RLG00000035187

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000526
Physical Location & Seq
Forward (+)
62532535 .. 62536601
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035187

Sequence Viewer

Length: 570 bp
ATGACACCTCACTCCACCGAGAGGGGTTTCTGGGTTATTGGCTTAACCTTGAGGTGGAGGTGTGTTGAGAAAGGCAGGAGAGCTGCTGAGGTTTCATATGCTACTGTTGTAAGACCAATAATCAAGAATGCTGAAGACAATGAGTACAAAGAAGGTGTACAACCAACTCTGGAGTTCATGCTGACCAAGAAAGACATAACTAGGACTGGAGCACCAGCTACTCTTTTGGTTTTCAATAATGAGGTTGGCTTTTCCAGGGAGAACATAGACTCCATTTGCAGCATTGGCTGTTCTACCAAGAAAGGGAAGAGACGTCAGGGCTTTATTGGGGAGAAAGATAATGTAACTGCAAAAGACTTATGTCCTTGGGCCGACGACACATATCGGCGATGGTCAAGGCTAGTGGTTCCTAGATCTTTTCTTCCCCTTGGTGGTGCAGTGGGTGGTGGAGGTCTAGTGGTTGGCATGTCTACTGCGAGTGGCATTATTGACGACGGCGGTGGCGGTTATGATTTGTCAACAAAGGTAATGTCTACTAGGGCTTCTCAAAGTTGGGGTATTGCGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

