RLG00000008238

Serine/Threonine protein kinases, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
27568923 .. 27570002
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008238

Sequence Viewer

Length: 1080 bp
ATGTCTCTGGCAGCTTCATCCTCTTTAACTAGAGGAAATGTGCATTCCATTCTGCGTTTCATCAGGTTTTTAAGGGACAAACTTCTTCCTCCGGCCGATTTTATCTCTGCTATTAAAAAAGGTGACTGGCTGAAGACTTCCCTTGGCTACAGGTCTCCTGTAGGATCTGTTTTGTCAGATAAGGAGTGGAATATTCCCTTCATTGATCAGGACTTTTACGGTGATGAAATCTATAATTTCAGAACTGAACTTGAGTTGCTCGGTGTTGTAATCTCCTTCAACAGAAGTTACCAACTTCTAATTGACAACCTGAAGTCACCATCTTCCATAACTTCTTGGACACCTCAGGTTGTCATCTTAATGCTTGACTGTATGGCTCTATCCAAGTCATCTGATAAGCTTGTCAATGCATTGAAAGGAGCCAAGTGCCTGAAGACAAGTATTGGTTACAAGTGTCCAGGGGAATGTCTCTTGTTTCATCACGAATGGGGTTGCATTCTTCAGGTCGTCGATGGTCTTCCCGTGATTGATCATGAATTCTATGGGAGCAACATTTTCCGGTACATAAATGAACTGAAAAAAATTGGTGTGGTGGTTGATTTTGAAGGGGCTGCAAAAGTATTTGCTCGATGTTTCAGGCACTATGCATCATCAGCTTCCATCACCAAGGAAAATGTTGCATCATTGCTTCTGTGTTACAGAAAGCTGAATGGGACTCCATATAAATTTCCTGCTGATCTTAGGAGCTGCATTGGTAAGGTCAAGTGGTTGCGTAGTCGTTTTGGTGATTACAAATGTCCAAGGGAGTGCATTCTCTTTAGTCCCGGGTGGGAATCTATATCCCCAATAACTCTGCTTCCTTTCATTGATGATTCTGACAGTTACTATGGAAAGGGCATACATGAGTACAGAAAAGAGTTGAAGAGCTTGGGGGTTGTCGTCGAATACAAGGAAGGAGTTAAGTTTGTGGCTTCTGGTCTTTGTCTCCCTAGGGATGCCAGCCGTATTTTTTCCTGTAAATGCACTTGCATTGCTGGAATGCATACGTATTTTCGAGAAGAAAGGTTACGCCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

40.65

Weight (kDa)

