Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042908.1

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Reverse (-)

772 .. 1787

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042908.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 907 bp

caaccccaaccctatattctctcccaagcccactaaacccgcaacaagacccgccaccctcaagcccctcctcgccctcccgccctccgtcgccgccgacgtcgacagcgccaccatcgccgctatcggcggcggctccgtggccgcactcgccgccgccctctccctcgcggaccccgagcgccggcggaagctccaggccgaggaggtcggcggcggcgacaaggaggtcgtcaaggactacttcaacaagtcggggttcgagcgctggaagaagatttacggcgagacggatgacgtcaacacagttcagagggatatcaggctcggccattcgaagaccgtggagaatgtgatgaagatgttgacggatgaaggtccgcttggtggcgtcaccgtctgtgacgccggctgcggcaccggctgcctcgctatcccgctcgctaatgaaggcgccctcgtcaccgccaccgacatttccgccgccatggtcgccgaggcagagaagcaggcaagagggcagcttgatttgggcaaagagggagtcgtattgccgaaattcgaagtgggtgatttagagagcttggaagggaagtatgacacggtggtgtgtctggatgtgttgattcattacccacagagcaaggcggatgggatgattgcccaccttgcatcactggccgagaatcggttgcttctgagctttgcacccaagacattgtattacgatatcctgaagaggataggagagttcttccccgggccttccaaggccacgagggcgtatctgcactctgaggccgatgtggagagggctttgaagaaggttgggtggaggataaggaagagaggactaacaacaacacagttctatttttcgaggctcgttgaggctgttcctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

301

Amino Acids

32.36

Weight (kDa)

