Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G23980 AT4G23980 |
| fragaria_vesca | FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 |
| malus_domestica | MD06G1111100.v1.1 MD14G1131900.v1.1 |
| prunus_persica | Prupe.5G123400_v2.0.a1 |
| pyrus_communis | pycom06g10410 |
| rosa_chinensis | RchiOBHm_Chr7g0186081 |
| rosa_laevigata | RLG00000004866 |
| rosa_multiflora | Rmu_sc0000194.1_g000026 |
| rosa_roxburghii | Rroxscaffold_3G00268450 |
| rosa_rugosa | Rorug06G0472100 |
| rosa_samantha | Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500 |
| rosa_wichuraiana | Rw7G006530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 816 |
| AatII | GACGTC | 1 cut(s) | 1197 |
| Acc16I | TGCGCA | 1 cut(s) | 294 |
| Acc36I | ACCTGC | 1 cut(s) | 1102 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1516 |
| AccII | CGCG | 2 cut(s) | 461, 1710 |
| AccIII | TCCGGA | 1 cut(s) | 187 |
| AciI | CCGC | 1 cut(s) | 92 |
| AclWI | GGATC | 1 cut(s) | 1889 |
| AcoI | YGGCCR | 1 cut(s) | 1361 |
| AcsI | RAATTY | 1 cut(s) | 1907 |
| AcuI | CTGAAG | 2 cut(s) | 1239, 1584 |
| AcyI | GRCGYC | 2 cut(s) | 694, 1194 |
| AfaI | GTAC | 3 cut(s) | 68, 427, 607 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 103, 435, 508, 1516, 1621 |
| AhlI | ACTAGT | 1 cut(s) | 338 |
| AjiI | CACGTC | 1 cut(s) | 1954 |
| AjnI | CCWGG | 1 cut(s) | 1061 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 842, 874 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 45, 77, 116, 148 |
| AluBI | AGCT | 8 cut(s) | 76, 259, 1160, 1287, 1457, 1643, 1689, 1736 |
| AluI | AGCT | 8 cut(s) | 76, 259, 1160, 1287, 1457, 1643, 1689, 1736 |
| Alw26I | GTCTC | 4 cut(s) | 574, 1060, 1445, 1661 |
| AlwI | GGATC | 1 cut(s) | 1889 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 262, 1163, 1460 |
| Ama87I | CYCGRG | 1 cut(s) | 1294 |
| Aor13HI | TCCGGA | 1 cut(s) | 187 |
| AoxI | GGCC | 7 cut(s) | 84, 94, 148, 1133, 1222, 1361, 1828 |
| ApaI | GGGCCC | 1 cut(s) | 98 |
| ApeKI | GCWGC | 5 cut(s) | 31, 259, 714, 1214, 1284 |
| ApoI | RAATTY | 1 cut(s) | 1907 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 41, 940 |
| AspLEI | GCGC | 3 cut(s) | 10, 295, 1508 |
| AspS9I | GGNCC | 5 cut(s) | 94, 95, 1352, 1423, 1829 |
| AsuC2I | CCSGG | 2 cut(s) | 71, 637 |
| AsuHPI | GGTGA | 4 cut(s) | 214, 1650, 1901, 1933 |
| AvaI | CYCGRG | 1 cut(s) | 1294 |
| AvaII | GGWCC | 2 cut(s) | 1352, 1423 |
| AxyI | CCTNAGG | 1 cut(s) | 312 |
