Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009840

Physical Location & Seq

Genomic Coordinates Forward (+)

20929560 .. 20934282

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1131900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGGCGAATCGGGAAGGCGGCGATCTGTATCCGGAGCTATGGAAGGCCTGCGCGGGCCCACTAGTCGATGTGCCTCGCGTCCAGGAGAGAGTCTTCTACTTTCCACAGGGGCACATGGAACAACTGGAGGCGTCAACACCAACAAATCAGGAACTGAATCAAGGGATTCCGCAGTTCAATCTTCCCTCGAAGATTCTTTGCCGAGTTGTTAACGTTACCCTATTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATTACTTTAATTCCAGATGTAAATCAAACGGATCCTACTAGTCCTGATCCATGCCTTCCAGAACCTCAAAAACCTGCAGTTCACTCATTCTGCAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGCGGGTTTTCTGTTCTCCGGAAACACGCCACTGAATGCCTTCCTGCACTGGACATGACGCAGGCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTACGAGTGGCGATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCACTTGCTTACAACAGGATGGAGTACTTTCGTCACCTCCAAGAGATTAAGTGCTGGGGATTCCTTTGTATTTCTCAGAGGGGGCAACGGGGAGTTACGTGTTGGAGTTAGACGTCTTGCTCGTCAACAAAGCAGCATGCCATCATCGGTGATCTCGAGTCAAAGCATGCACGTAGGGGTTCTCGCAACTGCATCTCATGCAGTTGCAACCCGAACTCTTTTTGTCGTGTATTATAAGCCAAGGACAAGTCAGTTCATTATCGGTTTGAACAAGTATTTGGAGGCTGTCAACAATAAATTTTCAGTCGGAATGAGGTTCAAAATGAGGTTTGAGGGGGAGGATGCTCCCGAGAGAAGGTTTTCAGGCACAATAGTTGGTCTTGAAGATATATCTCCTCACTGGGCAGATTCAAAATGGCGGTCACTTAAAGTTCACTGGGATGAGTCTGCATCCATTCCAAGGCCTGATAGGGTATCGCCTTGGGAGATTGAACCTTTTGTCGCGTCAGTACTTCCGAGCCTTCCTCAACCAGCTGTGGTGAAGAACAAAAGGCCCCGACCACCCACTGAAATCCCAGCTCTTGATGCAATGAGTTCAACAGGGTCAGCTATGTGGAATTCTGGGCTGACACAGTCCCATGACACGTCAACACTGAGTGTCGCTGCTGAAGGCAAAAGAAGTGAAAATCATGTTGTATGGCATCATCAACAGGCAGACGTGATCAGCAATAACAACTCTGTTCCAAGGACTCAGATTGATGGGGGATGGTTGTCTTCTCAGGCAGGTGGTTCTCCGCACAGGTTCCAGGAAACAATGGAGGATAGTAAAAGTGTTTCTGCTTGGCCTGTTTACTCTGGATATTCAACTTCAAACTCATCAAAGCCTAAAAATGACTCAATGTTTGACCATGTTGAAAAAGAGAAGAAAACTGAGACAGGTACTAGTTGCCGAATTTTCGGTATAGACTTTACTAGTCATTCTACATGCTTCCCTGCCATGGAGAAGGCACATCCACAACCAATCAGTGGACCTACTGGAACCACTGAAGGACGTGTTAGTAACCCGTCAGCAGCTGAGTCAGACCAGAAATCTGACCTTTCAAAGGCTTCTAAAGAAAGCAAACCTGGACAGTTGCAATTATCACCTAAGGAGACGCAGAGCAAGTACAGTTGCTCTACGTCCGCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGATAGCTGTTGGCCGAGCAGTGGACTTGACGATGTTGGAAGGATATGATCAGCTTATAGATGAACTGGAGGAGATGTTTGACATTAAGGGACAGATTCGCCCCGGTAACATGTGGCAAATTGTCTTTACCGATAATGAAGGAGATATGATGCTTATGGGCGATGACCCGTGGTCGGAGTTTTGTGACATGGTGAAAAGGATCTTTATATGTTGGAGTCAAGATGTGAAGAAAATCAGCGCAGGCTGCGAACTTCCATTGTCGTCACTAGAAGTCGAAGGGGGGACGGTCATAAGCTCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

684

Amino Acids

75.66

Weight (kDa)

6.13

