Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Reverse (-)

7386319 .. 7387366

Gene Structure 1048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG099800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCATTCTCCGCCTCTCTCTCTTCCCCACTCCACTTCCGCAACCCCAACCCTATATTCTCTCCCAAGCCCACTAAACCCGCCACCCTCAAGCCCCTCCTCGCCCTCCCGCCCTCCGTCGCCGCCGACGTCGACAGCGCCACCATCGCCGCTATCGGCGGCGGCTCCGTGGCCGCACTCGCCGCCGCTCTCTCCCTCGCCGACCCCGAGCGCCGGCGGAAGCTCCAGGCCGAGGAGGTCGGCGGCGGCGACAAGGAGGTCGTCAAGGACTACTTCAACAAGTCGGGGTTCGAGCGGTGGAAGAAGATTTACGGCGAGACGGATGACGTCAACACAGTTCAGAGGGATATCAGGCTCGGCCATTCGAAGACCGTCGAGAATGTGATGAAGATGTTGACGGATGAAGGTCCGCTTGGTGGCGTCACCGTCTGTGACGCCGGCTGCGGCACCGGCTGCCTCGCTATCCCGCTCGCTAATGAAGGCGCCGTCGTCACCGCCACCGACATTTCCGCCGCCATGGTCGCCGAGGCAGAGAAGCAGGCAAGAGAGCAGCTTGATTTGGGGAAAGAGGGAGTCGTATTGCCGAAATTCGAAGTGAGTGATTTAGAGTGCTTGGAAGGGAAGTATGACACGGTGGTGTGTCTGGATGTGTTGATTCATTACCCACAGAGCAAGGCGGATGGGATGATTGCCCACCTTGCATCACTGGCCGAGAATCGGTTGCTTCTGAGCTTTGCACCGAAGACATTGTATTACGATATCCTGAAGAGGATAGGAGAGTTCTTCCCCGGGCCTTCAAAGGCGACGAGGGCGTATCTGCACTCTGAGGCGGATGTGGAGAGGGCTTTGAAGAAGGTTGGGTGGAGGATAAGGAAGAGAGGACTAACAACAACACAGTTCTATTTTTCGAGGCTCGTTGAGGCTGTTCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

311

Amino Acids

33.57

Weight (kDa)

