Rh6DG197900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000526
Physical Location & Seq
Forward (+)
35399077 .. 35399809
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG197900.1

Sequence Viewer

Length: 591 bp
ATGGATATCGTGTCAGATTTAATGAAGAACCAGATCAAAATTGTGGAATGGTATGTAGTGCCTGAATGGGTTAGTGAGAAGCCTTATCTTTCAAGCATATGCGATGTATATGGGGTTGACAAGATATTCGCAACAACTATGTTTATCCTCCCTTTAAAGCCAGATAAGACTGATGATGAGGATCTTAGAGGCAAAACAGCCAAGTCTCATGTTGTTCAACTTTCAGTTAAAGAAAGCATGTGTGATAATCAGGATTTGTGCAAGTACTACTTGTGGGGAGAAGCATTTCCAGTTAAACCTGGGAATAGAGTTGGTATAAGGTCGGATGTGGAGAAATGGGTGGTTACCCTAGCTTTCCCATTTGGAGAAAGACTGAGACGGGGAACATCATGTATTGGTGTCTTTGCTTTCTTGCCAACAGCAATGGTCACAAACTTCCCATTTGTGATTCAAGCTGACTTCATTCTTGCCTCTTCTCGAGAATGTATACTATTAGACAATGTATGGAACTTGGGAATTCTTGAATGTGTTCCAACAGCATTTGTCAATGCTTTCAAGTCTTGTATAAGACAACTCTCTCTGTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.26

Weight (kDa)

5.5

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 487
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 516
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 5 cut(s) 93, 218, 452, 524, 556
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 2 cut(s) 353, 455
AluI AGCT 2 cut(s) 353, 455
Alw26I GTCTC 2 cut(s) 210, 370
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 1 cut(s) 477
ApoI RAATTY 1 cut(s) 516
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 2 cut(s) 285, 528
AvaI CYCGRG 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 210, 370
BfaI CTAG 1 cut(s) 350
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 180
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 477
BsmAI GTCTC 2 cut(s) 210, 370
BsmBI CGTCTC 1 cut(s) 370
BsoBI CYCGRG 1 cut(s) 477
Bsp143I GATC 2 cut(s) 33, 181
BspCNI CTCAG 1 cut(s) 366
BspPI GGATC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 33, 181
BssNAI GTATAC 1 cut(s) 488
Bst1107I GTATAC 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 185, 374
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 36, 184
BstMAI GTCTC 2 cut(s) 210, 370
BstMBI GATC 2 cut(s) 33, 181
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BstZ17I GTATAC 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 331
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 209, 238, 390
CviJI RGCY 5 cut(s) 82, 160, 200, 353, 455
CviKI_1 RGCY 5 cut(s) 82, 160, 200, 353, 455
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 185, 374
DpnI GATC 2 cut(s) 35, 183
DpnII GATC 2 cut(s) 33, 181
DraI TTTAAA 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 516
EcoRII CCWGG 1 cut(s) 298
EcoRV GATATC 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 3 cut(s) 212, 241, 393
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 208, 237, 389
FauNDI CATATG 1 cut(s) 98
FblI GTMKAC 1 cut(s) 487
FokI GGATG 1 cut(s) 338
FspBI CTAG 1 cut(s) 350
Hin1II CATG 3 cut(s) 212, 241, 393
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 448
Hpy166II GTNNAC 2 cut(s) 118, 488
Hpy188I TCNGA 2 cut(s) 16, 325
Hpy188III TCNNGA 4 cut(s) 251, 477, 479, 521
Hpy8I GTNNAC 2 cut(s) 118, 488
HpyCH4V TGCA 1 cut(s) 261
HpyF3I CTNAG 2 cut(s) 185, 374
Hsp92II CATG 3 cut(s) 212, 241, 393
Kzo9I GATC 2 cut(s) 33, 181
LpnPI CCDG 7 cut(s) 44, 75, 174, 236, 285, 303, 312
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 343, 427
MalI GATC 2 cut(s) 35, 183
MboI GATC 2 cut(s) 33, 181
MboII GAAGA 2 cut(s) 37, 465
MflI RGATCY 1 cut(s) 181
MluCI AATT 2 cut(s) 39, 516
MmeI TCCRAC 2 cut(s) 303, 557
MnlI CCTC 4 cut(s) 158, 172, 182, 481
MroXI GAANNNNTTC 2 cut(s) 285, 528
MseI TTAA 5 cut(s) 20, 155, 228, 294, 589
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 98
NdeII GATC 2 cut(s) 33, 181
NlaIII CATG 3 cut(s) 212, 241, 393
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 477
PdmI GAANNNNTTC 2 cut(s) 285, 528
PfeI GAWTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 5 cut(s) 20, 155, 228, 294, 589
Sau3AI GATC 2 cut(s) 33, 181
ScaI AGTACT 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 301, 323, 355, 457
Sfr274I CTCGAG 1 cut(s) 477
SlaI CTCGAG 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 2 cut(s) 39, 516
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 298
TaqI TCGA 1 cut(s) 478
TasI AATT 2 cut(s) 39, 516
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 5 cut(s) 20, 155, 228, 294, 589
Tru9I TTAA 5 cut(s) 20, 155, 228, 294, 589
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 38, 451
XapI RAATTY 1 cut(s) 516
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 487
XmnI GAANNNNTTC 2 cut(s) 285, 528
XspI CTAG 1 cut(s) 350
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.