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	116 - 216	7.2e-23	B3 DNA binding domain
BRWD_AD	PF25313	252 - 344	7.4e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	263 - 344	7.3e-36	Auxin response factor ancillary domain
AUX_IAA	PF02309	562 - 610	2.7e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23980 AT4G23980
fragaria_vesca	FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690
malus_domestica	MD06G1111100.v1.1 MD14G1131900.v1.1
prunus_persica	Prupe.5G123400_v2.0.a1
pyrus_communis	pycom06g10410
rosa_chinensis	RchiOBHm_Chr7g0186081
rosa_laevigata	RLG00000004866
rosa_multiflora	Rmu_sc0000194.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268450
rosa_rugosa	Rorug06G0472100
rosa_samantha	Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500
rosa_wichuraiana	Rw7G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AarI	CACCTGC	1 cut(s)	1307
AatII	GACGTC	1 cut(s)	649
Acc36I	ACCTGC	2 cut(s)	340, 1307
AccB7I	CCANNNNNTGG	1 cut(s)	1559
AccII	CGCG	3 cut(s)	53, 78, 1037
AccIII	TCCGGA	2 cut(s)	31, 402
AciI	CCGC	7 cut(s)	18, 53, 170, 387, 952, 1328, 1716
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	5 cut(s)	284, 297, 299, 486, 1955
AcoI	YGGCCR	1 cut(s)	1759
AcsI	RAATTY	3 cut(s)	830, 1150, 1485
AcuI	CTGAAG	2 cut(s)	1221, 1599
AcyI	GRCGYC	2 cut(s)	131, 646
AdeI	CACNNNGTG	1 cut(s)	1190
AfaI	GTAC	4 cut(s)	559, 1044, 1474, 1700
AfiI	CCNNNNNNNGG	9 cut(s)	387, 460, 888, 993, 1531, 1559, 1636, 1768, 1921
AflIII	ACRYGT	4 cut(s)	631, 1176, 1585, 1857
AhdI	GACNNNNNGTC	1 cut(s)	1918
AhlI	ACTAGT	4 cut(s)	61, 296, 1475, 1505
AjiI	CACGTC	3 cut(s)	1179, 1252, 1586
AjnI	CCWGG	3 cut(s)	81, 1338, 1657
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	8 cut(s)	37, 1067, 1112, 1142, 1607, 1754, 1801, 2043
AluI	AGCT	8 cut(s)	37, 1067, 1112, 1142, 1607, 1754, 1801, 2043
Alw26I	GTCTC	2 cut(s)	1460, 1679
AlwI	GGATC	5 cut(s)	284, 297, 299, 486, 1955
AlwNI	CAGNNNCTG	2 cut(s)	154, 1607
Ama87I	CYCGRG	2 cut(s)	688, 881
Aor13HI	TCCGGA	2 cut(s)	31, 402
AoxI	GGCC	6 cut(s)	45, 55, 995, 1085, 1376, 1759
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	4 cut(s)	666, 1196, 1604, 1992
ApoI	RAATTY	3 cut(s)	830, 1150, 1485
ArsI	GACNNNNNNTTYG	4 cut(s)	938, 970, 1418, 1450
Asp700I	GAANNNNTTC	2 cut(s)	423, 892
AspLEI	GCGC	2 cut(s)	53, 1988
AspS9I	GGNCC	4 cut(s)	55, 56, 1086, 1562
AsuC2I	CCSGG	1 cut(s)	1851
AsuHPI	GGTGA	5 cut(s)	559, 694, 1084, 1668, 1951
AvaI	CYCGRG	2 cut(s)	688, 881
AvaII	GGWCC	1 cut(s)	1562
AxyI	CCTNAGG	1 cut(s)	1680
BaeGI	GKGCMC	2 cut(s)	59, 114