7.08

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	228
AatII	GACGTC	2 cut(s)	103, 301
AccB1I	GGYRCC	2 cut(s)	417, 453
AccBSI	CCGCTC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	1 cut(s)	171
AcoI	YGGCCR	3 cut(s)	142, 329, 679
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
AfeI	AGCGCT	1 cut(s)	267
AfiI	CCNNNNNNNGG	4 cut(s)	184, 203, 387, 688
AgsI	TTSAA	2 cut(s)	248, 821
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	3 cut(s)	32, 367, 399
AleI	CACNNNNGTG	1 cut(s)	606
AluBI	AGCT	4 cut(s)	194, 524, 583, 703
AluI	AGCT	4 cut(s)	194, 524, 583, 703
Alw26I	GTCTC	1 cut(s)	282
Ama87I	CYCGRG	2 cut(s)	177, 759
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	7 cut(s)	142, 199, 329, 679, 762, 772, 799
ApeKI	GCWGC	3 cut(s)	412, 424, 521
ApoI	RAATTY	1 cut(s)	558
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AspLEI	GCGC	4 cut(s)	111, 184, 268, 456
AspS9I	GGNCC	3 cut(s)	173, 378, 762
AsuC2I	CCSGG	2 cut(s)	760, 761
AsuHPI	GGTGA	3 cut(s)	386, 455, 582
AsuII	TTCGAA	2 cut(s)	336, 562
AvaI	CYCGRG	2 cut(s)	177, 759
AvaII	GGWCC	2 cut(s)	173, 378
BanI	GGYRCC	2 cut(s)	417, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	399, 411, 533
BccI	CCATC	2 cut(s)	123, 645
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	760, 761
BcoDI	GTCTC	1 cut(s)	282
BfoI	RGCGCY	4 cut(s)	112, 185, 269, 457
BglI	GCCNNNNNGGC	1 cut(s)	780
Bme1390I	CCNGG	3 cut(s)	198, 760, 761
Bme18I	GGWCC	2 cut(s)	173, 378
BmeT110I	CYCGRG	2 cut(s)	177, 759
BmgT120I	GGNCC	3 cut(s)	173, 378, 762
BmiI	GGNNCC	4 cut(s)	137, 175, 419, 455
BmrFI	CCNGG	3 cut(s)	198, 760, 761
BmsI	GCATC	1 cut(s)	681
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	180
Bpu14I	TTCGAA	2 cut(s)	336, 562
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	760, 761
BsaHI	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
BsaJI	CCNNGG	8 cut(s)	139, 202, 343, 487, 496, 758, 759, 769
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 203, 387, 688
Bse118I	RCCGGY	3 cut(s)	184, 408, 420
Bse1I	ACTGG	1 cut(s)	682
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	8 cut(s)	139, 202, 343, 487, 496, 758, 759, 769
BseGI	GGATG	5 cut(s)	299, 377, 623, 656, 661
BseLI	CCNNNNNNNGG	4 cut(s)	184, 203, 387, 688
BseMII	CTCAG	2 cut(s)	690, 787
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	60, 219
BseXI	GCAGC	3 cut(s)	399, 411, 533
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	7 cut(s)	144, 201, 331, 681, 764, 774, 801
BshNI	GGYRCC	2 cut(s)	417, 453
BsiHKCI	CYCGRG	2 cut(s)	177, 759
BsiSI	CCGG	4 cut(s)	185, 409, 421, 760
BslI	CCNNNNNNNGG	4 cut(s)	184, 203, 387, 688
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	7 cut(s)	144, 201, 331, 681, 764, 774, 801
BsoBI	CYCGRG	2 cut(s)	177, 759
Bsp119I	TTCGAA	2 cut(s)	336, 562
Bsp19I	CCATGG	1 cut(s)	487
BspANI	GGCC	7 cut(s)	144, 201, 331, 681, 764, 774, 801
BspCNI	CTCAG	2 cut(s)	691, 788
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	137, 175, 419, 455
BspT104I	TTCGAA	2 cut(s)	336, 562
BspT107I	GGYRCC	2 cut(s)	417, 453
BsrBI	CCGCTC	1 cut(s)	440
BsrFI	RCCGGY	3 cut(s)	184, 408, 420
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	3 cut(s)	184, 408, 420
BssECI	CCNNGG	8 cut(s)	139, 202, 343, 487, 496, 758, 759, 769
BssNI	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	2 cut(s)	487, 769
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	5 cut(s)	308, 344, 398, 605, 868
Bst6I	CTCTTC	2 cut(s)	732, 840
BstACI	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstBI	TTCGAA	2 cut(s)	336, 562
BstC8I	GCNNGC	4 cut(s)	186, 410, 442, 511
BstDEI	CTNAG	2 cut(s)	699, 796
BstDSI	CCRYGG	3 cut(s)	139, 343, 487
BstF5I	GGATG	5 cut(s)	299, 377, 623, 656, 661
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	4 cut(s)	112, 185, 269, 457
BstHHI	GCGC	4 cut(s)	111, 184, 268, 456
BstMAI	GTCTC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	9 cut(s)	117, 150, 153, 421, 424, 492, 669, 678, 780
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	3 cut(s)	196, 758, 759
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	399, 411, 533
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	7 cut(s)	144, 201, 331, 681, 764, 774, 801
BtgI	CCRYGG	3 cut(s)	139, 343, 487
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	5 cut(s)	299, 377, 623, 656, 661
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	4 cut(s)	186, 410, 442, 511
CfoI	GCGC	4 cut(s)	111, 184, 268, 456
Cfr10I	RCCGGY	3 cut(s)	184, 408, 420
Cfr13I	GGNCC	3 cut(s)	173, 378, 762
Cfr9I	CCCGGG	1 cut(s)	759
CseI	GACGC	2 cut(s)	380, 414
CviAII	CATG	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	699, 796
DinI	GGCGCC	1 cut(s)	455
DrdI	GACNNNNNNGTC	1 cut(s)	228
