Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009399

Physical Location & Seq

Genomic Coordinates Reverse (-)

27526044 .. 27527718

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1131500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGTCCTCCGCCTCGCTATCTTTGCCACTCCACTTCCCCAACCCCAATCCCAGGCCCATATTCTTCCCAAAGCCCACAAAATCCACCACCCTAAAACCCCCTGCCCGCACCACCACCGTCAAGCCCCTCTTCGCCCTCCCACCCGCCGACGTCGACAGCGCTACTATCGCCGCCATTGGCGGCGGCTCGGTGGCCGCCCTTGCCGCCGCGCTCTCCTTATCCGACCCGGAAAACAGGCGCCGCCTCCAGGCCGAGGAGGTCGGCGGCGGCGACAAGGAGGTCGTGAAGGACTACTTCAACAAGTCCGGGTTCGAGCGGTGGAAGAAGATATACGGAGAGACGGATGACGTCAACAGGGTTCAGAGGGACATCAGGCTCGGCCACTCCAAGACCGTTGAGAATGTGATGAAGATGTTGACCGATGAGGGCCCACTTCAGGGGGTCTCTGTGTGCGACGCCGGGTGTGGGACCGGGTGCTTGGCCATTCCGCTGGCGAAGGAAGGGGCCGTTGTCACGGCTGCTGATATTTCGGCTGCCATGGTTGCAGAGGCTGAGAAGCAGGCAAAAGAGCAGCTTAAGTTAAGCAATGGCTTCTCAGCAGGGCCAGTACTGCCGAAATTCGTAGTGAAGGATTTGGAGAGCTTGGATGGGAAGTACGACACAGTGGTCTGTCTTGATGTTTTGATTCATTACCCGCAGAGCAAGGCTGATGGGATGATTGCCCATCTTGCTTCATTGGCGGAGAATCGCTTGCTTATAAGTTTTGCGCCAAAGACATTGTATTATGATGTGCTAAAGAGGATAGGAGAGTTGTTCCCGGGGCCTTCGAAGGCAACGAGGGCGTATCTACATTCGGAGGCAGATGTGGAGAGAGCCTTGAAGAAGGTTGGGTGGAGGATAAGGAAGAGAGGACTAACCACTACACAATTTTATTTTTCGAGGCTGGTCGAGGCTGTTCCTGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016740 GO:0016741 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032259 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046406 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg-por_mtran_C

Protein Analysis

324

Amino Acids

34.88

Weight (kDa)

