Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Forward (+)

5471647 .. 5474785

Gene Structure 3139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCATTCGCCGCCTCTCTCTCTTCCCCTCTCCACTTCCGCAACCCCAACCCTCTCTTCTCTCCCAAGCCCACCAAACCCTCCAAACCCTTCACCCTCAAGCCCCTCCCCGCCGTCCCTCCCTCCCTCGCCTCTGACGTCGACAGCGCCACCATCGCCGCTATCGGCGGCGGCTCCGTCGCCGCCCTCGCCGCCGCGCTCTCCCTCGCCGACCCCGAGCGCCGTCGCAAGCTCCAGGCCGAGGAGGTCGGCGGCGGCGACAAGGAGGTCGTCAAGGACTACTTCAACAAGTCAGGGTTCGAGCGGTGGAAGAAGATTTACGGCGAGACCGATGACGTCAACACTGTCCAGAGGGACATCAGGCTCGGCCACTCCAAGACCGTCGAGAATGTGATGAAGATGTTGTTGGATGAAGGCCCGCTTGCTGGCGTCACCGTCTGCGACGCCGGCTGCGGTACCGGATGCCTCGCTATCCCGCTCGCTAAGGAAGGCGCCGTCGTAACGGCCTCCGATATTTCCGCCGCGATGGTCGCCGAGGCCGAGAAGCAGGCAAGAGAGCAGCTGGATTTGGGGAAAGAAGGAGTCATATTGCCGAAATTCGAAGTGAGTGATCTAGAGAGCTTGGGAGGGAAGTATGACACAGTAGTGTGTCTAGATGTTTTGATTCATTATCCACAGAGCAAGGCTGATGGGATGATTGCCCACCTTGCTTCGCTGGCCGAGAATCGGTTGCTTCTGAGCTTTGCACCAAAGACATTGTATTACGATATCCTAAAGAGGATAGGAGAGCTGTTCCCCGGGCCTTCCAAGGCCACGAGGGCGTATCTGCACTCTGAGGCGGATGTGGAGAGGGCTTTGAAGAAGGTTGGGTGGAGGATAAGGAAGAGAGGACTAACAACTACACAGTTTTATTTTTCGAGGCTCGTGGAGGCTGTTCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

315

Amino Acids

33.88

Weight (kDa)