DseDI	GACNNNNNNGTC	1 cut(s)	228
EaeI	YGGCCR	3 cut(s)	142, 329, 679
Eam1104I	CTCTTC	2 cut(s)	732, 840
EarI	CTCTTC	2 cut(s)	732, 840
EciI	GGCGGA	3 cut(s)	203, 470, 663
Eco130I	CCWWGG	2 cut(s)	487, 769
Eco32I	GATATC	2 cut(s)	320, 731
Eco47I	GGWCC	2 cut(s)	173, 378
Eco47III	AGCGCT	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	2 cut(s)	177, 759
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	2 cut(s)	320, 731
EcoT14I	CCWWGG	2 cut(s)	487, 769
EgeI	GGCGCC	1 cut(s)	455
EheI	GGCGCC	1 cut(s)	455
ErhI	CCWWGG	2 cut(s)	487, 769
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	1 cut(s)	491
FaiI	YATR	3 cut(s)	15, 489, 598
FalI	AAGNNNNNCTT	4 cut(s)	228, 260, 367, 399
FatI	CATG	1 cut(s)	487
FauI	CCCGC	4 cut(s)	47, 59, 88, 445
FblI	GTMKAC	1 cut(s)	103
FokI	GGATG	5 cut(s)	306, 384, 630, 663, 668
GlaI	GCGC	4 cut(s)	110, 183, 267, 455
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	4 cut(s)	112, 185, 269, 457
HaeIII	GGCC	7 cut(s)	144, 201, 331, 681, 764, 774, 801
HapII	CCGG	4 cut(s)	185, 409, 421, 760
HgaI	GACGC	2 cut(s)	380, 414
HhaI	GCGC	4 cut(s)	111, 184, 268, 456
Hin1I	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	4 cut(s)	109, 182, 266, 454
HinP1I	GCGC	4 cut(s)	109, 182, 266, 454
HincII	GTYRAC	3 cut(s)	104, 302, 367
HindII	GTYRAC	3 cut(s)	104, 302, 367
HinfI	GANTC	3 cut(s)	544, 626, 686
HpaII	CCGG	4 cut(s)	185, 409, 421, 760
HphI	GGTGA	3 cut(s)	386, 455, 582
Hpy166II	GTNNAC	3 cut(s)	104, 302, 367
Hpy188I	TCNGA	3 cut(s)	313, 700, 797
Hpy188III	TCNNGA	2 cut(s)	615, 734
Hpy8I	GTNNAC	3 cut(s)	104, 302, 367
Hpy99I	CGWCG	3 cut(s)	93, 102, 105
HpyAV	CCTTC	5 cut(s)	369, 444, 582, 775, 818
HpyCH4III	ACNGT	5 cut(s)	308, 344, 398, 605, 868
HpyCH4IV	ACGT	2 cut(s)	100, 298
HpyCH4V	TGCA	3 cut(s)	672, 708, 791
HpyF10VI	GCNNNNNNNGC	9 cut(s)	117, 150, 153, 421, 424, 492, 669, 678, 780
HpyF3I	CTNAG	2 cut(s)	699, 796
HpySE526I	ACGT	2 cut(s)	100, 298
Hsp92I	GRCGYC	5 cut(s)	100, 298, 391, 406, 454
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	4 cut(s)	109, 182, 266, 454
KasI	GGCGCC	1 cut(s)	453
KroI	GCCGGC	2 cut(s)	184, 408
KroNI	GCCGGC	2 cut(s)	186, 410
LmnI	GCTCC	2 cut(s)	141, 199
Lsp1109I	GCAGC	3 cut(s)	399, 411, 533
LweI	GCATC	1 cut(s)	681
MaeII	ACGT	2 cut(s)	100, 298
MaeIII	GTNAC	3 cut(s)	392, 402, 461
MbiI	CCGCTC	1 cut(s)	440
MboII	GAAGA	8 cut(s)	284, 287, 350, 371, 746, 749, 833, 857
MluCI	AATT	1 cut(s)	558
Mly113I	GGCGCC	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	553
MreI	CGCCGGCG	1 cut(s)	184
MroNI	GCCGGC	2 cut(s)	184, 408
MseI	TTAA	1 cut(s)	905
MslI	CAYNNNNRTG	1 cut(s)	606
MspI	CCGG	4 cut(s)	185, 409, 421, 760
MspR9I	CCNGG	3 cut(s)	198, 760, 761
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	9 cut(s)	117, 150, 153, 421, 424, 492, 669, 678, 780
NaeI	GCCGGC	2 cut(s)	186, 410
NarI	GGCGCC	1 cut(s)	454
NciI	CCSGG	2 cut(s)	760, 761
NcoI	CCATGG	1 cut(s)	487
NgoMIV	GCCGGC	2 cut(s)	184, 408
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	4 cut(s)	137, 175, 419, 455
NmeAIII	GCCGAG	4 cut(s)	227, 307, 521, 707
NmuCI	GTSAC	3 cut(s)	392, 402, 461
NspV	TTCGAA	2 cut(s)	336, 562
OliI	CACNNNNGTG	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	3 cut(s)	97, 175, 217
PdiI	GCCGGC	2 cut(s)	186, 410
PfeI	GAWTC	2 cut(s)	626, 686
PleI	GAGTC	1 cut(s)	552
PluTI	GGCGCC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	137, 175, 419, 455
PspPI	GGNCC	3 cut(s)	173, 378, 762
RseI	CAYNNNNRTG	1 cut(s)	606
SalI	GTCGAC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	905
Sau96I	GGNCC	3 cut(s)	173, 378, 762
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	3 cut(s)	198, 760, 761
SfaNI	GCATC	1 cut(s)	681
SfoI	GGCGCC	1 cut(s)	455
SfuI	TTCGAA	2 cut(s)	336, 562
SgrAI	CRCCGGYG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	173, 378
SmaI	CCCGGG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	558
SspDI	GGCGCC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	196, 758, 759
StyI	CCWWGG	2 cut(s)	487, 769
TaaI	ACNGT	5 cut(s)	308, 344, 398, 605, 868
TaiI	ACGT	2 cut(s)	103, 301
TaqI	TCGA	5 cut(s)	103, 262, 336, 562, 879
TasI	AATT	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	626, 686
Tru1I	TTAA	1 cut(s)	905
Tru9I	TTAA	1 cut(s)	905
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	3 cut(s)	392, 402, 461
TseI	GCWGC	3 cut(s)	412, 424, 521
Tsp45I	GTSAC	3 cut(s)	392, 402, 461
TspDTI	ATGAA	4 cut(s)	372, 388, 463, 618
TspGWI	ACGGA	4 cut(s)	77, 128, 306, 384
TspMI	CCCGGG	1 cut(s)	759
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	173, 378
XapI	RAATTY	1 cut(s)	558
XmaI	CCCGGG	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	103
ZraI	GACGTC	2 cut(s)	101, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.