9.27

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000526)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28020 AT3G48770 AT3G48770
fragaria_vesca FvH4_5g09020 FvH4_5g09020
malus_domestica MD06G1092400.v1.1 MD06G1134600.v1.1 MD06G1134700.v1.1 MD06G1134800.v1.1 MD06G1135200.v1.1 MD06G1135400.v1.1 MD06G1135500.v1.1 MD08G1137600.v1.1 MD15G1395100.v1.1
prunus_persica Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145400_v2.0.a1 Prupe.5G145600_v2.0.a1 Prupe.5G145800_v2.0.a1 Prupe.5G145900_v2.0.a1
pyrus_communis pycom06g12550 pycom06g12570 pycom06g12580 pycom06g12590 pycom06g12610 pycom06g12630 pycom06g12640 pycom06g12650 pycom08g06280
rosa_chinensis RchiOBHm_Chr6g0249321 RchiOBHm_Chr6g0275111 RchiOBHm_Chr7g0189191 RchiOBHm_Chr7g0189261
rosa_laevigata RLG00000004622 RLG00000004623 RLG00000008237 RLG00000008238 RLG00000023303 RLG00000035187
rosa_multiflora Rmu_co8294311.1_g000001 Rmu_co8389833.1_g000001 Rmu_sc0001044.1_g000004 Rmu_sc0001329.1_g000011 Rmu_sc0006012.1_g000010 Rmu_sc0007286.1_g000032 Rmu_sc0009360.1_g000016 Rmu_sc0011817.1_g000001 Rmu_sc0015050.1_g000001
rosa_roxburghii Rroxscaffold_1G00064000 Rroxscaffold_3G00265460 Rroxscaffold_3G00265580 Rroxscaffold_3G00265640 Rroxscaffold_3G00265690 Rroxscaffold_3G00265700 Rroxscaffold_7G00193620 Rroxscaffold_7G00204550 Rroxscaffold_7G00217350
rosa_rugosa Rorug01G0465500 Rorug06G0088500 Rorug06G0496700 Rorug06G0496700
rosa_samantha Rh1AG064800 Rh2BG015100 Rh2BG493500 Rh2DG017300 Rh2DG502500 Rh4BG208500 Rh5BG528500 Rh5CG552900 Rh6CG207800 Rh6DG197900 Rh6DG198000 Rh7AG101300 Rh7AG101400 Rh7AG101600 Rh7BG104100 Rh7BG104200 Rh7CG105600 Rh7CG105700 Rh7DG103200 Rh7DG103400
rosa_wichuraiana Rw1G007300 Rw5G034670 Rw7G008750 Rw7G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 470, 533
AciI CCGC 2 cut(s) 498, 504
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 2 cut(s) 146, 159
AfiI CCNNNNNNNGG 4 cut(s) 21, 54, 303, 431
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 254
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 83, 218
AluI AGCT 2 cut(s) 83, 218
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 304
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 83, 279
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AspLEI GCGC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 70, 291
BccI CCATC 1 cut(s) 384
BceAI ACGGC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 5 cut(s) 201, 401, 411, 455, 537
BglII AGATCT 1 cut(s) 413
BisI GCNGC 2 cut(s) 84, 280
BlsI GCNGC 2 cut(s) 85, 281
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 191, 228
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 255, 365, 427
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 441, 471
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 54, 303, 431
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 255, 365, 427
BseLI CCNNNNNNNGG 4 cut(s) 21, 54, 303, 431
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 70, 291
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 214
BslI CCNNNNNNNGG 4 cut(s) 21, 54, 303, 431
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 1 cut(s) 413
BspACI CCGC 2 cut(s) 498, 504
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 408
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 255, 365, 427
BssMI GATC 1 cut(s) 413
BssNI GRCGYC 1 cut(s) 313
BssT1I CCWWGG 2 cut(s) 365, 427
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 565
BstKTI GATC 1 cut(s) 416
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 469
BstPAI GACNNNNGTC 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 70, 291
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BsuRI GGCC 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
CfoI GCGC 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 145, 158
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 2 cut(s) 178, 466
CviJI RGCY 9 cut(s) 42, 83, 218, 249, 288, 321, 371, 400, 542
CviKI_1 RGCY 9 cut(s) 42, 83, 218, 249, 288, 321, 371, 400, 542
CviQI GTAC 2 cut(s) 145, 158
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 415
DpnII GATC 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 365, 427
Eco57I CTGAAG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 365, 427
ErhI CCWWGG 2 cut(s) 365, 427
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 2 cut(s) 181, 469
FaiI YATR 9 cut(s) 97, 99, 179, 197, 266, 361, 382, 467, 510
FatI CATG 2 cut(s) 177, 465
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 2 cut(s) 470, 533
Fnu4HI GCNGC 2 cut(s) 84, 280
Fsp4HI GCNGC 2 cut(s) 84, 280
FspBI CTAG 5 cut(s) 201, 401, 411, 455, 537
GlaI GCGC 1 cut(s) 564
GluI GCNGC 2 cut(s) 84, 280
GsuI CTGGAG 2 cut(s) 191, 228
HaeIII GGCC 1 cut(s) 371
HhaI GCGC 1 cut(s) 565
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 2 cut(s) 181, 469
Hin6I GCGC 1 cut(s) 563
HinP1I GCGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 4 cut(s) 158, 471, 519, 534
Hpy188III TCNNGA 2 cut(s) 124, 170
Hpy8I GTNNAC 4 cut(s) 158, 471, 519, 534
Hpy99I CGWCG 2 cut(s) 377, 497
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 279, 350, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 181, 469
HspAI GCGC 1 cut(s) 563
Kzo9I GATC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 16, 61, 155, 192, 228, 241, 268, 302
Lsp1109I GCAGC 2 cut(s) 70, 291
MaeI CTAG 5 cut(s) 201, 401, 411, 455, 537
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 343
MalI GATC 1 cut(s) 415
MboI GATC 1 cut(s) 413
MboII GAAGA 3 cut(s) 146, 319, 413
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 214
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 7 cut(s) 15, 18, 45, 51, 82, 235, 443
MseI TTAA 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 256
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 413
NlaIII CATG 2 cut(s) 181, 469
NlaIV GGNNCC 1 cut(s) 408
NspI RCATGY 1 cut(s) 469
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 85, 281
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PshAI GACNNNNGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 2 cut(s) 146, 159
RsaNI GTAC 2 cut(s) 145, 158
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 84, 280
Sau3AI GATC 1 cut(s) 413
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SsiI CCGC 2 cut(s) 498, 504
SspMI CTAG 5 cut(s) 201, 401, 411, 455, 537
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 2 cut(s) 365, 427
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 316
TatI WGTACW 2 cut(s) 144, 157
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 444
TseI GCWGC 2 cut(s) 83, 279
TspDTI ATGAA 2 cut(s) 84, 166
TspRI CASTG 1 cut(s) 444
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 470, 533
XspI CTAG 5 cut(s) 201, 401, 411, 455, 537
ZraI GACGTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.