MD08G1137600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000526
Physical Location & Seq
Forward (+)
13185746 .. 13188369
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1137600.v1.1.491

Sequence Viewer

Length: 294 bp
ATGACAAAGAAGGACATAACTGGGAGTGTAGCTCCGGCTACTTTGCTGGTTTTTAATAATAAGGTTGGATTTTCCAGGAAGAATATGGACTCGATCTGCAGTGTAGGACGTTCTACAAAGAAGGGGAAGAGACAACAGGTTTATTGGAGAAAAAGTGTTTCCATTTTTTGGTGCAAAGCTCCACGATTGGCTAGCGTGAATCTTGGTATCTTCATATGCATGCAATGTTCAGGGATCCATAAGAGTCTTGGGGTACATATATCAAATGTGAGATCTGCCACTTTGGATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.71

Weight (kDa)

10.42

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 59 - 97 8.5e-15 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AclWI GGATC 2 cut(s) 229, 242
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 168
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 32, 179
AluI AGCT 2 cut(s) 32, 179
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 229, 242
AsuNHI GCTAGC 1 cut(s) 191
BamHI GGATCC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 97
BfuI GTATCC 1 cut(s) 280
BglII AGATCT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 93, 234, 272
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 101
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 2 cut(s) 229, 242
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 25
BssMI GATC 3 cut(s) 93, 234, 272
Bst2UI CCWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 193, 221
BstKTI GATC 3 cut(s) 96, 237, 275
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 93, 234, 272
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 97
BstX2I RGATCY 2 cut(s) 234, 272
BstYI RGATCY 2 cut(s) 234, 272
BsuI GTATCC 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 193, 221
Csp6I GTAC 1 cut(s) 254
CviAII CATG 2 cut(s) 220, 291
CviJI RGCY 4 cut(s) 32, 38, 179, 191
CviKI_1 RGCY 4 cut(s) 32, 38, 179, 191
CviQI GTAC 1 cut(s) 254
DpnI GATC 3 cut(s) 95, 236, 274
DpnII GATC 3 cut(s) 93, 234, 272
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 2 cut(s) 223, 294
FaiI YATR 9 cut(s) 17, 86, 215, 217, 221, 240, 258, 260, 292
FatI CATG 2 cut(s) 219, 290
FauNDI CATATG 1 cut(s) 215
FspBI CTAG 1 cut(s) 192
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 223, 294
HinfI GANTC 3 cut(s) 89, 199, 244
HpaII CCGG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 4, 115
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 99, 174, 219, 223
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 223, 294
Kzo9I GATC 3 cut(s) 93, 234, 272
LmnI GCTCC 2 cut(s) 37, 184
LpnPI CCDG 7 cut(s) 6, 32, 48, 61, 88, 122, 216
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 109
MalI GATC 3 cut(s) 95, 236, 274
MboI GATC 3 cut(s) 93, 234, 272
MboII GAAGA 3 cut(s) 91, 139, 202
MflI RGATCY 2 cut(s) 234, 272
MlyI GAGTC 2 cut(s) 83, 253
MmeI TCCRAC 1 cut(s) 46
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
NdeI CATATG 1 cut(s) 215
NdeII GATC 3 cut(s) 93, 234, 272
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 223, 294
NlaIV GGNNCC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 1 cut(s) 223
PaeI GCATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 74
PleI GAGTC 2 cut(s) 83, 252
PpsI GAGTC 2 cut(s) 83, 252
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 101
PsuI RGATCY 2 cut(s) 234, 272
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 3 cut(s) 93, 234, 272
SchI GAGTC 2 cut(s) 83, 253
ScrFI CCNGG 1 cut(s) 76
SetI ASST 5 cut(s) 34, 66, 112, 141, 181
SfcI CTRYAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 218
SphI GCATGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 92
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 168
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 245
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.