8.94

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 536, 725
AcuI CTGAAG 4 cut(s) 152, 332, 452, 485
AfaI GTAC 2 cut(s) 563, 908
AgsI TTSAA 4 cut(s) 280, 415, 605, 922
AjnI CCWGG 1 cut(s) 457
AluBI AGCT 6 cut(s) 14, 400, 656, 706, 747, 927
AluI AGCT 6 cut(s) 14, 400, 656, 706, 747, 927
Alw26I GTCTC 4 cut(s) 9, 159, 473, 989
AlwI GGATC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 11, 611, 747
ApoI RAATTY 2 cut(s) 536, 725
AspA2I CCTAGG 1 cut(s) 989
AsuC2I CCSGG 2 cut(s) 825, 826
AsuHPI GGTGA 5 cut(s) 134, 233, 309, 655, 797
AvaI CYCGRG 1 cut(s) 824
AvrII CCTAGG 1 cut(s) 989
AxyI CCTNAGG 1 cut(s) 345
BarI GAAGNNNNNNTAC 1 cut(s) 1050
BbsI GAAGAC 3 cut(s) 140, 440, 509
BbvI GCAGC 3 cut(s) 23, 598, 734
BccI CCATC 3 cut(s) 328, 506, 668
BceAI ACGGC 1 cut(s) 987
BciT130I CCWGG 1 cut(s) 459
BclI TGATCA 2 cut(s) 205, 529
BcnI CCSGG 2 cut(s) 825, 826
BcoDI GTCTC 4 cut(s) 9, 159, 473, 989
BfaI CTAG 2 cut(s) 30, 990
BfmI CTRYAG 2 cut(s) 148, 159
BisI GCNGC 3 cut(s) 12, 612, 748
BlnI CCTAGG 1 cut(s) 989
BlsI GCNGC 3 cut(s) 13, 613, 749
Bme1390I CCNGG 3 cut(s) 459, 825, 826
BmeT110I CYCGRG 1 cut(s) 824
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 3 cut(s) 459, 825, 826
BmsI GCATC 3 cut(s) 656, 689, 985
BpiI GAAGAC 3 cut(s) 140, 440, 509
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 825, 826
BsaAI YACGTR 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 6 cut(s) 142, 458, 666, 800, 824, 989
BsaWI WCCGGW 1 cut(s) 558
Bse1I ACTGG 1 cut(s) 131
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 2 cut(s) 683, 1029
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 6 cut(s) 142, 458, 666, 800, 824, 989
BseGI GGATG 2 cut(s) 17, 1000
BseMI GCAATG 2 cut(s) 683, 1029
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 23, 598, 734
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 3 cut(s) 92, 559, 825
BslFI GGGAC 3 cut(s) 89, 727, 807
BsmAI GTCTC 4 cut(s) 9, 159, 473, 989
BsmFI GGGAC 3 cut(s) 89, 727, 807
BsmI GAATGC 4 cut(s) 43, 495, 810, 1044
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 824
Bsp143I GATC 4 cut(s) 164, 205, 529, 736
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 683, 1029
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 6 cut(s) 142, 458, 666, 800, 824, 989
BssMI GATC 4 cut(s) 164, 205, 529, 736
BssT1I CCWWGG 4 cut(s) 142, 666, 800, 989
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 3 cut(s) 221, 371, 881
Bst6I CTCTTC 1 cut(s) 917
BstBAI YACGTR 1 cut(s) 1047
BstC8I GCNNGC 1 cut(s) 1000
BstDEI CTNAG 2 cut(s) 345, 740
BstF5I GGATG 2 cut(s) 17, 1000
BstKTI GATC 4 cut(s) 167, 208, 532, 739
BstMAI GTCTC 4 cut(s) 9, 159, 473, 989
BstMBI GATC 4 cut(s) 164, 205, 529, 736
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 3 cut(s) 457, 823, 824
BstSFI CTRYAG 2 cut(s) 148, 159
BstSNI TACGTA 1 cut(s) 1047
BstV1I GCAGC 3 cut(s) 23, 598, 734
BstV2I GAAGAC 3 cut(s) 140, 440, 509
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BstZI CGGCCG 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 17, 1000
Cac8I GCNNGC 1 cut(s) 1000
CciI TCATGA 1 cut(s) 532
Cfr9I CCCGGG 1 cut(s) 824
Csp6I GTAC 2 cut(s) 562, 907
CviAII CATG 2 cut(s) 533, 902
CviQI GTAC 2 cut(s) 562, 907
DdeI CTNAG 2 cut(s) 345, 740
DpnI GATC 4 cut(s) 166, 207, 531, 738
DpnII GATC 4 cut(s) 164, 205, 529, 736
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 917
EarI CTCTTC 1 cut(s) 917
EclXI CGGCCG 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 1047
Eco130I CCWWGG 4 cut(s) 142, 666, 800, 989
Eco31I GGTCTC 1 cut(s) 159
Eco52I CGGCCG 1 cut(s) 93
Eco57I CTGAAG 4 cut(s) 152, 332, 452, 485
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 824
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 457