BamHI	GGATCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	85, 1299
BbvI	GCAGC	4 cut(s)	678, 1183, 1616, 1979
BccI	CCATC	4 cut(s)	546, 682, 1286, 1293
BciT130I	CCWGG	3 cut(s)	83, 1340, 1659
BciVI	GTATCC	1 cut(s)	39
BclI	TGATCA	2 cut(s)	1254, 1795
BcnI	CCSGG	1 cut(s)	1851
BcoDI	GTCTC	2 cut(s)	1460, 1679
BcuI	ACTAGT	4 cut(s)	61, 296, 1475, 1505
BfaI	CTAG	5 cut(s)	62, 297, 1476, 1506, 2015
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	2 cut(s)	340, 1307
BfuI	GTATCC	1 cut(s)	39
BisI	GCNGC	5 cut(s)	19, 667, 1197, 1605, 1993
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	5 cut(s)	20, 668, 1198, 1606, 1994
BmcAI	AGTACT	2 cut(s)	559, 1044
Bme1390I	CCNGG	4 cut(s)	83, 1340, 1659, 1851
Bme18I	GGWCC	1 cut(s)	1562
BmeRI	GACNNNNNGTC	1 cut(s)	1918
BmeT110I	CYCGRG	2 cut(s)	688, 881
BmgBI	CACGTC	3 cut(s)	1179, 1252, 1586
BmgT120I	GGNCC	4 cut(s)	55, 56, 1086, 1562
BmiI	GGNNCC	5 cut(s)	57, 291, 1088, 1337, 1573
BmrFI	CCNGG	4 cut(s)	83, 1340, 1659, 1851
BmrI	ACTGGG	2 cut(s)	943, 979
BmsI	GCATC	6 cut(s)	734, 865, 992, 1108, 1243, 1887
BmuI	ACTGGG	2 cut(s)	943, 979
BpiI	GAAGAC	2 cut(s)	85, 1299
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
BpmI	CTGGAG	2 cut(s)	146, 1835
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	1851
BsaAI	YACGTR	2 cut(s)	632, 706
BsaBI	GATNNNNATC	2 cut(s)	27, 279
BsaHI	GRCGYC	2 cut(s)	131, 646
BsaWI	WCCGGW	2 cut(s)	31, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	1808, 1838
Bsc4I	CCNNNNNNNGG	9 cut(s)	387, 460, 888, 993, 1531, 1559, 1636, 1768, 1921
Bse1I	ACTGG	6 cut(s)	129, 438, 938, 974, 1573, 1818
Bse21I	CCTNAGG	1 cut(s)	1680
Bse3DI	GCAATG	1 cut(s)	1128
Bse8I	GATNNNNATC	2 cut(s)	27, 279
BseAI	TCCGGA	2 cut(s)	31, 402
BseBI	CCWGG	3 cut(s)	83, 1340, 1659
BseGI	GGATG	6 cut(s)	557, 880, 979, 983, 1304, 1543
BseJI	GATNNNNATC	2 cut(s)	27, 279
BseLI	CCNNNNNNNGG	9 cut(s)	387, 460, 888, 993, 1531, 1559, 1636, 1768, 1921
BseMI	GCAATG	1 cut(s)	1128
BseMII	CTCAG	8 cut(s)	219, 473, 622, 1178, 1298, 1325, 1455, 1599
BseNI	ACTGG	6 cut(s)	129, 438, 938, 974, 1573, 1818
BseRI	GAGGAG	2 cut(s)	918, 1832
BseSI	GKGCMC	2 cut(s)	59, 114
BseXI	GCAGC	4 cut(s)	678, 1183, 1616, 1979
BseYI	CCCAGC	2 cut(s)	587, 1108
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	3 cut(s)	53, 78, 1037
BshFI	GGCC	6 cut(s)	47, 57, 997, 1087, 1378, 1761
BsiHKCI	CYCGRG	2 cut(s)	688, 881
BsiSI	CCGG	3 cut(s)	32, 403, 1851
BslFI	GGGAC	3 cut(s)	1153, 1851, 2044
BslI	CCNNNNNNNGG	9 cut(s)	387, 460, 888, 993, 1531, 1559, 1636, 1768, 1921