8.22

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	142 - 294	1.9e-11	Methyltransferase domain
Methyltransf_31	PF13847	143 - 226	1.1e-08	Methyltransferase domain
Methyltransf_25	PF13649	146 - 238	1.8e-12	Methyltransferase domain
Methyltransf_12	PF08242	148 - 239	5.4e-11	Methyltransferase domain
Methyltransf_11	PF08241	148 - 225	4.1e-09	Methyltransferase domain
Mg-por_mtran_C	PF07109	217 - 312	1.3e-36	Magnesium-protoporphyrin IX methyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	2 cut(s)	141, 339
Acc65I	GGTACC	1 cut(s)	455
AccB1I	GGYRCC	2 cut(s)	455, 491
AccBSI	CCGCTC	2 cut(s)	304, 478
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	2 cut(s)	197, 524
AcoI	YGGCCR	2 cut(s)	367, 717
AcsI	RAATTY	1 cut(s)	596
AcyI	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	3 cut(s)	241, 425, 726
AgsI	TTSAA	2 cut(s)	286, 859
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 389, 421
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	232, 562, 621, 741, 790
AluI	AGCT	5 cut(s)	232, 562, 621, 741, 790
Alw26I	GTCTC	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	215, 797
AoxI	GGCC	8 cut(s)	237, 367, 415, 504, 537, 717, 800, 810
ApeKI	GCWGC	2 cut(s)	450, 559
ApoI	RAATTY	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	455
AspLEI	GCGC	4 cut(s)	149, 199, 222, 494
AspS9I	GGNCC	2 cut(s)	416, 800
AsuC2I	CCSGG	2 cut(s)	798, 799
AsuHPI	GGTGA	2 cut(s)	85, 424
AsuII	TTCGAA	1 cut(s)	600
AvaI	CYCGRG	2 cut(s)	215, 797
BanI	GGYRCC	2 cut(s)	455, 491
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BauI	CACGAG	2 cut(s)	814, 923
BbvI	GCAGC	2 cut(s)	437, 571
BccI	CCATC	3 cut(s)	161, 520, 683
BceAI	ACGGC	5 cut(s)	98, 207, 337, 479, 519
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	798, 799
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	614, 653
BfoI	RGCGCY	3 cut(s)	150, 223, 495
BglI	GCCNNNNNGGC	1 cut(s)	818
Bme1390I	CCNGG	3 cut(s)	236, 798, 799
BmeT110I	CYCGRG	2 cut(s)	215, 797
BmgT120I	GGNCC	2 cut(s)	416, 800
BmiI	GGNNCC	3 cut(s)	175, 457, 493
BmrFI	CCNGG	3 cut(s)	236, 798, 799
BmsI	GCATC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	798, 799
BsaHI	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	240, 534, 796, 797, 807
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 425, 726
Bse118I	RCCGGY	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	5 cut(s)	240, 534, 796, 797, 807
BseGI	GGATG	4 cut(s)	415, 467, 699, 847
BseLI	CCNNNNNNNGG	3 cut(s)	241, 425, 726
BseMII	CTCAG	2 cut(s)	728, 825
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	437, 571
BsgI	GTGCAG	1 cut(s)	812
Bsh1236I	CGCG	2 cut(s)	197, 524
BshFI	GGCC	8 cut(s)	239, 369, 417, 506, 539, 719, 802, 812
BshNI	GGYRCC	2 cut(s)	455, 491
BsiHKCI	CYCGRG	2 cut(s)	215, 797
BsiSI	CCGG	3 cut(s)	447, 459, 798
BslFI	GGGAC	2 cut(s)	101, 368
BslI	CCNNNNNNNGG	3 cut(s)	241, 425, 726
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	2 cut(s)	101, 368
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	8 cut(s)	239, 369, 417, 506, 539, 719, 802, 812
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	2 cut(s)	215, 797
Bsp119I	TTCGAA	1 cut(s)	600
Bsp143I	GATC	1 cut(s)	610
BspANI	GGCC	8 cut(s)	239, 369, 417, 506, 539, 719, 802, 812
BspCNI	CTCAG	2 cut(s)	729, 826
BspFNI	CGCG	2 cut(s)	197, 524
BspLI	GGNNCC	3 cut(s)	175, 457, 493
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	455, 491
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	2 cut(s)	304, 478
BsrFI	RCCGGY	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	5 cut(s)	240, 534, 796, 797, 807
BssMI	GATC	1 cut(s)	610
BssNI	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
BssSI	CACGAG	2 cut(s)	814, 923
BssT1I	CCWWGG	1 cut(s)	807
Bst2BI	CACGAG	2 cut(s)	814, 923
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	5 cut(s)	346, 382, 436, 643, 906
Bst6I	CTCTTC	3 cut(s)	28, 62, 878
BstACI	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	8 cut(s)	230, 419, 423, 427, 448, 480, 549, 717
BstDEI	CTNAG	3 cut(s)	483, 737, 834
BstF5I	GGATG	4 cut(s)	415, 467, 699, 847
BstFNI	CGCG	2 cut(s)	197, 524
BstH2I	RGCGCY	3 cut(s)	150, 223, 495
BstHHI	GCGC	4 cut(s)	149, 199, 222, 494
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 155, 188, 191, 447, 530, 707, 716, 818
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	3 cut(s)	234, 796, 797
BstUI	CGCG	2 cut(s)	197, 524
BstV1I	GCAGC	2 cut(s)	437, 571
BsuRI	GGCC	8 cut(s)	239, 369, 417, 506, 539, 719, 802, 812
BtgZI	GCGATG	2 cut(s)	139, 539
BtsCI	GGATG	4 cut(s)	415, 467, 699, 847
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	8 cut(s)	230, 419, 423, 427, 448, 480, 549, 717
