Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Reverse (-)

24063597 .. 24065253

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1147900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATCCTCCGCCTCACTATCCTCCCCACTCCACTTCCGCAACCCAAATCCCAGGCCCATATTCTCCCCAAAGCCAACAAAACCTACCACCCTAAAACCCCCCACCACCGTCGTCAAGCCACTCTTCGCCCTCCCGCCTCCTGCCGAAGTCGACAGCGCCACAATTGCCGCCATTGGCGGCGGTTCGGTGGCCGCCCTCGCCGCCGCGCTTTCCTTATCCGACCCCGAAAAGCGTCGCCGCCTCCAGGCCGAAGAGGTCGGCGGCGGCGACAAGGAGGTGGTGAAGGACTACTTCAACAAGTCCGGGTTCGAGCGGTGGAAGAAGATATACGGAGAGACGGATGACGTCAACAGAGTTCAGAGGGACATCAGGCTCGGGCACTCCAAGACCGTTGAGAATGTGATGAAGATGTTGACCGATGAGGGCCCACTTCAGGGGGTCTCTGTGTGCGACGCCGGGTGTGGGACTGGGTGCTTGGCGATTCCGTTGGCGAAGGAAGGGGCGTTTGTCACGGCTGCTGATATTTCAGCTGCCATGGTTGCGGAGGCTGAGAAGCAGGCAAAAGAGCAGCTTCAGTTAAGCAATGGCTTCTCGGCAGGACCAGTACTGCCAAAATTCGAAGTGAAGGATTTAGAGAGCTTGGATGGGAAGTACGACACGGTGGTCTGTCTAGATGTTTTGATTCATTACCCGCAGAGCAAGGCTGACGGGATGATTGCGCATCTTGCCTCATTGGCGGAGAATCGGTTGCTTATAAGTTTTGCACCAAAGACATTGTATTATGATGTGCTAAAGAGGATAGGAGAGTTGTTCCCGGGGCCTTCGAAGGCAACAAGAGCATATCTACACGCAGAGGCAGATGTGGAGAGGGCTTTGAAGAAGGTTGGATGGAGGATAAGGAAGAGAGGACTAACCACTACACAATTTTATTTTTCGAGGCTGGTCGAGGCTGTTCCTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

323

Amino Acids

34.83

Weight (kDa)

