Rh1AG064800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000526
Physical Location & Seq
Reverse (-)
10783799 .. 10804211
20413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG064800.1

Sequence Viewer

Length: 450 bp
ATGGAGCAAGGCTGCAACTCACGCCTAGTTGCTCAATATGAAGGAGATCTGAGGGAAAAGGGAACAAACTCTGCTGCATTTGGATTTAAAGTAGTTGCCTTGCTTGCGTCATTCAACGCTGAAGAGAATGAATACGAAAAAGGTGTTGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACGTAACAGAGACTGGAGCACCAGCTGCTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGAAGCGGATTCAAAAGTGTATTTGGAGAAATGTTTTATTCCTTTGTACATGTAATGGTAATCCCGAATTTTGGTCAGAGATCCATAACAACATACATGATGTTATCTCATCTCATTCATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.78

Weight (kDa)

5.38

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 330
AclWI GGATC 1 cut(s) 399
AcsI RAATTY 2 cut(s) 161, 391
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 4 cut(s) 115, 223, 317, 337
AjnI CCWGG 1 cut(s) 242
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 185, 292
AlwI GGATC 1 cut(s) 399
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 12, 74, 206
ApoI RAATTY 2 cut(s) 161, 391
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 61, 193
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 185, 292
BfaI CTAG 1 cut(s) 26
BglII AGATCT 1 cut(s) 46
BisI GCNGC 4 cut(s) 13, 75, 207, 268
BlsI GCNGC 4 cut(s) 14, 76, 208, 269
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 174, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 174, 243
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 61, 193
BsiHKAI GWGCWC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 185, 292
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 2 cut(s) 46, 404
BspACI CCGC 2 cut(s) 267, 330
BspCNI CTCAG 1 cut(s) 42
BspPI GGATC 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 174, 243
BssMI GATC 2 cut(s) 46, 404
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 117, 312
BstAPI GCANNNNNTGC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 50
BstKTI GATC 2 cut(s) 49, 407
BstMAI GTCTC 2 cut(s) 185, 292
BstMBI GATC 2 cut(s) 46, 404
BstMWI GCNNNNNNNGC 3 cut(s) 21, 104, 206
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 61, 193
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 2 cut(s) 46, 404
BstYI RGATCY 2 cut(s) 46, 404
Cac8I GCNNGC 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 194
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 371
CviAII CATG 3 cut(s) 253, 374, 421
CviJI RGCY 3 cut(s) 12, 206, 237
CviKI_1 RGCY 3 cut(s) 12, 206, 237
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 48, 406
DpnII GATC 2 cut(s) 46, 404
DraI TTTAAA 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 117, 312
EarI CTCTTC 2 cut(s) 117, 312
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 256, 377, 424
FaiI YATR 8 cut(s) 39, 254, 272, 375, 410, 418, 422, 444
FatI CATG 3 cut(s) 252, 373, 420
Fnu4HI GCNGC 4 cut(s) 13, 75, 207, 268
Fsp4HI GCNGC 4 cut(s) 13, 75, 207, 268
FspBI CTAG 1 cut(s) 26
GluI GCNGC 4 cut(s) 13, 75, 207, 268
GsuI CTGGAG 1 cut(s) 216
HgaI GACGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 256, 377, 424
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 2 cut(s) 257, 333
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 51, 402
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 15, 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 104, 206
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 3 cut(s) 256, 377, 424
Kzo9I GATC 2 cut(s) 46, 404
LmnI GCTCC 2 cut(s) 4, 197
LpnPI CCDG 5 cut(s) 165, 180, 216, 229, 256
Lsp1109I GCAGC 2 cut(s) 61, 193
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 48, 406
MboI GATC 2 cut(s) 46, 404
MboII GAAGA 3 cut(s) 134, 191, 329
MflI RGATCY 2 cut(s) 46, 404
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 161, 312, 391
MnlI CCTC 2 cut(s) 45, 300
MseI TTAA 2 cut(s) 87, 311
MspA1I CMGCKG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 21, 104, 206
NdeII GATC 2 cut(s) 46, 404
NlaIII CATG 3 cut(s) 256, 377, 424
NspI RCATGY 1 cut(s) 377
PciI ACATGT 1 cut(s) 373
PfeI GAWTC 2 cut(s) 257, 333
PkrI GCNGC 4 cut(s) 14, 76, 208, 269
PscI ACATGT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 46, 404
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 87, 311
SatI GCNGC 4 cut(s) 13, 75, 207, 268
Sau3AI GATC 2 cut(s) 46, 404
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 145, 186, 208, 311
Sse9I AATT 3 cut(s) 161, 312, 391
SsiI CCGC 2 cut(s) 267, 330
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 1 cut(s) 186
TasI AATT 3 cut(s) 161, 312, 391
TatI WGTACW 1 cut(s) 370
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 257, 333
Tru1I TTAA 2 cut(s) 87, 311
Tru9I TTAA 2 cut(s) 87, 311
TseI GCWGC 3 cut(s) 12, 74, 206
TspDTI ATGAA 5 cut(s) 54, 144, 173, 243, 431
XapI RAATTY 2 cut(s) 161, 391
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.