| BaeGI | GKGCMC | 1 cut(s) | 98 |
| BalI | TGGCCA | 1 cut(s) | 1363 |
| BanII | GRGCYC | 1 cut(s) | 98 |
| BauI | CACGAG | 1 cut(s) | 101 |
| BbsI | GAAGAC | 1 cut(s) | 1986 |
| BbvI | GCAGC | 5 cut(s) | 43, 246, 726, 1201, 1296 |
| BccI | CCATC | 3 cut(s) | 594, 730, 1301 |
| BceAI | ACGGC | 1 cut(s) | 1997 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 272, 306 |
| BciT130I | CCWGG | 1 cut(s) | 1063 |
| BciVI | GTATCC | 1 cut(s) | 412 |
| BcnI | CCSGG | 2 cut(s) | 71, 637 |
| BcoDI | GTCTC | 4 cut(s) | 574, 1060, 1445, 1661 |
| BcuI | ACTAGT | 1 cut(s) | 338 |
| BfaI | CTAG | 4 cut(s) | 339, 1142, 1701, 2000 |
| BfoI | RGCGCY | 1 cut(s) | 1509 |
| BfuAI | ACCTGC | 1 cut(s) | 1102 |
| BfuI | GTATCC | 1 cut(s) | 412 |
| BglII | AGATCT | 1 cut(s) | 526 |
| BisI | GCNGC | 5 cut(s) | 32, 260, 715, 1215, 1285 |
| BlsI | GCNGC | 5 cut(s) | 33, 261, 716, 1216, 1286 |
| BmcAI | AGTACT | 1 cut(s) | 607 |
| Bme1390I | CCNGG | 3 cut(s) | 71, 637, 1063 |
| Bme18I | GGWCC | 2 cut(s) | 1352, 1423 |
| BmeT110I | CYCGRG | 1 cut(s) | 1294 |
| BmgBI | CACGTC | 1 cut(s) | 1954 |
| BmgT120I | GGNCC | 5 cut(s) | 94, 95, 1352, 1423, 1829 |
| BmiI | GGNNCC | 3 cut(s) | 96, 333, 1558 |
| BmrFI | CCNGG | 3 cut(s) | 71, 637, 1063 |
| BmsI | GCATC | 8 cut(s) | 19, 179, 782, 1040, 1407, 1556, 1703, 1869 |
| BpiI | GAAGAC | 1 cut(s) | 1986 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1090, 1122 |
| BpmI | CTGGAG | 2 cut(s) | 912, 1817 |
| BpuEI | CTTGAG | 3 cut(s) | 104, 721, 983 |
| BpuMI | CCSGG | 2 cut(s) | 71, 637 |
| BsaAI | YACGTR | 1 cut(s) | 1835 |
| BsaHI | GRCGYC | 2 cut(s) | 694, 1194 |
| BsaI | GGTCTC | 1 cut(s) | 1060 |
| BsaJI | CCNNGG | 8 cut(s) | 209, 430, 575, 636, 821, 1061, 1062, 1898 |
| BsaWI | WCCGGW | 1 cut(s) | 187 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 45, 75, 116, 146, 1790, 1820 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 103, 435, 508, 1516, 1621 |
| Bse118I | RCCGGY | 1 cut(s) | 1886 |
| Bse1I | ACTGG | 4 cut(s) | 486, 1354, 1558, 1800 |
| Bse21I | CCTNAGG | 1 cut(s) | 312 |
| BseAI | TCCGGA | 1 cut(s) | 187 |
| BseBI | CCWGG | 1 cut(s) | 1063 |
| BseDI | CCNNGG | 8 cut(s) | 209, 430, 575, 636, 821, 1061, 1062, 1898 |
| BseGI | GGATG | 4 cut(s) | 605, 1027, 1031, 1694 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 103, 435, 508, 1516, 1621 |
| BseMII | CTCAG | 8 cut(s) | 303, 456, 506, 521, 670, 1440, 1596, 1664 |
| BseNI | ACTGG | 4 cut(s) | 486, 1354, 1558, 1800 |
