Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Reverse (-)

13205361 .. 13206965

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATCTTCAGCCTCACTATCTTCCCCACTCCACTTCCACAACCCACACCCCAGATTCTCCCCAAAACCCTCTACCACCCTAAGACCCACCACCACCGCCACCAAGCCCCTCTTCGCCATCCCGCCGCCCCTCACAGCCGTCGCCGACGTCGACAGCGCCACCATCGCCGCTATCGGCGGCGGCTCGGTAGCCGCACTCGCCGCCGCGCTCTCCTTAGCCGACCCAGAGAGGCGCCGTCGCCTCCAAGCCGAGGAGGTCGGCGGCGGCGATAAGGAGGTGGTGAAGGACTACTTCAACAAGTCCGGGTTCGAGCGGTGGAAGAAGATATATGGCGAGACGGATGACGTCAACAGGGTTCAGAGAGATATCAGGCTTGGGCACTCCAAGACCGTTGAAAATGTGATGAAGATGCTGACCGATGAAGGAAAGCTTGAAGGGGTTACTGTGTGTGACGCTGGGTGCGGGACGGGCTGTTTGGCGATTCCGCTGGCGAAGGAAGGTGCCGTTGTCACTGCTGCTGATATTTCAGCTGCCATGGTTGCTGAGGCTGAGAAGCAGGCAAGAGAGCAGCTTCAGTTGAGCAATCGTGGGTTCTCAGGAGGGCCAGTAATGCCTAAATTTGAAGTGAAGGATTTAGAGAGCTTGGATGGGAAGTATGACACAGTGGTCTGTCTAGATGTTTTGATTCATTACCCACAGAGCAAGGCTGATGCGATGATTGCCCATCTTGCTTCATTGGCTGAAAATAGATTACTTATCAGTTTTGCACCAAAGACATTGTATTATGATTTGCTAAAGAGGATAGGAGAGTTGTTCCCGGGGCCTTCGAAGGCAACGAGGGCATATCTACACGCGGAGGCAGATGTTGAGAGGGCTTTAAAGAAGGTTGGGTGGAGGATAAGGAAGAGAGGACTGACCACTACACAATTTTATTTTTCGAGGCTGGTTGAGGCTGTTCCTGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

324

Amino Acids

34.99

Weight (kDa)