6.55

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	140 - 223	3.8e-09	Methyltransferase domain
Methyltransf_23	PF13489	142 - 291	3.7e-11	Methyltransferase domain
Methyltransf_25	PF13649	143 - 235	5.6e-13	Methyltransferase domain
Methyltransf_12	PF08242	145 - 236	1.6e-11	Methyltransferase domain
Methyltransf_11	PF08241	145 - 222	6.5e-10	Methyltransferase domain
Mg-por_mtran_C	PF07109	214 - 309	8.3e-37	Magnesium-protoporphyrin IX methyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	2 cut(s)	132, 330
AccB1I	GGYRCC	2 cut(s)	446, 482
AccBSI	CCGCTC	3 cut(s)	188, 295, 469
AccI	GTMKAC	1 cut(s)	132
AcoI	YGGCCR	3 cut(s)	171, 358, 708
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	1 cut(s)	785
AcyI	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
AfiI	CCNNNNNNNGG	4 cut(s)	213, 232, 416, 717
AgsI	TTSAA	3 cut(s)	277, 798, 850
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 396, 428
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	3 cut(s)	223, 553, 732
AluI	AGCT	3 cut(s)	223, 553, 732
Alw26I	GTCTC	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	206, 788
AoxI	GGCC	5 cut(s)	171, 228, 358, 708, 791
ApeKI	GCWGC	3 cut(s)	441, 453, 550
ApoI	RAATTY	1 cut(s)	587
AspLEI	GCGC	3 cut(s)	140, 213, 485
AspS9I	GGNCC	2 cut(s)	407, 791
AsuC2I	CCSGG	2 cut(s)	789, 790
AsuHPI	GGTGA	2 cut(s)	415, 484
AsuII	TTCGAA	2 cut(s)	365, 591
AvaI	CYCGRG	2 cut(s)	206, 788
AvaII	GGWCC	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	446, 482
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbsI	GAAGAC	2 cut(s)	374, 749
BbvI	GCAGC	3 cut(s)	428, 440, 562
BccI	CCATC	2 cut(s)	152, 674
BceAI	ACGGC	2 cut(s)	328, 470
BciT130I	CCWGG	1 cut(s)	227
BcnI	CCSGG	2 cut(s)	789, 790
BcoDI	GTCTC	1 cut(s)	311
BfoI	RGCGCY	3 cut(s)	141, 214, 486
Bme1390I	CCNGG	3 cut(s)	227, 789, 790
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	2 cut(s)	206, 788
BmgT120I	GGNCC	2 cut(s)	407, 791
BmiI	GGNNCC	3 cut(s)	166, 448, 484
BmrFI	CCNGG	3 cut(s)	227, 789, 790
BmsI	GCATC	1 cut(s)	710
BpiI	GAAGAC	2 cut(s)	374, 749
BpmI	CTGGAG	1 cut(s)	209
Bpu14I	TTCGAA	2 cut(s)	365, 591
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	789, 790
BsaHI	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
BsaJI	CCNNGG	6 cut(s)	168, 231, 516, 525, 787, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	213, 232, 416, 717
Bse118I	RCCGGY	3 cut(s)	213, 437, 449
Bse1I	ACTGG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	6 cut(s)	168, 231, 516, 525, 787, 788
BseGI	GGATG	6 cut(s)	328, 406, 652, 685, 690, 838
BseLI	CCNNNNNNNGG	4 cut(s)	213, 232, 416, 717
BseMII	CTCAG	2 cut(s)	719, 816
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	2 cut(s)	89, 248
BseXI	GCAGC	3 cut(s)	428, 440, 562
BsgI	GTGCAG	1 cut(s)	803
BshFI	GGCC	5 cut(s)	173, 230, 360, 710, 793
BshNI	GGYRCC	2 cut(s)	446, 482
BsiHKCI	CYCGRG	2 cut(s)	206, 788
BsiSI	CCGG	4 cut(s)	214, 438, 450, 789
BslI	CCNNNNNNNGG	4 cut(s)	213, 232, 416, 717
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	5 cut(s)	173, 230, 360, 710, 793
BsoBI	CYCGRG	2 cut(s)	206, 788
Bsp119I	TTCGAA	2 cut(s)	365, 591
Bsp19I	CCATGG	1 cut(s)	516
BspANI	GGCC	5 cut(s)	173, 230, 360, 710, 793
BspCNI	CTCAG	2 cut(s)	720, 817
BspLI	GGNNCC	3 cut(s)	166, 448, 484
BspT104I	TTCGAA	2 cut(s)	365, 591
BspT107I	GGYRCC	2 cut(s)	446, 482
BsrBI	CCGCTC	3 cut(s)	188, 295, 469
BsrFI	RCCGGY	3 cut(s)	213, 437, 449
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	3 cut(s)	213, 437, 449
BssECI	CCNNGG	6 cut(s)	168, 231, 516, 525, 787, 788
BssNI	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	5 cut(s)	337, 373, 427, 634, 897
Bst6I	CTCTTC	3 cut(s)	28, 761, 869
BstACI	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstBI	TTCGAA	2 cut(s)	365, 591
BstC8I	GCNNGC	4 cut(s)	215, 439, 471, 540
BstDEI	CTNAG	2 cut(s)	728, 825
BstDSI	CCRYGG	2 cut(s)	168, 516
BstF5I	GGATG	6 cut(s)	328, 406, 652, 685, 690, 838
BstH2I	RGCGCY	3 cut(s)	141, 214, 486
BstHHI	GCGC	3 cut(s)	140, 213, 485
BstMAI	GTCTC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	3 cut(s)	225, 787, 788
BstV1I	GCAGC	3 cut(s)	428, 440, 562
BstV2I	GAAGAC	2 cut(s)	374, 749
BsuRI	GGCC	5 cut(s)	173, 230, 360, 710, 793
BtgI	CCRYGG	2 cut(s)	168, 516
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	6 cut(s)	328, 406, 652, 685, 690, 838
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	4 cut(s)	215, 439, 471, 540
CfoI	GCGC	3 cut(s)	140, 213, 485
