Rroxscaffold_7G00193620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000526
Physical Location & Seq
Reverse (-)
35142755 .. 35144848
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193620.1

Sequence Viewer

Length: 561 bp
ATGGAGAACTCCTCGACAACTAAAGCTTTCTCTCACATACAAAAGATTAGAACCCAAAAGTTCTACATAGGTAAAAAAGAGGCTAACCGTTTAACTCAAGATCTTCACCACGCTGTGACCAGTCTCTGTGCTGAACTCTATGGCAAGGACGTCCATTTTATTATGGAACTCATACGGAATGCAGAAGACAATGAGTACAAACAAGGGGTAGAACCAACCCTGGAATTTGTGCTTACCAAGAAAGACATAACAGGGACTGGAGCACCAGCTACCCTGTTGATTCTATCTGCAGCGTGGGCCATTTGCTCCAAGATTGCTTGGCCTCCAAGTAGGCTTTATTTAGCCTCTAAACAATATATTCCGAGCTTATCGAAAATATATAGCTTGGGCCAGATATTGGCCCGATTCTCTTCGAGTTCCCTTCGTCGGGAAAAAATGTTATTTTGGGCTCAAACATTGCCCCCGGACCTCGAAGTCAAAGTTCCCCGTCTTGGTAGAAGAGGTCTTGAGTCGCATTCGTCTTGCGATAACGTCGCTTTAAAGCCACTTGCATTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.91

Weight (kDa)

9.46

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 473
AatII GACGTC 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 397
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 115
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 397, 426, 427, 491
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 26, 269, 366, 384
AluI AGCT 4 cut(s) 26, 269, 366, 384
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 128
AlwNI CAGNNNCTG 2 cut(s) 126, 257
AoxI GGCC 4 cut(s) 297, 320, 388, 399
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 224
AspS9I GGNCC 4 cut(s) 297, 388, 400, 466
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 100
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 221, 464
Bme18I GGWCC 1 cut(s) 466
BmgT120I GGNCC 4 cut(s) 297, 388, 400, 466
BmrFI CCNGG 2 cut(s) 221, 464
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 81, 527
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 219, 462
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 426, 427, 491
Bse1I ACTGG 2 cut(s) 120, 262
Bse3DI GCAATG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 219, 462
BseLI CCNNNNNNNGG 4 cut(s) 397, 426, 427, 491
BseMI GCAATG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 120, 262
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 4 cut(s) 299, 322, 390, 401
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 4 cut(s) 397, 426, 427, 491
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 184, 514
BsnI GGCC 4 cut(s) 299, 322, 390, 401
Bsp1286I GDGCHC 2 cut(s) 265, 451
Bsp143I GATC 1 cut(s) 100
BspANI GGCC 4 cut(s) 299, 322, 390, 401
BspMAI CTGCAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 2 cut(s) 120, 262
BssECI CCNNGG 2 cut(s) 219, 462
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 415, 493
BstACI GRCGYC 1 cut(s) 150
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 219, 462
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 4 cut(s) 299, 322, 390, 401
CaiI CAGNNNCTG 2 cut(s) 126, 257
Cfr13I GGNCC 4 cut(s) 297, 388, 400, 466
Csp6I GTAC 1 cut(s) 196
CspCI CAANNNNNGTGG 1 cut(s) 534
CviQI GTAC 1 cut(s) 196
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 540
DraIII CACNNNGTG 1 cut(s) 115
DrdI GACNNNNNNGTC 1 cut(s) 473
DseDI GACNNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 2 cut(s) 415, 493
EarI CTCTTC 2 cut(s) 415, 493
Eco24I GRGCYC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 451
FaiI YATR 9 cut(s) 38, 68, 141, 164, 173, 248, 357, 379, 381
FaqI GGGAC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 4 cut(s) 299, 322, 390, 401
HapII CCGG 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 280, 405, 509
HpaII CCGG 1 cut(s) 464
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 3 cut(s) 98, 428, 506
Hpy99I CGWCG 2 cut(s) 429, 536
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 150, 531
HpyCH4V TGCA 3 cut(s) 182, 290, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 150, 531
Hsp92I GRCGYC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 260, 311
LpnPI CCDG 9 cut(s) 133, 206, 233, 237, 243, 279, 287, 404, 477
Lsp1109I GCAGC 1 cut(s) 302
MaeII ACGT 2 cut(s) 150, 531
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 95, 197, 402, 510
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 265, 451
MluCI AATT 1 cut(s) 224
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 6 cut(s) 22, 73, 333, 355, 479, 494
MseI TTAA 3 cut(s) 92, 539, 559
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 221, 464
Mva1269I GAATGC 2 cut(s) 184, 514
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 464
NdeII GATC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 115
PctI GAATGC 2 cut(s) 184, 514
PfeI GAWTC 2 cut(s) 280, 405
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 4 cut(s) 297, 388, 400, 466
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 2 cut(s) 126, 257
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 92, 539, 559
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 4 cut(s) 297, 388, 400, 466
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 2 cut(s) 221, 464
SduI GDGCHC 2 cut(s) 265, 451
SetI ASST 9 cut(s) 28, 73, 153, 271, 368, 386, 471, 505, 534
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 96, 506
SmoI CTYRAG 2 cut(s) 96, 506
Sse9I AATT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 219, 462
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 153, 534
TaqI TCGA 4 cut(s) 14, 371, 413, 471
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 280, 405
Tru1I TTAA 3 cut(s) 92, 539, 559
Tru9I TTAA 3 cut(s) 92, 539, 559
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 466
XapI RAATTY 1 cut(s) 224
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.