8.89

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
AatII	GACGTC	2 cut(s)	153, 351
AccB1I	GGYRCC	2 cut(s)	234, 503
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	209, 857
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	560
AcyI	GRCGYC	3 cut(s)	150, 235, 348
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	298, 398, 437, 626
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	433, 533, 574, 645
AluI	AGCT	4 cut(s)	433, 533, 574, 645
Alw26I	GTCTC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	820
AoxI	GGCC	2 cut(s)	605, 824
ApeKI	GCWGC	3 cut(s)	518, 533, 571
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AspLEI	GCGC	3 cut(s)	161, 211, 237
AspS9I	GGNCC	2 cut(s)	605, 824
AsuC2I	CCSGG	3 cut(s)	307, 821, 822
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	830
AvaI	CYCGRG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	234, 503
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	505, 520, 583
BccI	CCATC	4 cut(s)	128, 173, 644, 735
BceAI	ACGGC	3 cut(s)	125, 222, 491
BcnI	CCSGG	3 cut(s)	307, 821, 822
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	677
BfoI	RGCGCY	2 cut(s)	162, 238
Bme1390I	CCNGG	3 cut(s)	307, 821, 822
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	2 cut(s)	605, 824
BmiI	GGNNCC	3 cut(s)	236, 505, 825
BmrFI	CCNGG	3 cut(s)	307, 821, 822
BmsI	GCATC	3 cut(s)	14, 402, 703
Bpu10I	CCTNAGC	2 cut(s)	217, 546
Bpu14I	TTCGAA	1 cut(s)	830
BpuMI	CCSGG	3 cut(s)	307, 821, 822
BsaHI	GRCGYC	3 cut(s)	150, 235, 348
BsaJI	CCNNGG	4 cut(s)	252, 537, 820, 821
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	608
BseDI	CCNNGG	4 cut(s)	252, 537, 820, 821
BseGI	GGATG	3 cut(s)	120, 349, 655
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	537, 543, 612
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	505, 520, 583
BseYI	CCCAGC	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	209, 857
BshFI	GGCC	2 cut(s)	607, 826
BshNI	GGYRCC	2 cut(s)	234, 503
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	2 cut(s)	306, 821
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	607, 826
BsoBI	CYCGRG	1 cut(s)	820
Bsp119I	TTCGAA	1 cut(s)	830
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	537
BspANI	GGCC	2 cut(s)	607, 826
BspCNI	CTCAG	3 cut(s)	538, 544, 611
BspFNI	CGCG	2 cut(s)	209, 857
BspLI	GGNNCC	3 cut(s)	236, 505, 825
BspT104I	TTCGAA	1 cut(s)	830
BspT107I	GGYRCC	2 cut(s)	234, 503
BsrBI	CCGCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	252, 537, 820, 821
BssNI	GRCGYC	3 cut(s)	150, 235, 348
BssT1I	CCWWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	394, 448, 667
Bst6I	CTCTTC	2 cut(s)	119, 902
BstACI	GRCGYC	3 cut(s)	150, 235, 348
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	492, 561
BstDEI	CTNAG	5 cut(s)	83, 217, 546, 552, 598
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	3 cut(s)	120, 349, 655
BstFNI	CGCG	2 cut(s)	209, 857
BstH2I	RGCGCY	2 cut(s)	162, 238
BstHHI	GCGC	3 cut(s)	161, 211, 237
BstMAI	GTCTC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	305, 819, 820
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	2 cut(s)	209, 857
BstV1I	GCAGC	3 cut(s)	505, 520, 583
BsuRI	GGCC	2 cut(s)	607, 826
BtgI	CCRYGG	1 cut(s)	537
BtgZI	GCGATG	2 cut(s)	151, 731
BtsCI	GGATG	3 cut(s)	120, 349, 655
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 672
Cac8I	GCNNGC	2 cut(s)	492, 561
CfoI	GCGC	3 cut(s)	161, 211, 237
Cfr13I	GGNCC	2 cut(s)	605, 824
Cfr9I	CCCGGG	1 cut(s)	820
CseI	GACGC	1 cut(s)	464
CviAII	CATG	1 cut(s)	538
DdeI	CTNAG	5 cut(s)	83, 217, 546, 552, 598
DinI	GGCGCC	1 cut(s)	236
DraI	TTTAAA	1 cut(s)	882
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
Eam1104I	CTCTTC	2 cut(s)	119, 902
EarI	CTCTTC	2 cut(s)	119, 902
Eco130I	CCWWGG	1 cut(s)	537
Eco32I	GATATC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	824
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	537
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	541
FaiI	YATR	6 cut(s)	331, 333, 539, 660, 789, 847
FalI	AAGNNNNNCTT	6 cut(s)	98, 130, 278, 310, 417, 449
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	537
FauI	CCCGC	2 cut(s)	132, 458
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	3 cut(s)	107, 356, 662
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	3 cut(s)	160, 210, 236
GsaI	CCCAGC	1 cut(s)	462
HaeII	RGCGCY	2 cut(s)	162, 238
HaeIII	GGCC	2 cut(s)	607, 826
HapII	CCGG	2 cut(s)	306, 821
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	3 cut(s)	161, 211, 237
Hin1I	GRCGYC	3 cut(s)	150, 235, 348
Hin1II	CATG	1 cut(s)	541
Hin6I	GCGC	3 cut(s)	159, 209, 235
HinP1I	GCGC	3 cut(s)	159, 209, 235
HincII	GTYRAC	2 cut(s)	154, 352
HindII	GTYRAC	2 cut(s)	154, 352
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	57, 484, 688
HpaII	CCGG	2 cut(s)	306, 821
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	154, 352
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	600, 677
Hpy8I	GTNNAC	2 cut(s)	154, 352
Hpy99I	CGWCG	4 cut(s)	146, 152, 155, 243
HpyAV	CCTTC	9 cut(s)	280, 419, 431, 490, 494, 625, 826, 837, 880
HpyCH4III	ACNGT	3 cut(s)	394, 448, 667
HpyCH4IV	ACGT	2 cut(s)	150, 348
HpyCH4V	TGCA	1 cut(s)	770
HpyF3I	CTNAG	5 cut(s)	83, 217, 546, 552, 598
HpySE526I	ACGT	2 cut(s)	150, 348
Hsp92I	GRCGYC	3 cut(s)	150, 235, 348
Hsp92II	CATG	1 cut(s)	541
HspAI	GCGC	3 cut(s)	159, 209, 235
KasI	GGCGCC	1 cut(s)	234
Lsp1109I	GCAGC	3 cut(s)	505, 520, 583
LweI	GCATC	3 cut(s)	14, 402, 703
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	2 cut(s)	150, 348
MaeIII	GTNAC	3 cut(s)	442, 452, 511
MbiI	CCGCTC	1 cut(s)	316
MboII	GAAGA	6 cut(s)	15, 106, 334, 337, 421, 919
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	2 cut(s)	620, 929
Mly113I	GGCGCC	1 cut(s)	235
MseI	TTAA	1 cut(s)	881
MspA1I	CMGCKG	2 cut(s)	490, 533
MspI	CCGG	2 cut(s)	306, 821
MspR9I	CCNGG	3 cut(s)	307, 821, 822
MvnI	CGCG	2 cut(s)	209, 857
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	3 cut(s)	307, 821, 822
NcoI	CCATGG	1 cut(s)	537
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	3 cut(s)	236, 505, 825
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	452, 511
NspV	TTCGAA	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 267, 836
PfeI	GAWTC	3 cut(s)	57, 484, 688
PluTI	GGCGCC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	236, 505, 825
PspPI	GGNCC	2 cut(s)	605, 824
PvuII	CAGCTG	1 cut(s)	533
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	881
Sau96I	GGNCC	2 cut(s)	605, 824
ScrFI	CCNGG	3 cut(s)	307, 821, 822
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	14, 402, 703
SfoI	GGCGCC	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	830
SmaI	CCCGGG	1 cut(s)	822
Sse9I	AATT	2 cut(s)	620, 929
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	677
StyD4I	CCNGG	3 cut(s)	305, 819, 820
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	394, 448, 667
TaiI	ACGT	2 cut(s)	153, 351
TaqI	TCGA	4 cut(s)	153, 312, 830, 941
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	2 cut(s)	620, 929
TauI	GCSGC	9 cut(s)	130, 173, 183, 186, 197, 206, 209, 267, 270
TfiI	GAWTC	3 cut(s)	57, 484, 688
Tru1I	TTAA	1 cut(s)	881
Tru9I	TTAA	1 cut(s)	881
TscAI	CASTG	2 cut(s)	520, 672
TseFI	GTSAC	2 cut(s)	452, 511
TseI	GCWGC	3 cut(s)	518, 533, 571
Tsp45I	GTSAC	2 cut(s)	452, 511
TspDTI	ATGAA	4 cut(s)	422, 438, 680, 726
TspGWI	ACGGA	1 cut(s)	356
TspMI	CCCGGG	1 cut(s)	820
TspRI	CASTG	2 cut(s)	520, 672
XapI	RAATTY	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	676
XmaI	CCCGGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	677
ZraI	GACGTC	2 cut(s)	151, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.