pycom06g12610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000526
Physical Location & Seq
Forward (+)
17732636 .. 17733034
399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12610.1

Sequence Viewer

Length: 399 bp
ATGCAACAGCCGCAGGGGCACAACACTGTAAGTGCGATAGCAATATCAAGCGAGACTAATTCTGTCACCAGGAAGAACATGGATGCTGAATCCTACAGAGTCCACCTTTCTGCGAAAGAAAATGGCTACAAGTTTGATAAAGAATGCGGCTATTATATGTGGAAGCAGAAGTTTCCTGTCAAGCCGGAGTGCATAGTGGATGGGAGAAATGATGTAGATGAATGGGAGATCACGCTTGCATTTCCAATTGGAGAGCGCCTTTGCAGAGGAACAAACACATCTCCTAGAGTCTGCATTCCTTCCCACCGAGATGGTGACAAACGTTCCCTTTATAATTCAATCCGATTTTCTTCTTGCCTCATCAAGGGAAACAATTCTTCTGGACAGCAAATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

8.28

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AciI CCGC 2 cut(s) 11, 147
AclI AACGTT 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 373
AspLEI GCGC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 58, 326
BaeGI GKGCMC 1 cut(s) 21
BccI CCATC 2 cut(s) 194, 305
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 2 cut(s) 11, 148
BlsI GCNGC 2 cut(s) 12, 149
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 88, 205
BseLI CCNNNNNNNGG 1 cut(s) 364
BseSI GKGCMC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 2 cut(s) 149, 294
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 2 cut(s) 11, 147
BssMI GATC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 88, 205
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 10, 16
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 88, 205
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 1 cut(s) 258
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 10, 126, 150, 184
CviKI_1 RGCY 4 cut(s) 10, 126, 150, 184
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 68
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 80, 156, 158, 194, 333
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 11, 148
FokI GGATG 2 cut(s) 95, 212
Fsp4HI GCNGC 2 cut(s) 11, 148
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 11, 148
HaeII RGCGCY 1 cut(s) 259
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 3 cut(s) 89, 99, 288
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 58, 326
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 381
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 4, 192, 239, 264, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 16
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 55, 82, 189, 198, 366
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 64, 314
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 3 cut(s) 85, 342, 369
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 58, 246, 334, 373
MlyI GAGTC 2 cut(s) 108, 297
MnlI CCTC 2 cut(s) 260, 368
MroXI GAANNNNTTC 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 2 cut(s) 149, 294
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 10, 16
NdeII GATC 1 cut(s) 228
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 64, 314
PctI GAATGC 2 cut(s) 149, 294
PdmI GAANNNNTTC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 12, 149
PleI GAGTC 2 cut(s) 107, 296
PpsI GAGTC 2 cut(s) 107, 296
PsiI TTATAA 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 309
SatI GCNGC 2 cut(s) 11, 148
Sau3AI GATC 1 cut(s) 228
SchI GAGTC 2 cut(s) 108, 297
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 21
SetI ASST 2 cut(s) 108, 325
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 4 cut(s) 58, 246, 334, 373
SsiI CCGC 2 cut(s) 11, 147
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 325
TasI AATT 4 cut(s) 58, 246, 334, 373
TauI GCSGC 2 cut(s) 13, 150
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 64, 314
Tsp45I GTSAC 2 cut(s) 64, 314
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 31
XagI CCTNNNNNAGG 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 373
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.