| BseRI | GAGGAG | 2 cut(s) | 966, 1814 |
| BseSI | GKGCMC | 1 cut(s) | 98 |
| BseXI | GCAGC | 5 cut(s) | 43, 246, 726, 1201, 1296 |
| BseYI | CCCAGC | 2 cut(s) | 17, 1156 |
| BsgI | GTGCAG | 1 cut(s) | 1989 |
| Bsh1236I | CGCG | 2 cut(s) | 461, 1710 |
| BshFI | GGCC | 7 cut(s) | 86, 96, 150, 1135, 1224, 1363, 1830 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1294 |
| BsiSI | CCGG | 4 cut(s) | 71, 188, 636, 1887 |
| BslFI | GGGAC | 5 cut(s) | 95, 686, 1130, 1833, 2026 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 103, 435, 508, 1516, 1621 |
| BsmAI | GTCTC | 4 cut(s) | 574, 1060, 1445, 1661 |
| BsmFI | GGGAC | 5 cut(s) | 95, 686, 1130, 1833, 2026 |
| BsnI | GGCC | 7 cut(s) | 86, 96, 150, 1135, 1224, 1363, 1830 |
| Bso31I | GGTCTC | 1 cut(s) | 1060 |
| BsoBI | CYCGRG | 1 cut(s) | 1294 |
| Bsp120I | GGGCCC | 1 cut(s) | 94 |
| Bsp1286I | GDGCHC | 1 cut(s) | 98 |
| Bsp13I | TCCGGA | 1 cut(s) | 187 |
| Bsp143I | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| Bsp19I | CCATGG | 2 cut(s) | 430, 1898 |
| BspACI | CCGC | 1 cut(s) | 92 |
| BspANI | GGCC | 7 cut(s) | 86, 96, 150, 1135, 1224, 1363, 1830 |
| BspCNI | CTCAG | 8 cut(s) | 304, 457, 505, 520, 669, 1441, 1595, 1665 |
| BspEI | TCCGGA | 1 cut(s) | 187 |
| BspFNI | CGCG | 2 cut(s) | 461, 1710 |
| BspLI | GGNNCC | 3 cut(s) | 96, 333, 1558 |
| BspMI | ACCTGC | 1 cut(s) | 1102 |
| BspPI | GGATC | 1 cut(s) | 1889 |
| BspTNI | GGTCTC | 1 cut(s) | 1060 |
| BsrFI | RCCGGY | 1 cut(s) | 1886 |
| BsrI | ACTGG | 4 cut(s) | 486, 1354, 1558, 1800 |
| BssAI | RCCGGY | 1 cut(s) | 1886 |
| BssECI | CCNNGG | 8 cut(s) | 209, 430, 575, 636, 821, 1061, 1062, 1898 |
| BssMI | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| BssNI | GRCGYC | 2 cut(s) | 694, 1194 |
| BssSI | CACGAG | 1 cut(s) | 101 |
| BssT1I | CCWWGG | 3 cut(s) | 430, 821, 1898 |
| Bst2BI | CACGAG | 1 cut(s) | 101 |
| Bst2UI | CCWGG | 1 cut(s) | 1063 |
| Bst4CI | ACNGT | 3 cut(s) | 1117, 1333, 2017 |
| BstACI | GRCGYC | 2 cut(s) | 694, 1194 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 779 |
| BstBAI | YACGTR | 1 cut(s) | 1835 |
| BstC8I | GCNNGC | 9 cut(s) | 94, 264, 719, 749, 765, 780, 1099, 1263, 1884 |
| BstDSI | CCRYGG | 3 cut(s) | 430, 575, 1898 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| BstF5I | GGATG | 4 cut(s) | 605, 1027, 1031, 1694 |
| BstFNI | CGCG | 2 cut(s) | 461, 1710 |
| BstH2I | RGCGCY | 1 cut(s) | 1509 |
| BstHHI | GCGC | 3 cut(s) | 10, 295, 1508 |