EcoT14I CCWWGG 4 cut(s) 142, 666, 800, 989
EcoT22I ATGCAT 3 cut(s) 412, 649, 1044
ErhI CCWWGG 4 cut(s) 142, 666, 800, 989
FaeI CATG 2 cut(s) 536, 905
FaqI GGGAC 3 cut(s) 89, 727, 807
FatI CATG 2 cut(s) 532, 901
FbaI TGATCA 2 cut(s) 205, 529
Fnu4HI GCNGC 3 cut(s) 12, 612, 748
FokI GGATG 2 cut(s) 4, 1007
Fsp4HI GCNGC 3 cut(s) 12, 612, 748
FspBI CTAG 2 cut(s) 30, 990
GluI GCNGC 3 cut(s) 12, 612, 748
HaeIII GGCC 1 cut(s) 95
HapII CCGG 3 cut(s) 92, 559, 825
Hin1II CATG 2 cut(s) 536, 905
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 715, 833, 872
HpaII CCGG 3 cut(s) 92, 559, 825
HphI GGTGA 5 cut(s) 134, 233, 309, 655, 797
Hpy188I TCNGA 4 cut(s) 178, 242, 394, 877
Hpy188III TCNNGA 5 cut(s) 209, 482, 533, 1055, 1077
Hpy99I CGWCG 2 cut(s) 512, 944
HpyAV CCTTC 4 cut(s) 208, 286, 599, 947
HpyCH4III ACNGT 3 cut(s) 221, 371, 881
HpyCH4IV ACGT 1 cut(s) 1046
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 2 cut(s) 345, 740
HpySE526I ACGT 1 cut(s) 1046
Hsp92II CATG 2 cut(s) 536, 905
Ksp22I TGATCA 2 cut(s) 205, 529
Kzo9I GATC 4 cut(s) 164, 205, 529, 736
LguI GCTCTTC 1 cut(s) 917
LmnI GCTCC 3 cut(s) 419, 546, 744
Lsp1109I GCAGC 3 cut(s) 23, 598, 734
LweI GCATC 3 cut(s) 656, 689, 985
MaeI CTAG 2 cut(s) 30, 990
MaeII ACGT 1 cut(s) 1046
MaeIII GTNAC 7 cut(s) 122, 287, 315, 446, 695, 881, 1065
MalI GATC 4 cut(s) 166, 207, 531, 738
MboI GATC 4 cut(s) 164, 205, 529, 736
MboII GAAGA 8 cut(s) 77, 145, 315, 445, 491, 509, 934, 1070
MflI RGATCY 1 cut(s) 164
MluCI AATT 5 cut(s) 235, 300, 536, 582, 725
MlyI GAGTC 1 cut(s) 709
MnlI CCTC 4 cut(s) 26, 31, 99, 354
Mph1103I ATGCAT 3 cut(s) 412, 649, 1044
MseI TTAA 5 cut(s) 26, 71, 114, 359, 960
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 92, 559, 825
MspR9I CCNGG 3 cut(s) 459, 825, 826
Mva1269I GAATGC 4 cut(s) 43, 495, 810, 1044
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 653
NciI CCSGG 2 cut(s) 825, 826
NdeII GATC 4 cut(s) 164, 205, 529, 736
NlaIII CATG 2 cut(s) 536, 905
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 2 cut(s) 122, 315
NsiI ATGCAT 3 cut(s) 412, 649, 1044
PagI TCATGA 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 917
PctI GAATGC 4 cut(s) 43, 495, 810, 1044
PfeI GAWTC 2 cut(s) 833, 872
PkrI GCNGC 3 cut(s) 13, 613, 749
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 1047
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 421
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 2 cut(s) 563, 908
RsaNI GTAC 2 cut(s) 562, 907
RseI CAYNNNNRTG 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 917
SaqAI TTAA 5 cut(s) 26, 71, 114, 359, 960
SatI GCNGC 3 cut(s) 12, 612, 748
Sau3AI GATC 4 cut(s) 164, 205, 529, 736
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 3 cut(s) 459, 825, 826
SfaNI GCATC 3 cut(s) 656, 689, 985
SfcI CTRYAG 2 cut(s) 148, 159
SmaI CCCGGG 1 cut(s) 826
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SnaBI TACGTA 1 cut(s) 1047
Sse9I AATT 5 cut(s) 235, 300, 536, 582, 725
SspI AATATT 1 cut(s) 193
SspMI CTAG 2 cut(s) 30, 990
StyD4I CCNGG 3 cut(s) 457, 823, 824
StyI CCWWGG 4 cut(s) 142, 666, 800, 989
TaaI ACNGT 3 cut(s) 221, 371, 881
TaiI ACGT 1 cut(s) 1049
TaqI TCGA 4 cut(s) 510, 628, 942, 1054
TasI AATT 5 cut(s) 235, 300, 536, 582, 725
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 2 cut(s) 833, 872
Tru1I TTAA 5 cut(s) 26, 71, 114, 359, 960
Tru9I TTAA 5 cut(s) 26, 71, 114, 359, 960
TseFI GTSAC 2 cut(s) 122, 315
TseI GCWGC 3 cut(s) 11, 611, 747
Tsp45I GTSAC 2 cut(s) 122, 315
TspDTI ATGAA 8 cut(s) 6, 49, 190, 240, 467, 549, 585, 853
TspMI CCCGGG 1 cut(s) 824
XapI RAATTY 2 cut(s) 536, 725
XmaI CCCGGG 1 cut(s) 824
XmaJI CCTAGG 1 cut(s) 989
XspI CTAG 2 cut(s) 30, 990
Zsp2I ATGCAT 3 cut(s) 412, 649, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.