BsmAI	GTCTC	2 cut(s)	1460, 1679
BsmBI	CGTCTC	1 cut(s)	1679
BsmFI	GGGAC	3 cut(s)	1153, 1851, 2044
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	6 cut(s)	47, 57, 997, 1087, 1378, 1761
BsoBI	CYCGRG	2 cut(s)	688, 881
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 114
Bsp13I	TCCGGA	2 cut(s)	31, 402
Bsp143I	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp19I	CCATGG	2 cut(s)	382, 1530
BspACI	CCGC	7 cut(s)	18, 53, 170, 387, 952, 1328, 1716
BspANI	GGCC	6 cut(s)	47, 57, 997, 1087, 1378, 1761
BspCNI	CTCAG	8 cut(s)	220, 472, 621, 1179, 1297, 1324, 1456, 1600
BspEI	TCCGGA	2 cut(s)	31, 402
BspFNI	CGCG	3 cut(s)	53, 78, 1037
BspLI	GGNNCC	5 cut(s)	57, 291, 1088, 1337, 1573
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	340, 1307
BspPI	GGATC	5 cut(s)	284, 297, 299, 486, 1955
BsrDI	GCAATG	1 cut(s)	1128
BsrI	ACTGG	6 cut(s)	129, 438, 938, 974, 1573, 1818
BssMI	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
BssNI	GRCGYC	2 cut(s)	131, 646
BssT1I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1277, 1530, 1731
Bst2UI	CCWGG	3 cut(s)	83, 1340, 1659
Bst4CI	ACNGT	4 cut(s)	1167, 1665, 1703, 2035
BstACI	GRCGYC	2 cut(s)	131, 646
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBAI	YACGTR	2 cut(s)	632, 706
BstC8I	GCNNGC	6 cut(s)	49, 55, 447, 671, 701, 1990
BstDEI	CTNAG	9 cut(s)	228, 459, 608, 1187, 1284, 1311, 1464, 1608, 1680
BstDSI	CCRYGG	4 cut(s)	382, 527, 1530, 1916
BstENI	CCTNNNNNAGG	1 cut(s)	1634
BstF5I	GGATG	6 cut(s)	557, 880, 979, 983, 1304, 1543
BstFNI	CGCG	3 cut(s)	53, 78, 1037
BstHHI	GCGC	2 cut(s)	53, 1988
BstKTI	GATC	8 cut(s)	25, 292, 307, 481, 687, 1257, 1798, 1950
BstMAI	GTCTC	2 cut(s)	1460, 1679
BstMBI	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
BstMWI	GCNNNNNNNGC	5 cut(s)	384, 505, 731, 1118, 1992
BstNI	CCWGG	3 cut(s)	83, 1340, 1659
BstNSI	RCATGY	4 cut(s)	673, 703, 1521, 1861
BstSCI	CCNGG	4 cut(s)	81, 1338, 1657, 1849
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	2 cut(s)	59, 114
BstUI	CGCG	3 cut(s)	53, 78, 1037
BstV1I	GCAGC	4 cut(s)	678, 1183, 1616, 1979
BstV2I	GAAGAC	2 cut(s)	85, 1299
BstX2I	RGATCY	3 cut(s)	289, 478, 1947
BstYI	RGATCY	3 cut(s)	289, 478, 1947
Bsu36I	CCTNAGG	1 cut(s)	1680
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	6 cut(s)	47, 57, 997, 1087, 1378, 1761
BtgI	CCRYGG	4 cut(s)	382, 527, 1530, 1916
BtgZI	GCGATG	1 cut(s)	1923
BtrI	CACGTC	3 cut(s)	1179, 1252, 1586
BtsCI	GGATG	6 cut(s)	557, 880, 979, 983, 1304, 1543
BtsI	GCAGTG	1 cut(s)	1773
BtsIMutI	CAGTG	9 cut(s)	414, 431, 931, 967, 1098, 1184, 1564, 1575, 1773
