Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009840

Physical Location & Seq

Genomic Coordinates Forward (+)

15744833 .. 15748652

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10410.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGGCGAATCGGGAAGGCGGCGATCTGTATCCGGAGCTATGGAAGGCCTGCGCGGGCCCACTCGTCGATGTGCCTCGCGTCCAGGAGAGAGTACTCTACTTTCCACAGGGCCACATGGAACAATTGGAGGCGTCAACGCCAACAAATCAGGAACTGAATCAAGGGATTCCGCAGTTCAATCTTCCCTCGAAGATTCTTTGCCGCGTCGTTAACGTTAACCTACTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATTACTTTAATTCCAGATGTAAATCAAACGGAGCCTACTAGTCCTGATCCATGCCTTACTGAACCTCAAAGACCTGCAGTTCACTCATTCTGCAAAGTTTTAACTGCCTCTGATACAAGCACCCATGGCGGGTTTTCTGTTCTTCGGAAACATGCCACTGAATGCCTTCCTCCACTGGACATGACCCAGGCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGTTATGAGTGGCGATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCACTTGCTTACAACAGGGTGGAGTACTTTTGTCACCTCCAAGAGATTAAGTGCTGGAGATTCCTTTGTATTTCTCAGAGGGGTCAACGGGGAGTTACGGGTTGGAGTTAGACGTCTTGCTCGTCAACAGAGCAGCATGCCATCATCTGTGATCTCGAGTCAAAGCATGCATGTAGGGGTGCTCGCAACTGCATCTCATGCACTTGCAACCCAAACTCTTTTTGTCGTCTATTATAAACCAAGGACTAGTCAGTTCATTATTGGTTTGAACAAGTATTTGGAGGCTGTCAACAATAAGTTTTCAGTCGGAATTAGATTCAAAATGAGGTTCGAGGGGGAGGATGTTCCTGAGAGAAGGTTTTCAGGCACAATTGTTGGTCTTGAAGATATATCTCCTCACTGGGCAGATTCAAAATGGCGATCACTTAAAGTTCACTGGGACGAATCTGCATCCATTCCAAGGCCTGACAAGGTATCGCCTTGGGAGATAGAACCTTTTGTGGCGTCTGTACCTCCAAGCCTTCCTCAACCAGCTGTGGTGAAGAACAAAAGGCCTCGACCACCCACTGAAATCCCAACTCTTGATGCAATGAGTTCAACAGCGTCAGCTATGTGGAATTCTGGGCTGTCACAGTCCCATGACAAGTCACCACTGAGTGTCTCTGCTGAAGGCAAAAGAAGTGAAAGTCATGTTGGATGGCCACACCAACAGGCAGATGTGATCAGCAACAACTCTGTTCCAAGGACTCAGACTGATGTGGGATGGTTCTCTTCTCAGGCAGGTGGTTCTCCGCACATGTTTCAGGAAACAATGGAGGATAGTAAAAGTGTTTCTGCTTGGTCTGTTTTCTCTGGATATTCGACTCCAAACTCATCAAAGCTGAAAAATGACTCAATGTTTGACCATGTTGAAAAAGAGAAGAAAACTGAGACAGCTACTAGTTGTCGAATTTTCGGAATAGACTTTACAAATCATTCTACAAGCTCCCCTGCCATGGAGAAGGGACCTCTGCAACCAATCAGTGGATCTACTGGAACCCCTGAAGGACGTGTTAGTAACATGTTAGCAGCCGAGTCAGACCAGAAATCTGACCTTTCAAAGACTTCTAAAGAAGGCAAACCTGGACAGCTGCAAGTATCACCGAAGGAAACACAGAGCAAACATAGTTGCTCTACGTCCGCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGATAGCTGTTGGCCGAGCAGTGGACTTGACGACATTGGAAGGATATGATCAGCTTATAGATGAACTGGAGGAGATGTTTGACATCAAGGGACAGATTCGCCACAGTAACATGTGGCAAATTGTCTTTACTGATAATGAAGGAGATATGATGCTTATGGGTGATGACCCGTGGTCGGAATTCTGTGACATGGTGAAAAGAATCTTTATATGTTCAAGTCAAGACGTGAAGAAAATTAGCGCCGGCTGCAAACTTCCAATGTCGTCACAAGAAGTTGAAGGGGGACCGGTAATAAGCTCGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

