pycom06g12640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000526
Physical Location & Seq
Forward (+)
17763558 .. 17766896
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12640.2

Sequence Viewer

Length: 807 bp
ATGGAACTGATTCAGAATGCAGAAGACAATGAGTACGCAGACGGCGTTGATCCATCACTTGAATTTGTCATAACGTCCAGGGATATAACCGGCACAGGGGCTCCTGCCACATTGCTGGTTTTCAACAACGAGAAGGGATTTTCAACTAAGAACATAGAATCCATTTGCAGCATTGGACGGTCCACCAAGAAAGGCAACCGGAAGCGCGGCTACATTGGAGAGAAAGGAATTGGCTTCAAGAGTGTGTTTCTGATCACAGATCGGCCTTACATCTTTAGTAATGGCTATCAGATAAGGTTCAGTAAAGAGCCTTGTCTGCATTGCAATCTTGGGTACATTGTTCCTGAATGGGTTGAGGAAAACCCTACTCTATGTGACATACAACAGATATATGGTTATGGTTCTGCCCTTCCAACCACAACGCTGATCTTACCTCTAAAGCCCGACGAGGTCCATCCTGTGAAGCAGCAGCTCTCAAGAATGCATCCGGAAGTTCTCTTGTTTCTTTCAAAGATTAAGCGGCTCTCGGTTAGGGAAGATAATGAGGATCCAAGGCTCGACACTGTGAGCGCGATATCAATATCAAGTGAGATTGATCTTGTGGCGCAGAAGAATATTGATGCTCAGTCCTACACACTCCACCTTTCTGCAGAAGAAAATGGTGACGATGACAAAAACTGTACCTATTATATGTGGAAGCAGAAGTTTCCTGTCAGGCAAGAATTCAGAGAGGAGAGGAGAATGGAGGTCGATGAGTGGGTGATCACGCTGTGGAGGAGCATTTCCATTTGGGGAGCGCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.61

Weight (kDa)