| BstKTI | GATC | 6 cut(s) | 529, 735, 1004, 1240, 1827, 1897 |
| BstMAI | GTCTC | 4 cut(s) | 574, 1060, 1445, 1661 |
| BstMBI | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 14, 256, 553, 779, 1284 |
| BstNI | CCWGG | 1 cut(s) | 1063 |
| BstNSI | RCATGY | 5 cut(s) | 254, 721, 751, 755, 782 |
| BstSCI | CCNGG | 3 cut(s) | 69, 635, 1061 |
| BstSLI | GKGCMC | 1 cut(s) | 98 |
| BstUI | CGCG | 2 cut(s) | 461, 1710 |
| BstV1I | GCAGC | 5 cut(s) | 43, 246, 726, 1201, 1296 |
| BstV2I | GAAGAC | 1 cut(s) | 1986 |
| BstX2I | RGATCY | 1 cut(s) | 526 |
| BstYI | RGATCY | 1 cut(s) | 526 |
| Bsu36I | CCTNAGG | 1 cut(s) | 312 |
| BsuI | GTATCC | 1 cut(s) | 412 |
| BsuRI | GGCC | 7 cut(s) | 86, 96, 150, 1135, 1224, 1363, 1830 |
| BtgI | CCRYGG | 3 cut(s) | 430, 575, 1898 |
| BtgZI | GCGATG | 1 cut(s) | 759 |
| BtrI | CACGTC | 1 cut(s) | 1954 |
| BtsCI | GGATG | 4 cut(s) | 605, 1027, 1031, 1694 |
| BtsI | GCAGTG | 1 cut(s) | 1755 |
| BtsIMutI | CAGTG | 7 cut(s) | 479, 1521, 1560, 1590, 1670, 1755, 1857 |
| BveI | ACCTGC | 1 cut(s) | 1102 |
| Cac8I | GCNNGC | 9 cut(s) | 94, 264, 719, 749, 765, 780, 1099, 1263, 1884 |
| CaiI | CAGNNNCTG | 3 cut(s) | 262, 1163, 1460 |
| CfoI | GCGC | 3 cut(s) | 10, 295, 1508 |
| Cfr10I | RCCGGY | 1 cut(s) | 1886 |
| Cfr13I | GGNCC | 5 cut(s) | 94, 95, 1352, 1423, 1829 |
| CseI | GACGC | 3 cut(s) | 683, 932, 1699 |
| Csp6I | GTAC | 3 cut(s) | 67, 426, 606 |
| CviQI | GTAC | 3 cut(s) | 67, 426, 606 |
| DpnI | GATC | 6 cut(s) | 528, 734, 1003, 1239, 1826, 1896 |
| DpnII | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| EaeI | YGGCCR | 1 cut(s) | 1361 |
| Eco130I | CCWWGG | 3 cut(s) | 430, 821, 1898 |
| Eco147I | AGGCCT | 2 cut(s) | 86, 1135 |
| Eco24I | GRGCYC | 1 cut(s) | 98 |
| Eco31I | GGTCTC | 1 cut(s) | 1060 |
| Eco32I | GATATC | 1 cut(s) | 1813 |
| Eco47I | GGWCC | 2 cut(s) | 1352, 1423 |
| Eco57I | CTGAAG | 2 cut(s) | 1239, 1584 |
| Eco81I | CCTNAGG | 1 cut(s) | 312 |
| Eco88I | CYCGRG | 1 cut(s) | 1294 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| EcoRI | GAATTC | 1 cut(s) | 1907 |
| EcoRII | CCWGG | 1 cut(s) | 1061 |
| EcoRV | GATATC | 1 cut(s) | 1813 |
| EcoT14I | CCWWGG | 3 cut(s) | 430, 821, 1898 |
| EcoT22I | ATGCAT | 2 cut(s) | 252, 753 |
| EcoT38I | GRGCYC | 1 cut(s) | 98 |
| ErhI | CCWWGG | 3 cut(s) | 430, 821, 1898 |
| FaqI | GGGAC | 5 cut(s) | 95, 686, 1130, 1833, 2026 |
| FauI | CCCGC | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 5 cut(s) | 32, 260, 715, 1215, 1285 |