683

Amino Acids

75.49

Weight (kDa)

6.2

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23980 AT4G23980
fragaria_vesca	FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690
malus_domestica	MD06G1111100.v1.1 MD14G1131900.v1.1
prunus_persica	Prupe.5G123400_v2.0.a1
pyrus_communis	pycom06g10410
rosa_chinensis	RchiOBHm_Chr7g0186081
rosa_laevigata	RLG00000004866
rosa_multiflora	Rmu_sc0000194.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268450
rosa_rugosa	Rorug06G0472100
rosa_samantha	Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500
rosa_wichuraiana	Rw7G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AarI	CACCTGC	1 cut(s)	1304
AatII	GACGTC	1 cut(s)	649
Acc36I	ACCTGC	2 cut(s)	340, 1304
AccB7I	CCANNNNNTGG	1 cut(s)	1556
AccII	CGCG	3 cut(s)	53, 78, 204
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	7 cut(s)	18, 53, 170, 202, 387, 1325, 1713
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	3 cut(s)	299, 486, 1567
AcoI	YGGCCR	2 cut(s)	1232, 1756
AcsI	RAATTY	3 cut(s)	1150, 1482, 1922
AcuI	CTGAAG	2 cut(s)	1221, 1596
AcyI	GRCGYC	3 cut(s)	131, 646, 1037
AdeI	CACNNNGTG	1 cut(s)	1190
AfaI	GTAC	3 cut(s)	93, 559, 1044
AfiI	CCNNNNNNNGG	7 cut(s)	387, 460, 993, 1528, 1556, 1765, 1918
AflIII	ACRYGT	4 cut(s)	1329, 1582, 1593, 1854
AgeI	ACCGGT	1 cut(s)	2029
AhdI	GACNNNNNGTC	1 cut(s)	1915
AhlI	ACTAGT	3 cut(s)	296, 779, 1472
AjiI	CACGTC	2 cut(s)	1583, 1969
AjnI	CCWGG	3 cut(s)	81, 444, 1654
AjuI	GAANNNNNNNTTGG	4 cut(s)	794, 826, 1209, 1241
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	1198, 1457
AlwI	GGATC	3 cut(s)	299, 486, 1567
AlwNI	CAGNNNCTG	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	688
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	7 cut(s)	45, 55, 109, 995, 1085, 1232, 1756
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	4 cut(s)	666, 1601, 1663, 1989
ApoI	RAATTY	3 cut(s)	1150, 1482, 1922
ArsI	GACNNNNNNTTYG	2 cut(s)	1415, 1447
AsiGI	ACCGGT	1 cut(s)	2029
Asp700I	GAANNNNTTC	2 cut(s)	423, 892
AspLEI	GCGC	2 cut(s)	53, 1985
AspS9I	GGNCC	5 cut(s)	55, 56, 109, 1538, 2027
AsuHPI	GGTGA	6 cut(s)	559, 1084, 1173, 1665, 1916, 1948
AvaI	CYCGRG	1 cut(s)	688
AvaII	GGWCC	2 cut(s)	1538, 2027
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	1234
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	4 cut(s)	678, 1613, 1650, 1976
BccI	CCATC	3 cut(s)	682, 1224, 1290
BciT130I	CCWGG	3 cut(s)	83, 446, 1656
BciVI	GTATCC	1 cut(s)	39
BclI	TGATCA	2 cut(s)	1254, 1792
BcoDI	GTCTC	2 cut(s)	1198, 1457
BcuI	ACTAGT	3 cut(s)	296, 779, 1472
BfaI	CTAG	3 cut(s)	297, 780, 1473
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	1986
BfuAI	ACCTGC	2 cut(s)	340, 1304
BfuI	GTATCC	1 cut(s)	39
