MD15G1395100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000526
Physical Location & Seq
Reverse (-)
49458806 .. 49462783
3978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1395100.v1.1.491

Sequence Viewer

Length: 180 bp
ATGACAAAGAAGGACATAACTGGGAGTGGAGCTCCGGCTACTCTGCTGGTTTTTAATACTGAGGTTGGATTTTCCATGAAGAATATGGACTCGATCTGTAGTGTAGGACGTTCTACAAAGAAGGGGAAGAGACATCAGGGCTTTATTGGAGAAAAAGAGCTCCACGATTGGCTAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.46

Weight (kDa)

9.36

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 32, 160
AluI AGCT 2 cut(s) 32, 160
Alw21I GWGCWC 2 cut(s) 34, 162
Alw26I GTCTC 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 34, 162
Bbv12I GWGCWC 2 cut(s) 34, 162
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 176
BmuI ACTGGG 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 16, 48
Bse1I ACTGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 34, 162
BsiSI CCGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 34, 162
Bsp143I GATC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 25
BssMI GATC 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 174
CviAII CATG 1 cut(s) 76
CviJI RGCY 5 cut(s) 32, 38, 141, 160, 172
CviKI_1 RGCY 5 cut(s) 32, 38, 141, 160, 172
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Ecl136II GAGCTC 2 cut(s) 32, 160
Eco24I GRGCYC 2 cut(s) 34, 162
Eco53kI GAGCTC 2 cut(s) 32, 160
EcoICRI GAGCTC 2 cut(s) 32, 160
EcoT38I GRGCYC 2 cut(s) 34, 162
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 17, 77, 86
FatI CATG 1 cut(s) 75
FriOI GRGCYC 2 cut(s) 34, 162
FspBI CTAG 1 cut(s) 173
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 4, 115
HpyCH4IV ACGT 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 3 cut(s) 29, 37, 165
LpnPI CCDG 4 cut(s) 6, 32, 48, 122
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 109
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 91, 139
MhlI GDGCHC 2 cut(s) 34, 162
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 35
NdeII GATC 1 cut(s) 93
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 79
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 2 cut(s) 34, 162
SacI GAGCTC 2 cut(s) 34, 162
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 2 cut(s) 34, 162
SetI ASST 4 cut(s) 34, 66, 112, 162
SfcI CTRYAG 1 cut(s) 97
SgeI CNNG 7 cut(s) 33, 47, 59, 88, 103, 149, 176
SspMI CTAG 1 cut(s) 173
SstI GAGCTC 2 cut(s) 34, 162
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 92
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.