| FokI | GGATG | 4 cut(s) | 612, 1018, 1034, 1681 |
| FriOI | GRGCYC | 1 cut(s) | 98 |
| Fsp4HI | GCNGC | 5 cut(s) | 32, 260, 715, 1215, 1285 |
| FspBI | CTAG | 4 cut(s) | 339, 1142, 1701, 2000 |
| FspI | TGCGCA | 1 cut(s) | 294 |
| GlaI | GCGC | 3 cut(s) | 9, 294, 1507 |
| GluI | GCNGC | 5 cut(s) | 32, 260, 715, 1215, 1285 |
| GsaI | CCCAGC | 2 cut(s) | 21, 1160 |
| GsuI | CTGGAG | 2 cut(s) | 912, 1817 |
| HaeII | RGCGCY | 1 cut(s) | 1509 |
| HaeIII | GGCC | 7 cut(s) | 86, 96, 150, 1135, 1224, 1363, 1830 |
| HapII | CCGG | 4 cut(s) | 71, 188, 636, 1887 |
| HgaI | GACGC | 3 cut(s) | 683, 932, 1699 |
| HhaI | GCGC | 3 cut(s) | 10, 295, 1508 |
| Hin1I | GRCGYC | 2 cut(s) | 694, 1194 |
| Hin6I | GCGC | 3 cut(s) | 8, 293, 1506 |
| HinP1I | GCGC | 3 cut(s) | 8, 293, 1506 |
| HincII | GTYRAC | 2 cut(s) | 707, 871 |
| HindII | GTYRAC | 2 cut(s) | 707, 871 |
| HpaI | GTTAAC | 1 cut(s) | 871 |
| HpaII | CCGG | 4 cut(s) | 71, 188, 636, 1887 |
| HphI | GGTGA | 4 cut(s) | 214, 1650, 1901, 1933 |
| Hpy166II | GTNNAC | 4 cut(s) | 388, 707, 871, 1753 |
| Hpy188I | TCNGA | 6 cut(s) | 367, 418, 566, 659, 1600, 1612 |
| Hpy8I | GTNNAC | 4 cut(s) | 388, 707, 871, 1753 |
| HpyAV | CCTTC | 8 cut(s) | 76, 482, 930, 1214, 1559, 1763, 1862, 2003 |
| HpyCH4III | ACNGT | 3 cut(s) | 1117, 1333, 2017 |
| HpyCH4IV | ACGT | 3 cut(s) | 1194, 1834, 1953 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 14, 256, 553, 779, 1284 |
| HpySE526I | ACGT | 3 cut(s) | 1194, 1834, 1953 |
| Hsp92I | GRCGYC | 2 cut(s) | 694, 1194 |
| HspAI | GCGC | 3 cut(s) | 8, 293, 1506 |
| Kpn2I | TCCGGA | 1 cut(s) | 187 |
| KspAI | GTTAAC | 1 cut(s) | 871 |
| Kzo9I | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| LmnI | GCTCC | 5 cut(s) | 53, 73, 157, 931, 1165 |
| Lsp1109I | GCAGC | 5 cut(s) | 43, 246, 726, 1201, 1296 |
| LweI | GCATC | 8 cut(s) | 19, 179, 782, 1040, 1407, 1556, 1703, 1869 |
| MaeI | CTAG | 4 cut(s) | 339, 1142, 1701, 2000 |
| MaeII | ACGT | 3 cut(s) | 1194, 1834, 1953 |
| MaeIII | GTNAC | 5 cut(s) | 613, 1195, 1889, 1913, 2017 |
| MalI | GATC | 6 cut(s) | 528, 734, 1003, 1239, 1826, 1896 |
| MboI | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| MboII | GAAGA | 8 cut(s) | 241, 521, 1135, 1247, 1314, 1938, 1969, 1986 |
| MfeI | CAATTG | 2 cut(s) | 1202, 1646 |
| MflI | RGATCY | 1 cut(s) | 526 |
| MhlI | GDGCHC | 1 cut(s) | 98 |
| MlsI | TGGCCA | 1 cut(s) | 1363 |