BveI	ACCTGC	2 cut(s)	340, 1307
Cac8I	GCNNGC	6 cut(s)	49, 55, 447, 671, 701, 1990
CaiI	CAGNNNCTG	2 cut(s)	154, 1607
CfoI	GCGC	2 cut(s)	53, 1988
Cfr13I	GGNCC	4 cut(s)	55, 56, 1086, 1562
CseI	GACGC	5 cut(s)	67, 120, 451, 1026, 1696
Csp6I	GTAC	4 cut(s)	558, 1043, 1473, 1699
CviQI	GTAC	4 cut(s)	558, 1043, 1473, 1699
DdeI	CTNAG	9 cut(s)	228, 459, 608, 1187, 1284, 1311, 1464, 1608, 1680
DpnI	GATC	8 cut(s)	24, 291, 306, 480, 686, 1256, 1797, 1949
DpnII	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
DraIII	CACNNNGTG	1 cut(s)	1190
DriI	GACNNNNNGTC	1 cut(s)	1918
EaeI	YGGCCR	1 cut(s)	1759
Eam1105I	GACNNNNNGTC	1 cut(s)	1918
EciI	GGCGGA	1 cut(s)	1705
Eco130I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1277, 1530, 1731
Eco147I	AGGCCT	2 cut(s)	47, 997
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	1562
Eco57I	CTGAAG	2 cut(s)	1221, 1599
Eco81I	CCTNAGG	1 cut(s)	1680
Eco88I	CYCGRG	2 cut(s)	688, 881
EcoNI	CCTNNNNNAGG	1 cut(s)	1634
EcoO109I	RGGNCCY	1 cut(s)	1086
EcoRI	GAATTC	1 cut(s)	1150
EcoRII	CCWGG	3 cut(s)	81, 1338, 1657
EcoT14I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1277, 1530, 1731
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1277, 1530, 1731
Esp3I	CGTCTC	1 cut(s)	1679
FaqI	GGGAC	3 cut(s)	1153, 1851, 2044
FauI	CCCGC	2 cut(s)	46, 380
FbaI	TGATCA	2 cut(s)	1254, 1795
Fnu4HI	GCNGC	5 cut(s)	19, 667, 1197, 1605, 1993
FokI	GGATG	6 cut(s)	564, 887, 970, 986, 1311, 1530
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	19, 667, 1197, 1605, 1993
FspBI	CTAG	5 cut(s)	62, 297, 1476, 1506, 2015
GlaI	GCGC	2 cut(s)	52, 1987
GluI	GCNGC	5 cut(s)	19, 667, 1197, 1605, 1993
GsaI	CCCAGC	2 cut(s)	591, 1112
GsuI	CTGGAG	2 cut(s)	146, 1835
HaeIII	GGCC	6 cut(s)	47, 57, 997, 1087, 1378, 1761
HapII	CCGG	3 cut(s)	32, 403, 1851
HgaI	GACGC	5 cut(s)	67, 120, 451, 1026, 1696
HhaI	GCGC	2 cut(s)	53, 1988
Hin1I	GRCGYC	2 cut(s)	131, 646
Hin6I	GCGC	2 cut(s)	51, 1986
HinP1I	GCGC	2 cut(s)	51, 1986
HincII	GTYRAC	6 cut(s)	135, 211, 524, 659, 823, 1182
HindII	GTYRAC	6 cut(s)	135, 211, 524, 659, 823, 1182
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	32, 403, 1851
HphI	GGTGA	5 cut(s)	559, 694, 1084, 1668, 1951
HpyCH4III	ACNGT	4 cut(s)	1167, 1665, 1703, 2035
HpyCH4IV	ACGT	8 cut(s)	213, 631, 646, 705, 1178, 1251, 1585, 1712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	384, 505, 731, 1118, 1992
HpyF3I	CTNAG	9 cut(s)	228, 459, 608, 1187, 1284, 1311, 1464, 1608, 1680
HpySE526I	ACGT	8 cut(s)	213, 631, 646, 705, 1178, 1251, 1585, 1712