8.99

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	145 - 300	7.5e-10	Methyltransferase domain
Methyltransf_31	PF13847	147 - 233	5.9e-09	Methyltransferase domain
Methyltransf_25	PF13649	150 - 245	1.3e-12	Methyltransferase domain
Methyltransf_12	PF08242	152 - 246	1.7e-10	Methyltransferase domain
Methyltransf_11	PF08241	152 - 232	9.4e-10	Methyltransferase domain
Mg-por_mtran_C	PF07109	224 - 319	1.3e-36	Magnesium-protoporphyrin IX methyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
AasI	GACNNNNNNGTC	1 cut(s)	665
AatII	GACGTC	1 cut(s)	351
Acc16I	TGCGCA	1 cut(s)	723
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	2 cut(s)	419, 560
AcyI	GRCGYC	2 cut(s)	348, 456
AfaI	GTAC	2 cut(s)	609, 656
AfiI	CCNNNNNNNGG	4 cut(s)	247, 436, 437, 465
AgsI	TTSAA	2 cut(s)	298, 880
AjnI	CCWGG	2 cut(s)	53, 246
AluBI	AGCT	3 cut(s)	533, 574, 642
AluI	AGCT	3 cut(s)	533, 574, 642
Alw26I	GTCTC	2 cut(s)	332, 448
Ama87I	CYCGRG	2 cut(s)	377, 817
AoxI	GGCC	5 cut(s)	56, 192, 249, 427, 821
ApaI	GGGCCC	1 cut(s)	431
ApeKI	GCWGC	3 cut(s)	518, 533, 571
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	3 cut(s)	161, 211, 724
AspS9I	GGNCC	5 cut(s)	57, 427, 428, 602, 821
AsuC2I	CCSGG	4 cut(s)	307, 460, 818, 819
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	2 cut(s)	621, 827
AvaI	CYCGRG	2 cut(s)	377, 817
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	2 cut(s)	384, 431
BanII	GRGCYC	1 cut(s)	431
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbvI	GCAGC	3 cut(s)	505, 520, 583
BccI	CCATC	2 cut(s)	641, 885
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	55, 248
BcnI	CCSGG	4 cut(s)	307, 460, 818, 819
BcoDI	GTCTC	2 cut(s)	332, 448
BfaI	CTAG	1 cut(s)	674
BfoI	RGCGCY	1 cut(s)	162
BglI	GCCNNNNNGGC	1 cut(s)	737
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	6 cut(s)	55, 248, 307, 460, 818, 819
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	2 cut(s)	377, 817
BmgT120I	GGNCC	5 cut(s)	57, 427, 428, 602, 821
BmiI	GGNNCC	2 cut(s)	429, 822
BmrFI	CCNGG	6 cut(s)	55, 248, 307, 460, 818, 819
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	14, 733
BmuI	ACTGGG	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	230
Bpu14I	TTCGAA	2 cut(s)	621, 827
BpuMI	CCSGG	4 cut(s)	307, 460, 818, 819
BsaHI	GRCGYC	2 cut(s)	348, 456
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	4 cut(s)	53, 537, 817, 818
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 436, 437, 465
Bse1I	ACTGG	2 cut(s)	475, 605
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	2 cut(s)	55, 248
BseDI	CCNNGG	4 cut(s)	53, 537, 817, 818
BseGI	GGATG	5 cut(s)	5, 349, 652, 720, 896
BseLI	CCNNNNNNNGG	4 cut(s)	247, 436, 437, 465
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	2 cut(s)	475, 605
BseSI	GKGCMC	2 cut(s)	384, 431
BseXI	GCAGC	3 cut(s)	505, 520, 583
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	5 cut(s)	58, 194, 251, 429, 823
BsiHKCI	CYCGRG	2 cut(s)	377, 817
BsiSI	CCGG	3 cut(s)	306, 459, 818
BslFI	GGGAC	2 cut(s)	380, 481
BslI	CCNNNNNNNGG	4 cut(s)	247, 436, 437, 465
BsmAI	GTCTC	2 cut(s)	332, 448
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	380, 481
BsnI	GGCC	5 cut(s)	58, 194, 251, 429, 823
Bso31I	GGTCTC	1 cut(s)	448
BsoBI	CYCGRG	2 cut(s)	377, 817
Bsp119I	TTCGAA	2 cut(s)	621, 827
Bsp120I	GGGCCC	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	384, 431
Bsp19I	CCATGG	1 cut(s)	537
BspANI	GGCC	5 cut(s)	58, 194, 251, 429, 823
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	429, 822
BspT104I	TTCGAA	2 cut(s)	621, 827
BspTNI	GGTCTC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	475, 605
BssECI	CCNNGG	4 cut(s)	53, 537, 817, 818
BssNI	GRCGYC	2 cut(s)	348, 456
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	55, 248
Bst4CI	ACNGT	3 cut(s)	112, 394, 664
Bst6I	CTCTTC	3 cut(s)	131, 249, 899
BstACI	GRCGYC	2 cut(s)	348, 456
BstBI	TTCGAA	2 cut(s)	621, 827
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	552, 963
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	5 cut(s)	5, 349, 652, 720, 896
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	3 cut(s)	161, 211, 724
BstMAI	GTCTC	2 cut(s)	332, 448
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 167, 200, 203, 542, 728, 737, 839, 959
BstNI	CCWGG	2 cut(s)	55, 248
BstSCI	CCNGG	6 cut(s)	53, 246, 305, 458, 816, 817
BstSLI	GKGCMC	2 cut(s)	384, 431
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	505, 520, 583
BsuRI	GGCC	5 cut(s)	58, 194, 251, 429, 823
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	5 cut(s)	5, 349, 652, 720, 896
Cac8I	GCNNGC	1 cut(s)	561
CfoI	GCGC	3 cut(s)	161, 211, 724