| MluNI | TGGCCA | 1 cut(s) | 1363 |
| MlyI | GAGTC | 5 cut(s) | 484, 838, 1034, 1604, 1714 |
| MmeI | TCCRAC | 5 cut(s) | 664, 868, 1412, 1623, 1884 |
| Mox20I | TGGCCA | 1 cut(s) | 1363 |
| Mph1103I | ATGCAT | 2 cut(s) | 252, 753 |
| MroI | TCCGGA | 1 cut(s) | 187 |
| MroXI | GAANNNNTTC | 2 cut(s) | 41, 940 |
| MscI | TGGCCA | 1 cut(s) | 1363 |
| MseI | TTAA | 8 cut(s) | 216, 305, 552, 629, 870, 1008, 1397, 2032 |
| MslI | CAYNNNNRTG | 1 cut(s) | 537 |
| Msp20I | TGGCCA | 1 cut(s) | 1363 |
| MspA1I | CMGCKG | 2 cut(s) | 259, 1287 |
| MspI | CCGG | 4 cut(s) | 71, 188, 636, 1887 |
| MspR9I | CCNGG | 3 cut(s) | 71, 637, 1063 |
| MunI | CAATTG | 2 cut(s) | 1202, 1646 |
| MvaI | CCWGG | 1 cut(s) | 1063 |
| MvnI | CGCG | 2 cut(s) | 461, 1710 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 14, 256, 553, 779, 1284 |
| NciI | CCSGG | 2 cut(s) | 71, 637 |
| NcoI | CCATGG | 2 cut(s) | 430, 1898 |
| NdeII | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| NlaIV | GGNNCC | 3 cut(s) | 96, 333, 1558 |
| NmeAIII | GCCGAG | 1 cut(s) | 1618 |
| NmuCI | GTSAC | 2 cut(s) | 1195, 1889 |
| NsbI | TGCGCA | 1 cut(s) | 294 |
| NsiI | ATGCAT | 2 cut(s) | 252, 753 |
| NspI | RCATGY | 5 cut(s) | 254, 721, 751, 755, 782 |
| PaeI | GCATGC | 3 cut(s) | 721, 751, 782 |
| PaeR7I | CTCGAG | 1 cut(s) | 1294 |
| PasI | CCCWGGG | 1 cut(s) | 1062 |
| PceI | AGGCCT | 2 cut(s) | 86, 1135 |
| PdmI | GAANNNNTTC | 2 cut(s) | 41, 940 |
| PfeI | GAWTC | 8 cut(s) | 196, 205, 232, 641, 897, 989, 1252, 1929 |
| PflFI | GACNNNGTC | 1 cut(s) | 1052 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1516 |
| PkrI | GCNGC | 5 cut(s) | 33, 261, 716, 1216, 1286 |
| PleI | GAGTC | 5 cut(s) | 484, 837, 1033, 1603, 1713 |
| PpsI | GAGTC | 5 cut(s) | 484, 837, 1033, 1603, 1713 |
| Ppu21I | YACGTR | 1 cut(s) | 1835 |
| PsiI | TTATAA | 1 cut(s) | 816 |
| Psp6I | CCWGG | 1 cut(s) | 1061 |
| PspFI | CCCAGC | 2 cut(s) | 17, 1156 |
| PspGI | CCWGG | 1 cut(s) | 1061 |
| PspN4I | GGNNCC | 3 cut(s) | 96, 333, 1558 |
| PspOMI | GGGCCC | 1 cut(s) | 94 |
| PspPI | GGNCC | 5 cut(s) | 94, 95, 1352, 1423, 1829 |
| PstNI | CAGNNNCTG | 3 cut(s) | 262, 1163, 1460 |
| PsuI | RGATCY | 1 cut(s) | 526 |
| PsyI | GACNNNGTC | 1 cut(s) | 1052 |
| PvuII | CAGCTG | 2 cut(s) | 259, 1287 |
| RsaI | GTAC | 3 cut(s) | 68, 427, 607 |
| RsaNI | GTAC | 3 cut(s) | 67, 426, 606 |
| RseI | CAYNNNNRTG | 1 cut(s) | 537 |
| SaqAI | TTAA | 8 cut(s) | 216, 305, 552, 629, 870, 1008, 1397, 2032 |