Hsp92I	GRCGYC	2 cut(s)	131, 646
HspAI	GCGC	2 cut(s)	51, 1986
Kpn2I	TCCGGA	2 cut(s)	31, 402
Ksp22I	TGATCA	2 cut(s)	1254, 1795
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
LmnI	GCTCC	2 cut(s)	34, 883
Lsp1109I	GCAGC	4 cut(s)	678, 1183, 1616, 1979
LweI	GCATC	6 cut(s)	734, 865, 992, 1108, 1243, 1887
MaeI	CTAG	5 cut(s)	62, 297, 1476, 1506, 2015
MaeII	ACGT	8 cut(s)	213, 631, 646, 705, 1178, 1251, 1585, 1712
MaeIII	GTNAC	9 cut(s)	214, 488, 565, 627, 954, 1592, 1853, 1931, 2010
MalI	GATC	8 cut(s)	24, 291, 306, 480, 686, 1256, 1797, 1949
MboI	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
MboII	GAAGA	9 cut(s)	85, 173, 202, 473, 929, 1087, 1299, 1468, 1987
MflI	RGATCY	3 cut(s)	289, 478, 1947
MhlI	GDGCHC	2 cut(s)	59, 114
MluCI	AATT	7 cut(s)	267, 464, 830, 1150, 1485, 1670, 1866
MlyI	GAGTC	7 cut(s)	99, 700, 986, 1276, 1421, 1619, 1972
MmeI	TCCRAC	5 cut(s)	616, 820, 1764, 1902, 1940
MroI	TCCGGA	2 cut(s)	31, 402
MroXI	GAANNNNTTC	2 cut(s)	423, 892
MseI	TTAA	7 cut(s)	210, 266, 359, 504, 581, 960, 1833
MslI	CAYNNNNRTG	1 cut(s)	972
MspA1I	CMGCKG	2 cut(s)	1067, 1607
MspI	CCGG	3 cut(s)	32, 403, 1851
MspR9I	CCNGG	4 cut(s)	83, 1340, 1659, 1851
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	3 cut(s)	83, 1340, 1659
MvnI	CGCG	3 cut(s)	53, 78, 1037
MwoI	GCNNNNNNNGC	5 cut(s)	384, 505, 731, 1118, 1992
NciI	CCSGG	1 cut(s)	1851
NcoI	CCATGG	2 cut(s)	382, 1530
NdeII	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
NlaIV	GGNNCC	5 cut(s)	57, 291, 1088, 1337, 1573
NmeAIII	GCCGAG	2 cut(s)	227, 1787
NmuCI	GTSAC	4 cut(s)	565, 954, 1931, 2010
NspI	RCATGY	4 cut(s)	673, 703, 1521, 1861
PaeI	GCATGC	2 cut(s)	673, 703
PaeR7I	CTCGAG	1 cut(s)	688
PaqCI	CACCTGC	1 cut(s)	1307
PceI	AGGCCT	2 cut(s)	47, 997
PciI	ACATGT	1 cut(s)	1857
PcsI	WCGNNNNNNNCGW	2 cut(s)	652, 686
PctI	GAATGC	1 cut(s)	425
PdmI	GAANNNNTTC	2 cut(s)	423, 892
PfeI	GAWTC	7 cut(s)	7, 157, 166, 193, 593, 941, 1843
PflFI	GACNNNGTC	1 cut(s)	1165
PflMI	CCANNNNNTGG	1 cut(s)	1559
PfoI	TCCNGGA	2 cut(s)	81, 1338
PkrI	GCNGC	5 cut(s)	20, 668, 1198, 1606, 1994
PleI	GAGTC	7 cut(s)	98, 699, 985, 1276, 1421, 1618, 1971
PpsI	GAGTC	7 cut(s)	98, 699, 985, 1276, 1421, 1618, 1971
Ppu21I	YACGTR	2 cut(s)	632, 706
PscI	ACATGT	1 cut(s)	1857
PsiI	TTATAA	1 cut(s)	768
Psp1406I	AACGTT	1 cut(s)	213
Psp6I	CCWGG	3 cut(s)	81, 1338, 1657
PspFI	CCCAGC	2 cut(s)	587, 1108
PspGI	CCWGG	3 cut(s)	81, 1338, 1657
PspN4I	GGNNCC	5 cut(s)	57, 291, 1088, 1337, 1573
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	4 cut(s)	55, 56, 1086, 1562