5.2

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 207, 572
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 2 cut(s) 207, 520
AclWI GGATC 3 cut(s) 44, 542, 555
AcsI RAATTY 2 cut(s) 62, 722
AdeI CACNNNGTG 1 cut(s) 771
AfaI GTAC 3 cut(s) 35, 335, 682
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 5 cut(s) 62, 124, 144, 238, 510
AjnI CCWGG 1 cut(s) 77
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 472
AluI AGCT 1 cut(s) 472
AlwI GGATC 3 cut(s) 44, 542, 555
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 3 cut(s) 168, 466, 469
ApoI RAATTY 2 cut(s) 62, 722
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 4 cut(s) 207, 572, 607, 799
AspS9I GGNCC 2 cut(s) 180, 451
AsuHPI GGTGA 2 cut(s) 674, 772
AvaII GGWCC 2 cut(s) 180, 451
BamHI GGATCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 103
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 180, 478, 481
BccI CCATC 2 cut(s) 61, 462
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 2 cut(s) 252, 762
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 800
BisI GCNGC 5 cut(s) 169, 208, 467, 470, 521
BlsI GCNGC 5 cut(s) 170, 209, 468, 471, 522
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 2 cut(s) 180, 451
BmgT120I GGNCC 2 cut(s) 180, 451
BmiI GGNNCC 2 cut(s) 102, 549
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 2 cut(s) 493, 610
BpiI GAAGAC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 78, 551
BsaWI WCCGGW 2 cut(s) 198, 487
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 89
Bse3DI GCAATG 2 cut(s) 110, 319
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 78, 551
BseGI GGATG 2 cut(s) 454, 484
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 2 cut(s) 110, 319
BseMII CTCAG 1 cut(s) 638
BseRI GAGGAG 3 cut(s) 746, 751, 790
BseXI GCAGC 3 cut(s) 180, 478, 481
Bsh1236I CGCG 2 cut(s) 207, 572
BshFI GGCC 1 cut(s) 265
BsiSI CCGG 3 cut(s) 90, 199, 488
BslI CCNNNNNNNGG 1 cut(s) 96
BsmI GAATGC 2 cut(s) 22, 486
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
BspACI CCGC 2 cut(s) 207, 520
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 2 cut(s) 207, 572
BspLI GGNNCC 2 cut(s) 102, 549
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 3 cut(s) 44, 542, 555
BsrDI GCAATG 2 cut(s) 110, 319
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 78, 551
BssMI GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
BssT1I CCWWGG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 180, 565, 680
BstDEI CTNAG 2 cut(s) 147, 624
BstF5I GGATG 2 cut(s) 454, 484
BstFNI CGCG 2 cut(s) 207, 572
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 4 cut(s) 207, 572, 607, 799
BstKTI GATC 7 cut(s) 52, 255, 262, 429, 550, 598, 765
BstMBI GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 207, 572
BstV1I GCAGC 3 cut(s) 180, 478, 481
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 547
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 454, 484
BtsIMutI CAGTG 1 cut(s) 561
CfoI GCGC 4 cut(s) 207, 572, 607, 799
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 180, 451
Csp6I GTAC 3 cut(s) 34, 334, 681
CviQI GTAC 3 cut(s) 34, 334, 681
DdeI CTNAG 2 cut(s) 147, 624
DpnI GATC 7 cut(s) 51, 254, 261, 428, 549, 597, 764
DpnII GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
DraIII CACNNNGTG 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 180, 451
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 551
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 551
FbaI TGATCA 2 cut(s) 252, 762
Fnu4HI GCNGC 5 cut(s) 169, 208, 467, 470, 521
FokI GGATG 2 cut(s) 441, 471
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 5 cut(s) 169, 208, 467, 470, 521
GlaI GCGC 4 cut(s) 206, 571, 606, 798
GluI GCNGC 5 cut(s) 169, 208, 467, 470, 521
HaeII RGCGCY 1 cut(s) 800
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 90, 199, 488
HhaI GCGC 4 cut(s) 207, 572, 607, 799
Hin6I GCGC 4 cut(s) 205, 570, 605, 797
HinP1I GCGC 4 cut(s) 205, 570, 605, 797
HinfI GANTC 2 cut(s) 10, 158
HpaII CCGG 3 cut(s) 90, 199, 488
HphI GGTGA 2 cut(s) 674, 772
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 4 cut(s) 15, 252, 291, 728
Hpy188III TCNNGA 4 cut(s) 238, 344, 477, 488
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 2 cut(s) 127, 419
HpyCH4III ACNGT 3 cut(s) 180, 565, 680
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 6 cut(s) 20, 168, 319, 324, 484, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 147, 624
HpySE526I ACGT 1 cut(s) 74
HspAI GCGC 4 cut(s) 205, 570, 605, 797
Kpn2I TCCGGA 1 cut(s) 487
Ksp22I TGATCA 2 cut(s) 252, 762
Kzo9I GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
LmnI GCTCC 3 cut(s) 106, 777, 794
Lsp1109I GCAGC 3 cut(s) 180, 478, 481
LweI GCATC 2 cut(s) 493, 610
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 374, 662
MalI GATC 7 cut(s) 51, 254, 261, 428, 549, 597, 764
MboI GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
MboII GAAGA 4 cut(s) 35, 548, 622, 665
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 3 cut(s) 62, 228, 722
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 8 cut(s) 349, 442, 444, 538, 724, 729, 739, 768
Mph1103I ATGCAT 1 cut(s) 486
MroI TCCGGA 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 516
MspI CCGG 3 cut(s) 90, 199, 488
MspR9I CCNGG 1 cut(s) 79
Mva1269I GAATGC 2 cut(s) 22, 486
MvaI CCWGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 207, 572
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
NlaIV GGNNCC 2 cut(s) 102, 549
NmuCI GTSAC 2 cut(s) 374, 662
NsiI ATGCAT 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 2 cut(s) 22, 486
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 10, 158
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 5 cut(s) 170, 209, 468, 471, 522
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 102, 549
PspPI GGNCC 2 cut(s) 180, 451
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 3 cut(s) 35, 335, 682
RsaNI GTAC 3 cut(s) 34, 334, 681
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 5 cut(s) 169, 208, 467, 470, 521
Sau3AI GATC 7 cut(s) 49, 252, 259, 426, 547, 595, 762
Sau96I GGNCC 2 cut(s) 180, 451
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 103
SetI ASST 8 cut(s) 77, 299, 436, 453, 474, 645, 686, 750
SfaNI GCATC 2 cut(s) 493, 610
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 2 cut(s) 180, 451
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 3 cut(s) 62, 228, 722
SsiI CCGC 2 cut(s) 207, 520
SspI AATATT 1 cut(s) 616
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 180, 565, 680
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 558, 750
TasI AATT 3 cut(s) 62, 228, 722
TauI GCSGC 2 cut(s) 210, 523
TfiI GAWTC 2 cut(s) 10, 158
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 374, 662
TseI GCWGC 3 cut(s) 168, 466, 469
Tsp45I GTSAC 2 cut(s) 374, 662
TspDTI ATGAA 1 cut(s) 792
TspRI CASTG 1 cut(s) 568
Tth111I GACNNNGTC 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 180, 451
XapI RAATTY 2 cut(s) 62, 722
XmnI GAANNNNTTC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.