BisI	GCNGC	6 cut(s)	19, 202, 667, 1602, 1664, 1990
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	6 cut(s)	20, 203, 668, 1603, 1665, 1991
BmcAI	AGTACT	2 cut(s)	93, 559
Bme1390I	CCNGG	3 cut(s)	83, 446, 1656
Bme18I	GGWCC	2 cut(s)	1538, 2027
BmeRI	GACNNNNNGTC	1 cut(s)	1915
BmeT110I	CYCGRG	1 cut(s)	688
BmgBI	CACGTC	2 cut(s)	1583, 1969
BmgT120I	GGNCC	5 cut(s)	55, 56, 109, 1538, 2027
BmiI	GGNNCC	5 cut(s)	57, 291, 1539, 1570, 2028
BmrFI	CCNGG	3 cut(s)	83, 446, 1656
BmrI	ACTGGG	2 cut(s)	943, 979
BmsI	GCATC	4 cut(s)	734, 992, 1108, 1884
BmuI	ACTGGG	2 cut(s)	943, 979
BpmI	CTGGAG	2 cut(s)	609, 1832
Bpu1102I	GCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	2 cut(s)	27, 279
BsaHI	GRCGYC	3 cut(s)	131, 646, 1037
BsaWI	WCCGGW	2 cut(s)	31, 2029
BsaXI	ACNNNNNCTCC	2 cut(s)	1805, 1835
Bsc4I	CCNNNNNNNGG	7 cut(s)	387, 460, 993, 1528, 1556, 1765, 1918
Bse118I	RCCGGY	2 cut(s)	1985, 2029
Bse1I	ACTGG	6 cut(s)	228, 438, 938, 974, 1570, 1815
Bse3DI	GCAATG	1 cut(s)	1128
Bse8I	GATNNNNATC	2 cut(s)	27, 279
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	3 cut(s)	83, 446, 1656
BseGI	GGATG	4 cut(s)	880, 983, 1235, 1301
BseJI	GATNNNNATC	2 cut(s)	27, 279
BseLI	CCNNNNNNNGG	7 cut(s)	387, 460, 993, 1528, 1556, 1765, 1918
BseMI	GCAATG	1 cut(s)	1128
BseMII	CTCAG	8 cut(s)	219, 473, 622, 873, 1178, 1295, 1322, 1452
BseNI	ACTGG	6 cut(s)	228, 438, 938, 974, 1570, 1815
BseRI	GAGGAG	2 cut(s)	918, 1829
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	678, 1613, 1650, 1976
Bsh1236I	CGCG	3 cut(s)	53, 78, 204
BshFI	GGCC	7 cut(s)	47, 57, 111, 997, 1087, 1234, 1758
BshTI	ACCGGT	1 cut(s)	2029
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	32, 1986, 2030
BslFI	GGGAC	5 cut(s)	986, 1153, 1551, 1848, 2040
BslI	CCNNNNNNNGG	7 cut(s)	387, 460, 993, 1528, 1556, 1765, 1918
BsmAI	GTCTC	2 cut(s)	1198, 1457
BsmFI	GGGAC	5 cut(s)	986, 1153, 1551, 1848, 2040
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	7 cut(s)	47, 57, 111, 997, 1087, 1234, 1758
BsoBI	CYCGRG	1 cut(s)	688
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	59, 717
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp19I	CCATGG	2 cut(s)	382, 1527
BspACI	CCGC	7 cut(s)	18, 53, 170, 202, 387, 1325, 1713
BspANI	GGCC	7 cut(s)	47, 57, 111, 997, 1087, 1234, 1758
BspCNI	CTCAG	8 cut(s)	220, 472, 621, 874, 1179, 1294, 1321, 1453
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	3 cut(s)	53, 78, 204
BspLI	GGNNCC	5 cut(s)	57, 291, 1539, 1570, 2028
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	340, 1304
BspPI	GGATC	3 cut(s)	299, 486, 1567
BsrDI	GCAATG	1 cut(s)	1128
BsrFI	RCCGGY	2 cut(s)	1985, 2029
BsrI	ACTGG	6 cut(s)	228, 438, 938, 974, 1570, 1815
BssAI	RCCGGY	2 cut(s)	1985, 2029