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	2 cut(s)	154, 1607
PsuI	RGATCY	3 cut(s)	289, 478, 1947
PsyI	GACNNNGTC	1 cut(s)	1165
PvuII	CAGCTG	2 cut(s)	1067, 1607
RsaI	GTAC	4 cut(s)	559, 1044, 1474, 1700
RsaNI	GTAC	4 cut(s)	558, 1043, 1473, 1699
RseI	CAYNNNNRTG	1 cut(s)	972
SaqAI	TTAA	7 cut(s)	210, 266, 359, 504, 581, 960, 1833
SatI	GCNGC	5 cut(s)	19, 667, 1197, 1605, 1993
Sau3AI	GATC	8 cut(s)	22, 289, 304, 478, 684, 1254, 1795, 1947
Sau96I	GGNCC	4 cut(s)	55, 56, 1086, 1562
ScaI	AGTACT	2 cut(s)	559, 1044
SchI	GAGTC	7 cut(s)	99, 700, 986, 1276, 1421, 1619, 1972
ScrFI	CCNGG	4 cut(s)	83, 1340, 1659, 1851
SduI	GDGCHC	2 cut(s)	59, 114
SfaNI	GCATC	6 cut(s)	734, 865, 992, 1108, 1243, 1887
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	688
SinI	GGWCC	1 cut(s)	1562
SlaI	CTCGAG	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	972
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
SpeI	ACTAGT	4 cut(s)	61, 296, 1475, 1505
SphI	GCATGC	2 cut(s)	673, 703
Sse9I	AATT	7 cut(s)	267, 464, 830, 1150, 1485, 1670, 1866
SseBI	AGGCCT	2 cut(s)	47, 997
SsiI	CCGC	7 cut(s)	18, 53, 170, 387, 952, 1328, 1716
SspMI	CTAG	5 cut(s)	62, 297, 1476, 1506, 2015
StuI	AGGCCT	2 cut(s)	47, 997
StyD4I	CCNGG	4 cut(s)	81, 1338, 1657, 1849
StyI	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1277, 1530, 1731
TaaI	ACNGT	4 cut(s)	1167, 1665, 1703, 2035
TaiI	ACGT	8 cut(s)	216, 634, 649, 708, 1181, 1254, 1588, 1715
TaqI	TCGA	4 cut(s)	66, 188, 689, 2022
TasI	AATT	7 cut(s)	267, 464, 830, 1150, 1485, 1670, 1866
TatI	WGTACW	3 cut(s)	557, 1042, 1698
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	7 cut(s)	7, 157, 166, 193, 593, 941, 1843
Tru1I	TTAA	7 cut(s)	210, 266, 359, 504, 581, 960, 1833
Tru9I	TTAA	7 cut(s)	210, 266, 359, 504, 581, 960, 1833
TscAI	CASTG	9 cut(s)	421, 438, 938, 974, 1105, 1191, 1564, 1582, 1773
TseFI	GTSAC	4 cut(s)	565, 954, 1931, 2010
TseI	GCWGC	4 cut(s)	666, 1196, 1604, 1992
Tsp45I	GTSAC	4 cut(s)	565, 954, 1931, 2010
TspDTI	ATGAA	4 cut(s)	473, 778, 1824, 1899
TspGWI	ACGGA	2 cut(s)	302, 544
TspRI	CASTG	9 cut(s)	421, 438, 938, 974, 1105, 1191, 1564, 1582, 1773
Tth111I	GACNNNGTC	1 cut(s)	1165
Van91I	CCANNNNNTGG	1 cut(s)	1559
VpaK11BI	GGWCC	1 cut(s)	1562
XagI	CCTNNNNNAGG	1 cut(s)	1634
XapI	RAATTY	3 cut(s)	830, 1150, 1485
XceI	RCATGY	4 cut(s)	673, 703, 1521, 1861
XhoI	CTCGAG	1 cut(s)	688
XmnI	GAANNNNTTC	2 cut(s)	423, 892
XspI	CTAG	5 cut(s)	62, 297, 1476, 1506, 2015
ZraI	GACGTC	1 cut(s)	647
ZrmI	AGTACT	2 cut(s)	559, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.