9.0

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	146 - 302	2.4e-11	Methyltransferase domain
Methyltransf_31	PF13847	148 - 234	4.6e-08	Methyltransferase domain
Methyltransf_25	PF13649	151 - 246	1.7e-12	Methyltransferase domain
Methyltransf_12	PF08242	153 - 247	5.1e-10	Methyltransferase domain
Methyltransf_11	PF08241	153 - 233	2.9e-10	Methyltransferase domain
Mg-por_mtran_C	PF07109	225 - 320	1.3e-36	Magnesium-protoporphyrin IX methyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080 AT4G25080
fragaria_vesca	FvH4_5g09430 FvH4_5g09430
malus_domestica	MD06G1131500.v1.1 MD14G1147900.v1.1
prunus_persica	Prupe.5G142500_v2.0.a1
pyrus_communis	pycom06g12290
rosa_chinensis	RchiOBHm_Chr7g0188761
rosa_laevigata	RLG00000004663
rosa_multiflora	Rmu_sc0042908.1_g000002
rosa_roxburghii	Rroxscaffold_3G00266060
rosa_rugosa	Rorug06G0493700
rosa_samantha	Rh7AG098100 Rh7BG099800 Rh7CG101500 Rh7DG099900
rosa_wichuraiana	Rw7G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
AasI	GACNNNNNNGTC	2 cut(s)	281, 668
AatII	GACGTC	2 cut(s)	156, 354
AccB1I	GGYRCC	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	212
AcoI	YGGCCR	3 cut(s)	195, 382, 483
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	422
AcyI	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
AfaI	GTAC	2 cut(s)	612, 659
AfeI	AGCGCT	1 cut(s)	163
AfiI	CCNNNNNNNGG	6 cut(s)	54, 250, 256, 439, 440, 468
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	2 cut(s)	301, 883
AjnI	CCWGG	2 cut(s)	53, 249
AluBI	AGCT	2 cut(s)	577, 645
AluI	AGCT	2 cut(s)	577, 645
Alw26I	GTCTC	2 cut(s)	335, 451
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	820
Aor51HI	AGCGCT	1 cut(s)	163
AoxI	GGCC	9 cut(s)	56, 195, 252, 382, 430, 483, 507, 605, 824
ApaI	GGGCCC	1 cut(s)	434
ApeKI	GCWGC	3 cut(s)	521, 536, 574
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	4 cut(s)	164, 214, 243, 772
AspS9I	GGNCC	7 cut(s)	57, 430, 431, 471, 507, 605, 824
AsuC2I	CCSGG	6 cut(s)	230, 310, 463, 475, 821, 822
AsuII	TTCGAA	1 cut(s)	830
AvaI	CYCGRG	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbvI	GCAGC	3 cut(s)	508, 523, 586
BccI	CCATC	3 cut(s)	644, 707, 735
BceAI	ACGGC	2 cut(s)	494, 534
BciT130I	CCWGG	2 cut(s)	55, 251
BcnI	CCSGG	6 cut(s)	230, 310, 463, 475, 821, 822
BcoDI	GTCTC	2 cut(s)	335, 451
BfoI	RGCGCY	2 cut(s)	165, 244
BfrI	CTTAAG	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	8 cut(s)	55, 230, 251, 310, 463, 475, 821, 822
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	7 cut(s)	57, 430, 431, 471, 507, 605, 824
BmiI	GGNNCC	5 cut(s)	242, 432, 472, 508, 825
BmrFI	CCNGG	8 cut(s)	55, 230, 251, 310, 463, 475, 821, 822
BpmI	CTGGAG	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	830
BpuMI	CCSGG	6 cut(s)	230, 310, 463, 475, 821, 822
BsaHI	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	5 cut(s)	53, 255, 540, 820, 821
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 250, 256, 439, 440, 468
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	55, 251
BseDI	CCNNGG	5 cut(s)	53, 255, 540, 820, 821
BseGI	GGATG	3 cut(s)	352, 655, 723
BseLI	CCNNNNNNNGG	6 cut(s)	54, 250, 256, 439, 440, 468
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	546, 612
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	508, 523, 586
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	9 cut(s)	58, 197, 254, 384, 432, 485, 509, 607, 826
BshNI	GGYRCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	5 cut(s)	230, 309, 462, 474, 821
BslFI	GGGAC	2 cut(s)	383, 484
BslI	CCNNNNNNNGG	6 cut(s)	54, 250, 256, 439, 440, 468
BsmAI	GTCTC	2 cut(s)	335, 451
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	383, 484
BsnI	GGCC	9 cut(s)	58, 197, 254, 384, 432, 485, 509, 607, 826
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	820
Bsp119I	TTCGAA	1 cut(s)	830
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp19I	CCATGG	1 cut(s)	540
BspANI	GGCC	9 cut(s)	58, 197, 254, 384, 432, 485, 509, 607, 826
BspCNI	CTCAG	2 cut(s)	547, 611
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	5 cut(s)	242, 432, 472, 508, 825
BspT104I	TTCGAA	1 cut(s)	830
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	5 cut(s)	53, 255, 540, 820, 821
BssNI	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	55, 251
Bst4CI	ACNGT	3 cut(s)	121, 397, 667
Bst6I	CTCTTC	2 cut(s)	137, 902
BstACI	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
BstAFI	CTTAAG	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	830
BstC8I	GCNNGC	4 cut(s)	109, 495, 564, 755
BstDEI	CTNAG	2 cut(s)	555, 598
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	352, 655, 723
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	2 cut(s)	165, 244
BstHHI	GCGC	4 cut(s)	164, 214, 243, 772
BstMAI	GTCTC	2 cut(s)	335, 451
BstNI	CCWGG	2 cut(s)	55, 251
BstSCI	CCNGG	8 cut(s)	53, 228, 249, 308, 461, 473, 819, 820
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	508, 523, 586
BstXI	CCANNNNNNTGG	1 cut(s)	493
BsuRI	GGCC	9 cut(s)	58, 197, 254, 384, 432, 485, 509, 607, 826
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	352, 655, 723