| SatI | GCNGC | 5 cut(s) | 32, 260, 715, 1215, 1285 |
| Sau3AI | GATC | 6 cut(s) | 526, 732, 1001, 1237, 1824, 1894 |
| Sau96I | GGNCC | 5 cut(s) | 94, 95, 1352, 1423, 1829 |
| ScaI | AGTACT | 1 cut(s) | 607 |
| SchI | GAGTC | 5 cut(s) | 484, 838, 1034, 1604, 1714 |
| ScrFI | CCNGG | 3 cut(s) | 71, 637, 1063 |
| SduI | GDGCHC | 1 cut(s) | 98 |
| SfaNI | GCATC | 8 cut(s) | 19, 179, 782, 1040, 1407, 1556, 1703, 1869 |
| Sfr274I | CTCGAG | 1 cut(s) | 1294 |
| SinI | GGWCC | 2 cut(s) | 1352, 1423 |
| SlaI | CTCGAG | 1 cut(s) | 1294 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 537 |
| SmlI | CTYRAG | 4 cut(s) | 119, 736, 962, 1294 |
| SmoI | CTYRAG | 4 cut(s) | 119, 736, 962, 1294 |
| SpeI | ACTAGT | 1 cut(s) | 338 |
| SphI | GCATGC | 3 cut(s) | 721, 751, 782 |
| SseBI | AGGCCT | 2 cut(s) | 86, 1135 |
| SsiI | CCGC | 1 cut(s) | 92 |
| SspI | AATATT | 1 cut(s) | 40 |
| SspMI | CTAG | 4 cut(s) | 339, 1142, 1701, 2000 |
| StuI | AGGCCT | 2 cut(s) | 86, 1135 |
| StyD4I | CCNGG | 3 cut(s) | 69, 635, 1061 |
| StyI | CCWWGG | 3 cut(s) | 430, 821, 1898 |
| TaaI | ACNGT | 3 cut(s) | 1117, 1333, 2017 |
| TaiI | ACGT | 3 cut(s) | 1197, 1837, 1956 |
| TaqI | TCGA | 4 cut(s) | 45, 227, 1295, 1744 |
| TatI | WGTACW | 1 cut(s) | 605 |
| TfiI | GAWTC | 8 cut(s) | 196, 205, 232, 641, 897, 989, 1252, 1929 |
| Tru1I | TTAA | 8 cut(s) | 216, 305, 552, 629, 870, 1008, 1397, 2032 |
| Tru9I | TTAA | 8 cut(s) | 216, 305, 552, 629, 870, 1008, 1397, 2032 |
| TscAI | CASTG | 7 cut(s) | 486, 1521, 1567, 1590, 1677, 1755, 1864 |
| TseFI | GTSAC | 2 cut(s) | 1195, 1889 |
| TseI | GCWGC | 5 cut(s) | 31, 259, 714, 1214, 1284 |
| Tsp45I | GTSAC | 2 cut(s) | 1195, 1889 |
| TspDTI | ATGAA | 4 cut(s) | 521, 826, 1383, 1881 |
| TspGWI | ACGGA | 2 cut(s) | 293, 592 |
| TspRI | CASTG | 7 cut(s) | 486, 1521, 1567, 1590, 1677, 1755, 1864 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1052 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1516 |
| VpaK11BI | GGWCC | 2 cut(s) | 1352, 1423 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1619 |
| XapI | RAATTY | 1 cut(s) | 1907 |
| XceI | RCATGY | 5 cut(s) | 254, 721, 751, 755, 782 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1839 |
| XhoI | CTCGAG | 1 cut(s) | 1294 |
| XmnI | GAANNNNTTC | 2 cut(s) | 41, 940 |
| XspI | CTAG | 4 cut(s) | 339, 1142, 1701, 2000 |
| ZraI | GACGTC | 1 cut(s) | 1195 |
| ZrmI | AGTACT | 1 cut(s) | 607 |
| Zsp2I | ATGCAT | 2 cut(s) | 252, 753 |