BssMI	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
BssNI	GRCGYC	3 cut(s)	131, 646, 1037
BssT1I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1274, 1527, 1728
Bst2UI	CCWGG	3 cut(s)	83, 446, 1656
Bst4CI	ACNGT	2 cut(s)	1167, 1850
Bst6I	CTCTTC	1 cut(s)	1309
BstACI	GRCGYC	3 cut(s)	131, 646, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	6 cut(s)	49, 55, 671, 701, 717, 1987
BstDEI	CTNAG	8 cut(s)	228, 459, 608, 882, 1187, 1281, 1308, 1461
BstDSI	CCRYGG	4 cut(s)	382, 527, 1527, 1913
BstF5I	GGATG	4 cut(s)	880, 983, 1235, 1301
BstFNI	CGCG	3 cut(s)	53, 78, 204
BstH2I	RGCGCY	1 cut(s)	1986
BstHHI	GCGC	2 cut(s)	53, 1985
BstKTI	GATC	8 cut(s)	25, 307, 481, 687, 956, 1257, 1562, 1795
BstMAI	GTCTC	2 cut(s)	1198, 1457
BstMBI	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
BstMWI	GCNNNNNNNGC	4 cut(s)	384, 505, 731, 1989
BstNI	CCWGG	3 cut(s)	83, 446, 1656
BstNSI	RCATGY	7 cut(s)	413, 673, 703, 707, 1333, 1597, 1858
BstSCI	CCNGG	3 cut(s)	81, 444, 1654
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	3 cut(s)	53, 78, 204
BstV1I	GCAGC	4 cut(s)	678, 1613, 1650, 1976
BstX2I	RGATCY	2 cut(s)	478, 1559
BstYI	RGATCY	2 cut(s)	478, 1559
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	7 cut(s)	47, 57, 111, 997, 1087, 1234, 1758
BtgI	CCRYGG	4 cut(s)	382, 527, 1527, 1913
BtrI	CACGTC	2 cut(s)	1583, 1969
BtsCI	GGATG	4 cut(s)	880, 983, 1235, 1301
BtsI	GCAGTG	1 cut(s)	1770
BtsIMutI	CAGTG	8 cut(s)	414, 431, 931, 967, 1098, 1184, 1561, 1770
BveI	ACCTGC	2 cut(s)	340, 1304
Cac8I	GCNNGC	6 cut(s)	49, 55, 671, 701, 717, 1987
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	2 cut(s)	53, 1985
Cfr10I	RCCGGY	2 cut(s)	1985, 2029
Cfr13I	GGNCC	5 cut(s)	55, 56, 109, 1538, 2027
CseI	GACGC	5 cut(s)	67, 120, 193, 1026, 1125
Csp6I	GTAC	3 cut(s)	92, 558, 1043
CspAI	ACCGGT	1 cut(s)	2029
CviQI	GTAC	3 cut(s)	92, 558, 1043
DdeI	CTNAG	8 cut(s)	228, 459, 608, 882, 1187, 1281, 1308, 1461
DpnI	GATC	8 cut(s)	24, 306, 480, 686, 955, 1256, 1561, 1794
DpnII	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
DraIII	CACNNNGTG	1 cut(s)	1190
DriI	GACNNNNNGTC	1 cut(s)	1915
EaeI	YGGCCR	2 cut(s)	1232, 1756
Eam1104I	CTCTTC	1 cut(s)	1309
Eam1105I	GACNNNNNGTC	1 cut(s)	1915
EarI	CTCTTC	1 cut(s)	1309
EciI	GGCGGA	1 cut(s)	1702
Eco130I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1274, 1527, 1728
Eco147I	AGGCCT	3 cut(s)	47, 997, 1087
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	1538, 2027
Eco57I	CTGAAG	2 cut(s)	1221, 1596
Eco88I	CYCGRG	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	1538
EcoRI	GAATTC	2 cut(s)	1150, 1922
EcoRII	CCWGG	3 cut(s)	81, 444, 1654
EcoT14I	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1274, 1527, 1728