Cfr13I	GGNCC	5 cut(s)	57, 427, 428, 602, 821
Cfr9I	CCCGGG	1 cut(s)	817
CseI	GACGC	2 cut(s)	224, 464
Csp6I	GTAC	2 cut(s)	608, 655
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	2 cut(s)	608, 655
DdeI	CTNAG	2 cut(s)	552, 963
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	131, 249, 899
EarI	CTCTTC	3 cut(s)	131, 249, 899
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	2 cut(s)	419, 560
Eco88I	CYCGRG	2 cut(s)	377, 817
EcoO109I	RGGNCCY	2 cut(s)	427, 821
EcoRII	CCWGG	2 cut(s)	53, 246
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	541
FaiI	YATR	6 cut(s)	62, 331, 539, 758, 786, 844
FalI	AAGNNNNNCTT	6 cut(s)	110, 142, 278, 310, 558, 590
FaqI	GGGAC	2 cut(s)	380, 481
FatI	CATG	1 cut(s)	537
FauI	CCCGC	2 cut(s)	144, 702
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	4 cut(s)	356, 659, 727, 903
FriOI	GRGCYC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	674
FspI	TGCGCA	1 cut(s)	723
GlaI	GCGC	3 cut(s)	160, 210, 723
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	5 cut(s)	58, 194, 251, 429, 823
HapII	CCGG	3 cut(s)	306, 459, 818
HgaI	GACGC	2 cut(s)	224, 464
HhaI	GCGC	3 cut(s)	161, 211, 724
Hin1I	GRCGYC	2 cut(s)	348, 456
Hin1II	CATG	1 cut(s)	541
Hin6I	GCGC	3 cut(s)	159, 209, 722
HinP1I	GCGC	3 cut(s)	159, 209, 722
HincII	GTYRAC	3 cut(s)	154, 352, 417
HindII	GTYRAC	3 cut(s)	154, 352, 417
HinfI	GANTC	3 cut(s)	484, 685, 745
HpaII	CCGG	3 cut(s)	306, 459, 818
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	154, 352, 417
Hpy188I	TCNGA	2 cut(s)	223, 363
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	3 cut(s)	154, 352, 417
Hpy99I	CGWCG	3 cut(s)	116, 240, 458
HpyAV	CCTTC	7 cut(s)	280, 490, 494, 622, 823, 834, 877
HpyCH4III	ACNGT	3 cut(s)	112, 394, 664
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	767
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 167, 200, 203, 542, 728, 737, 839, 959
HpyF3I	CTNAG	2 cut(s)	552, 963
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	2 cut(s)	348, 456
Hsp92II	CATG	1 cut(s)	541
HspAI	GCGC	3 cut(s)	159, 209, 722
Lsp1109I	GCAGC	3 cut(s)	505, 520, 583
LweI	GCATC	2 cut(s)	14, 733
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	511
MbiI	CCGCTC	1 cut(s)	316
MboII	GAAGA	7 cut(s)	118, 266, 334, 337, 421, 892, 916
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	384, 431
MluCI	AATT	3 cut(s)	165, 617, 926
MmeI	TCCRAC	2 cut(s)	246, 868
MseI	TTAA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	3 cut(s)	306, 459, 818
MspR9I	CCNGG	6 cut(s)	55, 248, 307, 460, 818, 819
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	55, 248
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	9 cut(s)	11, 167, 200, 203, 542, 728, 737, 839, 959
NciI	CCSGG	4 cut(s)	307, 460, 818, 819
NcoI	CCATGG	1 cut(s)	537
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	2 cut(s)	429, 822
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	511
NsbI	TGCGCA	1 cut(s)	723
NspV	TTCGAA	2 cut(s)	621, 827
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	484, 685, 745
PsiI	TTATAA	1 cut(s)	758
Psp6I	CCWGG	2 cut(s)	53, 246
PspGI	CCWGG	2 cut(s)	53, 246
PspN4I	GGNNCC	2 cut(s)	429, 822
PspOMI	GGGCCC	1 cut(s)	427
PspPI	GGNCC	5 cut(s)	57, 427, 428, 602, 821
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	609, 656
RsaNI	GTAC	2 cut(s)	608, 655
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	581
Sau96I	GGNCC	5 cut(s)	57, 427, 428, 602, 821
ScaI	AGTACT	1 cut(s)	609
ScrFI	CCNGG	6 cut(s)	55, 248, 307, 460, 818, 819
SduI	GDGCHC	2 cut(s)	384, 431
SetI	ASST	8 cut(s)	88, 261, 282, 351, 535, 576, 644, 888
SfaNI	GCATC	2 cut(s)	14, 733
SfuI	TTCGAA	2 cut(s)	621, 827
SinI	GGWCC	1 cut(s)	602
SmaI	CCCGGG	1 cut(s)	819
Sse9I	AATT	3 cut(s)	165, 617, 926
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	6 cut(s)	53, 246, 305, 458, 816, 817
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	112, 394, 664
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	6 cut(s)	153, 312, 621, 827, 938, 948
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	165, 617, 926
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	8 cut(s)	173, 183, 197, 206, 209, 243, 267, 270
TfiI	GAWTC	3 cut(s)	484, 685, 745
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	3 cut(s)	518, 533, 571
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	2 cut(s)	422, 677
TspGWI	ACGGA	3 cut(s)	348, 356, 477
TspMI	CCCGGG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	1 cut(s)	617
XbaI	TCTAGA	1 cut(s)	673
XmaI	CCCGGG	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	674
ZraI	GACGTC	1 cut(s)	349
ZrmI	AGTACT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.