Cfr10I	RCCGGY	3 cut(s)	213, 437, 449
Cfr13I	GGNCC	2 cut(s)	407, 791
Cfr9I	CCCGGG	1 cut(s)	788
CseI	GACGC	2 cut(s)	409, 443
CviAII	CATG	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	728, 825
DinI	GGCGCC	1 cut(s)	484
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	3 cut(s)	171, 358, 708
Eam1104I	CTCTTC	3 cut(s)	28, 761, 869
EarI	CTCTTC	3 cut(s)	28, 761, 869
EciI	GGCGGA	4 cut(s)	232, 499, 692, 845
Eco130I	CCWWGG	1 cut(s)	516
Eco32I	GATATC	2 cut(s)	349, 760
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	785
Eco88I	CYCGRG	2 cut(s)	206, 788
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	2 cut(s)	349, 760
EcoT14I	CCWWGG	1 cut(s)	516
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	1 cut(s)	520
FaiI	YATR	3 cut(s)	56, 518, 627
FalI	AAGNNNNNCTT	4 cut(s)	257, 289, 396, 428
FatI	CATG	1 cut(s)	516
FauI	CCCGC	3 cut(s)	88, 117, 474
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	6 cut(s)	335, 413, 659, 692, 697, 845
GlaI	GCGC	3 cut(s)	139, 212, 484
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	3 cut(s)	141, 214, 486
HaeIII	GGCC	5 cut(s)	173, 230, 360, 710, 793
HapII	CCGG	4 cut(s)	214, 438, 450, 789
HgaI	GACGC	2 cut(s)	409, 443
HhaI	GCGC	3 cut(s)	140, 213, 485
Hin1I	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
Hin1II	CATG	1 cut(s)	520
Hin6I	GCGC	3 cut(s)	138, 211, 483
HinP1I	GCGC	3 cut(s)	138, 211, 483
HincII	GTYRAC	3 cut(s)	133, 331, 396
HindII	GTYRAC	3 cut(s)	133, 331, 396
HinfI	GANTC	3 cut(s)	573, 655, 715
HpaII	CCGG	4 cut(s)	214, 438, 450, 789
HphI	GGTGA	2 cut(s)	415, 484
Hpy166II	GTNNAC	3 cut(s)	133, 331, 396
Hpy188I	TCNGA	3 cut(s)	342, 729, 826
Hpy188III	TCNNGA	3 cut(s)	376, 644, 763
Hpy8I	GTNNAC	3 cut(s)	133, 331, 396
Hpy99I	CGWCG	6 cut(s)	122, 131, 134, 377, 491, 808
HpyAV	CCTTC	5 cut(s)	398, 473, 611, 804, 847
HpyCH4III	ACNGT	5 cut(s)	337, 373, 427, 634, 897
HpyCH4IV	ACGT	2 cut(s)	129, 327
HpyCH4V	TGCA	3 cut(s)	701, 737, 820
HpyF3I	CTNAG	2 cut(s)	728, 825
HpySE526I	ACGT	2 cut(s)	129, 327
Hsp92I	GRCGYC	5 cut(s)	129, 327, 420, 435, 483
Hsp92II	CATG	1 cut(s)	520
HspAI	GCGC	3 cut(s)	138, 211, 483
KasI	GGCGCC	1 cut(s)	482
KroI	GCCGGC	2 cut(s)	213, 437
KroNI	GCCGGC	2 cut(s)	215, 439
LmnI	GCTCC	2 cut(s)	170, 228
Lsp1109I	GCAGC	3 cut(s)	428, 440, 562
LweI	GCATC	1 cut(s)	710
MaeII	ACGT	2 cut(s)	129, 327
MaeIII	GTNAC	3 cut(s)	421, 431, 490
MbiI	CCGCTC	3 cut(s)	188, 295, 469
MluCI	AATT	1 cut(s)	587
Mly113I	GGCGCC	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	582
MreI	CGCCGGCG	1 cut(s)	213
MroNI	GCCGGC	2 cut(s)	213, 437
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	4 cut(s)	214, 438, 450, 789
MspR9I	CCNGG	3 cut(s)	227, 789, 790
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	227
NaeI	GCCGGC	2 cut(s)	215, 439
NarI	GGCGCC	1 cut(s)	483
NciI	CCSGG	2 cut(s)	789, 790
NcoI	CCATGG	1 cut(s)	516
NgoMIV	GCCGGC	2 cut(s)	213, 437
NlaIII	CATG	1 cut(s)	520
NlaIV	GGNNCC	3 cut(s)	166, 448, 484
NmeAIII	GCCGAG	4 cut(s)	256, 336, 550, 736
NmuCI	GTSAC	3 cut(s)	421, 431, 490
NspV	TTCGAA	2 cut(s)	365, 591
OliI	CACNNNNGTG	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 204, 246
PctI	GAATGC	1 cut(s)	5
PdiI	GCCGGC	2 cut(s)	215, 439
PfeI	GAWTC	2 cut(s)	655, 715
PleI	GAGTC	1 cut(s)	581
PluTI	GGCGCC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	166, 448, 484
PspPI	GGNCC	2 cut(s)	407, 791
RseI	CAYNNNNRTG	1 cut(s)	635
SalI	GTCGAC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	407, 791
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	3 cut(s)	227, 789, 790
SfaNI	GCATC	1 cut(s)	710
SfoI	GGCGCC	1 cut(s)	484
SfuI	TTCGAA	2 cut(s)	365, 591
SgrAI	CRCCGGYG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	407
SmaI	CCCGGG	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	587
SspDI	GGCGCC	1 cut(s)	482
StyD4I	CCNGG	3 cut(s)	225, 787, 788
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	5 cut(s)	337, 373, 427, 634, 897
TaiI	ACGT	2 cut(s)	132, 330
TaqI	TCGA	6 cut(s)	132, 291, 365, 375, 591, 908
TasI	AATT	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	655, 715
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	3 cut(s)	421, 431, 490
TseI	GCWGC	3 cut(s)	441, 453, 550
Tsp45I	GTSAC	3 cut(s)	421, 431, 490
TspDTI	ATGAA	4 cut(s)	401, 417, 492, 647
TspGWI	ACGGA	4 cut(s)	106, 157, 335, 413
TspMI	CCCGGG	1 cut(s)	788
TspRI	CASTG	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	132
ZraI	GACGTC	2 cut(s)	130, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.