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	4 cut(s)	109, 495, 564, 755
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	4 cut(s)	164, 214, 243, 772
Cfr13I	GGNCC	7 cut(s)	57, 430, 431, 471, 507, 605, 824
Cfr9I	CCCGGG	1 cut(s)	820
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	611, 658
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	2 cut(s)	611, 658
DdeI	CTNAG	2 cut(s)	555, 598
DinI	GGCGCC	1 cut(s)	242
DrdI	GACNNNNNNGTC	2 cut(s)	281, 668
DseDI	GACNNNNNNGTC	2 cut(s)	281, 668
EaeI	YGGCCR	3 cut(s)	195, 382, 483
Eam1104I	CTCTTC	2 cut(s)	137, 902
EarI	CTCTTC	2 cut(s)	137, 902
EciI	GGCGGA	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	820
EcoO109I	RGGNCCY	2 cut(s)	430, 824
EcoRII	CCWGG	2 cut(s)	53, 249
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	434
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	1 cut(s)	544
FaiI	YATR	5 cut(s)	62, 334, 542, 761, 789
FalI	AAGNNNNNCTT	6 cut(s)	116, 148, 281, 313, 561, 593
FaqI	GGGAC	2 cut(s)	383, 484
FatI	CATG	1 cut(s)	540
FauI	CCCGC	3 cut(s)	116, 154, 705
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	3 cut(s)	359, 662, 730
FriOI	GRGCYC	1 cut(s)	434
GlaI	GCGC	4 cut(s)	163, 213, 242, 771
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	2 cut(s)	165, 244
HaeIII	GGCC	9 cut(s)	58, 197, 254, 384, 432, 485, 509, 607, 826
HapII	CCGG	5 cut(s)	230, 309, 462, 474, 821
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	4 cut(s)	164, 214, 243, 772
Hin1I	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	4 cut(s)	162, 212, 241, 770
HinP1I	GCGC	4 cut(s)	162, 212, 241, 770
HincII	GTYRAC	3 cut(s)	157, 355, 420
HindII	GTYRAC	3 cut(s)	157, 355, 420
HinfI	GANTC	2 cut(s)	688, 748
HpaII	CCGG	5 cut(s)	230, 309, 462, 474, 821
Hpy166II	GTNNAC	3 cut(s)	157, 355, 420
Hpy188I	TCNGA	3 cut(s)	226, 366, 859
Hpy188III	TCNNGA	2 cut(s)	286, 677
Hpy8I	GTNNAC	3 cut(s)	157, 355, 420
Hpy99I	CGWCG	3 cut(s)	155, 158, 461
HpyAV	CCTTC	7 cut(s)	283, 493, 497, 625, 826, 837, 880
HpyCH4III	ACNGT	3 cut(s)	121, 397, 667
HpyCH4IV	ACGT	2 cut(s)	153, 351
HpyCH4V	TGCA	1 cut(s)	548
HpyF3I	CTNAG	2 cut(s)	555, 598
HpySE526I	ACGT	2 cut(s)	153, 351
Hsp92I	GRCGYC	5 cut(s)	5, 153, 241, 351, 459
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	4 cut(s)	162, 212, 241, 770
KasI	GGCGCC	1 cut(s)	240
Lsp1109I	GCAGC	3 cut(s)	508, 523, 586
MaeII	ACGT	2 cut(s)	153, 351
MaeIII	GTNAC	1 cut(s)	514
MbiI	CCGCTC	1 cut(s)	319
MboII	GAAGA	7 cut(s)	58, 124, 337, 340, 424, 895, 919
MhlI	GDGCHC	1 cut(s)	434
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	3 cut(s)	620, 929, 967
MluNI	TGGCCA	1 cut(s)	485
Mly113I	GGCGCC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	2 cut(s)	579, 584
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	493
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	5 cut(s)	230, 309, 462, 474, 821
MspR9I	CCNGG	8 cut(s)	55, 230, 251, 310, 463, 475, 821, 822
MvaI	CCWGG	2 cut(s)	55, 251
MvnI	CGCG	1 cut(s)	212
NarI	GGCGCC	1 cut(s)	241
NciI	CCSGG	6 cut(s)	230, 310, 463, 475, 821, 822
NcoI	CCATGG	1 cut(s)	540
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	5 cut(s)	242, 432, 472, 508, 825
NmeAIII	GCCGAG	2 cut(s)	280, 360
NmuCI	GTSAC	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 836
PfeI	GAWTC	2 cut(s)	688, 748
PluTI	GGCGCC	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	53, 249
PspGI	CCWGG	2 cut(s)	53, 249
PspN4I	GGNNCC	5 cut(s)	242, 432, 472, 508, 825
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	7 cut(s)	57, 430, 431, 471, 507, 605, 824
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	612, 659
RsaNI	GTAC	2 cut(s)	611, 658
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	579, 584
Sau96I	GGNCC	7 cut(s)	57, 430, 431, 471, 507, 605, 824
ScaI	AGTACT	1 cut(s)	612
ScrFI	CCNGG	8 cut(s)	55, 230, 251, 310, 463, 475, 821, 822
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	7 cut(s)	156, 264, 285, 354, 579, 647, 891
SfoI	GGCGCC	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	830
SinI	GGWCC	1 cut(s)	471
SmaI	CCCGGG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	620, 929, 967
SspDI	GGCGCC	1 cut(s)	240
StyD4I	CCNGG	8 cut(s)	53, 228, 249, 308, 461, 473, 819, 820
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	121, 397, 667
TaiI	ACGT	2 cut(s)	156, 354
TaqI	TCGA	5 cut(s)	156, 315, 830, 941, 951
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	3 cut(s)	620, 929, 967
TatI	WGTACW	1 cut(s)	610
TauI	GCSGC	9 cut(s)	176, 186, 189, 200, 209, 212, 246, 270, 273
TfiI	GAWTC	2 cut(s)	688, 748
Tru1I	TTAA	2 cut(s)	579, 584
Tru9I	TTAA	2 cut(s)	579, 584
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	521, 536, 574
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	425, 680, 726
TspGWI	ACGGA	2 cut(s)	351, 359
TspMI	CCCGGG	1 cut(s)	820
TspRI	CASTG	1 cut(s)	672
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	620
XmaI	CCCGGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	156
ZraI	GACGTC	2 cut(s)	154, 352
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.