(s) 446, 660
Eco91I GGTNACC 1 cut(s) 835
EcoO65I GGTNACC 1 cut(s) 835
EcoRI GAATTC 1 cut(s) 707
EcoRII CCWGG 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 539
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 539
FaeI CATG 2 cut(s) 679, 959
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 2 cut(s) 675, 955
FbaI TGATCA 2 cut(s) 240, 747
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 3 cut(s) 28, 459, 749
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 509
GlaI GCGC 1 cut(s) 993
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 75
HhaI GCGC 1 cut(s) 994
Hin1II CATG 2 cut(s) 679, 959
Hin6I GCGC 1 cut(s) 992
HinP1I GCGC 1 cut(s) 992
HinfI GANTC 5 cut(s) 146, 349, 916, 925, 1023
HphI GGTGA 2 cut(s) 757, 829
Hpy166II GTNNAC 2 cut(s) 171, 305
Hpy188I TCNGA 7 cut(s) 240, 279, 364, 426, 701, 713, 1022
Hpy188III TCNNGA 4 cut(s) 226, 476, 885, 929
Hpy8I GTNNAC 2 cut(s) 171, 305
HpyAV CCTTC 4 cut(s) 115, 407, 859, 980
HpyCH4III ACNGT 3 cut(s) 168, 553, 982
HpyCH4IV ACGT 1 cut(s) 775
HpyCH4V TGCA 8 cut(s) 8, 156, 312, 560, 628, 666, 758, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 318
HpyF3I CTNAG 2 cut(s) 249, 582
HpySE526I ACGT 1 cut(s) 775
Hsp92II CATG 2 cut(s) 679, 959
HspAI GCGC 1 cut(s) 992
Ksp22I TGATCA 2 cut(s) 240, 747
Kzo9I GATC 5 cut(s) 37, 240, 414, 535, 747
LguI GCTCTTC 2 cut(s) 288, 778
LmnI GCTCC 1 cut(s) 94
LweI GCATC 3 cut(s) 598, 637, 887
MaeII ACGT 1 cut(s) 775
MaeIII GTNAC 2 cut(s) 668, 835
MalI GATC 5 cut(s) 39, 242, 416, 537, 749
MboI GATC 5 cut(s) 37, 240, 414, 535, 747
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 91, 942
MluCI AATT 3 cut(s) 216, 561, 707
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 22, 77, 432, 526, 714, 724, 1020
Mph1103I ATGCAT 1 cut(s) 817
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 2 cut(s) 504, 963
MslI CAYNNNNRTG 2 cut(s) 312, 830
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 10, 668
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 2 cut(s) 86, 318
NdeII GATC 5 cut(s) 37, 240, 414, 535, 747
NlaIII CATG 2 cut(s) 679, 959
NlaIV GGNNCC 2 cut(s) 90, 537
NmuCI GTSAC 1 cut(s) 835
NsiI ATGCAT 1 cut(s) 817
NspI RCATGY 2 cut(s) 679, 959
NspV TTCGAA 1 cut(s) 781
PciI ACATGT 1 cut(s) 675
PciSI GCTCTTC 2 cut(s) 288, 778
PctI GAATGC 2 cut(s) 10, 668
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 349, 916, 925, 1023
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 802
PspEI GGTNACC 1 cut(s) 835
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 2 cut(s) 90, 537
PspPI GGNCC 1 cut(s) 168
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 2 cut(s) 23, 330
RsaNI GTAC 2 cut(s) 22, 329
RseI CAYNNNNRTG 2 cut(s) 312, 830
SapI GCTCTTC 2 cut(s) 288, 778
SaqAI TTAA 2 cut(s) 504, 963
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 5 cut(s) 37, 240, 414, 535, 747
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 23
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 91, 942
SfaNI GCATC 3 cut(s) 598, 637, 887
SfcI CTRYAG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 312, 830
SmlI CTYRAG 2 cut(s) 47, 929
SmoI CTYRAG 2 cut(s) 47, 929
Sse9I AATT 3 cut(s) 216, 561, 707
SsiI CCGC 2 cut(s) 508, 945
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 168, 553, 982
TaiI ACGT 1 cut(s) 778
TaqI TCGA 4 cut(s) 36, 69, 606, 781
TasI AATT 3 cut(s) 216, 561, 707
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 511
TfiI GAWTC 4 cut(s) 349, 916, 925, 1023
Tru1I TTAA 2 cut(s) 504, 963
Tru9I TTAA 2 cut(s) 504, 963
TscAI CASTG 4 cut(s) 163, 250, 417, 556
TseFI GTSAC 1 cut(s) 835
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 3 cut(s) 17, 461, 841
TspRI CASTG 4 cut(s) 163, 250, 417, 556
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 1 cut(s) 707
XceI RCATGY 2 cut(s) 679, 959
XmnI GAANNNNTTC 1 cut(s) 777
ZrmI AGTACT 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.