CfoI	GCGC	4 cut(s)	149, 199, 222, 494
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	416, 800
Cfr9I	CCCGGG	1 cut(s)	797
CseI	GACGC	2 cut(s)	418, 452
Csp6I	GTAC	1 cut(s)	456
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	3 cut(s)	483, 737, 834
DinI	GGCGCC	1 cut(s)	493
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	367, 717
Eam1104I	CTCTTC	3 cut(s)	28, 62, 878
EarI	CTCTTC	3 cut(s)	28, 62, 878
EciI	GGCGGA	2 cut(s)	508, 854
Eco130I	CCWWGG	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	769
Eco88I	CYCGRG	2 cut(s)	215, 797
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	807
EgeI	GGCGCC	1 cut(s)	493
EheI	GGCGCC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	807
FaiI	YATR	3 cut(s)	587, 636, 941
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 405, 437
FaqI	GGGAC	2 cut(s)	101, 368
FauI	CCCGC	3 cut(s)	118, 426, 483
FblI	GTMKAC	1 cut(s)	141
FokI	GGATG	4 cut(s)	422, 474, 706, 854
FspBI	CTAG	2 cut(s)	614, 653
GlaI	GCGC	4 cut(s)	148, 198, 221, 493
GsuI	CTGGAG	1 cut(s)	218
HaeII	RGCGCY	3 cut(s)	150, 223, 495
HaeIII	GGCC	8 cut(s)	239, 369, 417, 506, 539, 719, 802, 812
HapII	CCGG	3 cut(s)	447, 459, 798
HgaI	GACGC	2 cut(s)	418, 452
HhaI	GCGC	4 cut(s)	149, 199, 222, 494
Hin1I	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
Hin6I	GCGC	4 cut(s)	147, 197, 220, 492
HinP1I	GCGC	4 cut(s)	147, 197, 220, 492
HincII	GTYRAC	2 cut(s)	142, 340
HindII	GTYRAC	2 cut(s)	142, 340
HinfI	GANTC	3 cut(s)	582, 664, 724
HpaII	CCGG	3 cut(s)	447, 459, 798
HphI	GGTGA	2 cut(s)	85, 424
Hpy166II	GTNNAC	2 cut(s)	142, 340
Hpy188I	TCNGA	4 cut(s)	136, 511, 738, 835
Hpy188III	TCNNGA	4 cut(s)	349, 385, 614, 653
Hpy8I	GTNNAC	2 cut(s)	142, 340
Hpy99I	CGWCG	6 cut(s)	143, 182, 228, 386, 446, 500
HpyAV	CCTTC	6 cut(s)	100, 407, 482, 572, 813, 856
HpyCH4III	ACNGT	5 cut(s)	346, 382, 436, 643, 906
HpyCH4IV	ACGT	2 cut(s)	138, 336
HpyCH4V	TGCA	2 cut(s)	746, 829
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 155, 188, 191, 447, 530, 707, 716, 818
HpyF3I	CTNAG	3 cut(s)	483, 737, 834
HpySE526I	ACGT	2 cut(s)	138, 336
Hsp92I	GRCGYC	5 cut(s)	138, 336, 429, 444, 492
HspAI	GCGC	4 cut(s)	147, 197, 220, 492
KasI	GGCGCC	1 cut(s)	491
KpnI	GGTACC	1 cut(s)	459
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	2 cut(s)	179, 237
Lsp1109I	GCAGC	2 cut(s)	437, 571
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	2 cut(s)	614, 653
MaeII	ACGT	2 cut(s)	138, 336
MaeIII	GTNAC	2 cut(s)	430, 499
MalI	GATC	1 cut(s)	612
MbiI	CCGCTC	2 cut(s)	304, 478
MboI	GATC	1 cut(s)	610
MboII	GAAGA	7 cut(s)	15, 49, 322, 325, 409, 871, 895
MluCI	AATT	1 cut(s)	596
Mly113I	GGCGCC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	3 cut(s)	447, 459, 798
MspR9I	CCNGG	3 cut(s)	236, 798, 799
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	197, 524
MwoI	GCNNNNNNNGC	9 cut(s)	11, 155, 188, 191, 447, 530, 707, 716, 818
NaeI	GCCGGC	1 cut(s)	448
NarI	GGCGCC	1 cut(s)	492
NciI	CCSGG	2 cut(s)	798, 799
NdeII	GATC	1 cut(s)	610
NgoMIV	GCCGGC	1 cut(s)	446
NlaIV	GGNNCC	3 cut(s)	175, 457, 493
NmeAIII	GCCGAG	5 cut(s)	265, 345, 559, 565, 745
NmuCI	GTSAC	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	600
OliI	CACNNNNGTG	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	5 cut(s)	135, 213, 255, 327, 537
PctI	GAATGC	1 cut(s)	5
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	664, 724
PleI	GAGTC	1 cut(s)	590
PluTI	GGCGCC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	175, 457, 493
PspPI	GGNCC	2 cut(s)	416, 800
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	644
SalI	GTCGAC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	2 cut(s)	416, 800
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	3 cut(s)	236, 798, 799
SfaNI	GCATC	1 cut(s)	452
SfoI	GGCGCC	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	600
SmaI	CCCGGG	1 cut(s)	799
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	596
SspDI	GGCGCC	1 cut(s)	491
SspMI	CTAG	2 cut(s)	614, 653
StyD4I	CCNGG	3 cut(s)	234, 796, 797
StyI	CCWWGG	1 cut(s)	807
TaaI	ACNGT	5 cut(s)	346, 382, 436, 643, 906
TaiI	ACGT	2 cut(s)	141, 339
TaqI	TCGA	5 cut(s)	141, 300, 384, 600, 917
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	664, 724
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	450, 559
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	410, 426, 656
TspGWI	ACGGA	1 cut(s)	166
TspMI	CCCGGG	1 cut(s)	797
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	2 cut(s)	613, 652
XmaI	CCCGGG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	614, 653
ZraI	GACGTC	2 cut(s)	139, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.