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1274, 1527, 1728
FaqI	GGGAC	5 cut(s)	986, 1153, 1551, 1848, 2040
FauI	CCCGC	2 cut(s)	46, 380
FbaI	TGATCA	2 cut(s)	1254, 1792
Fnu4HI	GCNGC	6 cut(s)	19, 202, 667, 1602, 1664, 1990
FokI	GGATG	4 cut(s)	887, 970, 1242, 1308
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	6 cut(s)	19, 202, 667, 1602, 1664, 1990
FspBI	CTAG	3 cut(s)	297, 780, 1473
GlaI	GCGC	2 cut(s)	52, 1984
GluI	GCNGC	6 cut(s)	19, 202, 667, 1602, 1664, 1990
GsuI	CTGGAG	2 cut(s)	609, 1832
HaeII	RGCGCY	1 cut(s)	1986
HaeIII	GGCC	7 cut(s)	47, 57, 111, 997, 1087, 1234, 1758
HapII	CCGG	3 cut(s)	32, 1986, 2030
HgaI	GACGC	5 cut(s)	67, 120, 193, 1026, 1125
HhaI	GCGC	2 cut(s)	53, 1985
Hin1I	GRCGYC	3 cut(s)	131, 646, 1037
Hin6I	GCGC	2 cut(s)	51, 1983
HinP1I	GCGC	2 cut(s)	51, 1983
HincII	GTYRAC	7 cut(s)	135, 211, 217, 524, 619, 659, 823
HindII	GTYRAC	7 cut(s)	135, 211, 217, 524, 619, 659, 823
HpaI	GTTAAC	2 cut(s)	211, 217
HpaII	CCGG	3 cut(s)	32, 1986, 2030
HphI	GGTGA	6 cut(s)	559, 1084, 1173, 1665, 1916, 1948
Hpy99I	CGWCG	2 cut(s)	68, 209
HpyCH4III	ACNGT	2 cut(s)	1167, 1850
HpyCH4IV	ACGT	5 cut(s)	213, 646, 1582, 1709, 1968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	384, 505, 731, 1989
HpyF3I	CTNAG	8 cut(s)	228, 459, 608, 882, 1187, 1281, 1308, 1461
HpySE526I	ACGT	5 cut(s)	213, 646, 1582, 1709, 1968
Hsp92I	GRCGYC	3 cut(s)	131, 646, 1037
HspAI	GCGC	2 cut(s)	51, 1983
Kpn2I	TCCGGA	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	1985
KroNI	GCCGGC	1 cut(s)	1987
Ksp22I	TGATCA	2 cut(s)	1254, 1792
KspAI	GTTAAC	2 cut(s)	211, 217
Kzo9I	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
LmnI	GCTCC	3 cut(s)	34, 289, 1523
Lsp1109I	GCAGC	4 cut(s)	678, 1613, 1650, 1976
LweI	GCATC	4 cut(s)	734, 992, 1108, 1884
MaeI	CTAG	3 cut(s)	297, 780, 1473
MaeII	ACGT	5 cut(s)	213, 646, 1582, 1709, 1968
MaeIII	GTNAC	8 cut(s)	565, 627, 1161, 1179, 1589, 1850, 1928, 2007
MalI	GATC	8 cut(s)	24, 306, 480, 686, 955, 1256, 1561, 1794
MboI	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
MboII	GAAGA	9 cut(s)	173, 202, 392, 473, 929, 1087, 1296, 1465, 1984
MfeI	CAATTG	2 cut(s)	122, 903
MflI	RGATCY	2 cut(s)	478, 1559
MhlI	GDGCHC	2 cut(s)	59, 717
MlsI	TGGCCA	1 cut(s)	1234
MluNI	TGGCCA	1 cut(s)	1234
MlyI	GAGTC	5 cut(s)	700, 1273, 1390, 1418, 1616
MmeI	TCCRAC	4 cut(s)	616, 820, 1207, 1899
Mox20I	TGGCCA	1 cut(s)	1234
Mph1103I	ATGCAT	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	1985
MroXI	GAANNNNTTC	2 cut(s)	423, 892
MscI	TGGCCA	1 cut(s)	1234
MseI	TTAA	7 cut(s)	210, 216, 266, 359, 504, 581, 960
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	1234
MspA1I	CMGCKG	2 cut(s)	1067, 1663
MspI	CCGG	3 cut(s)	32, 1986, 2030
MspR9I	CCNGG	3 cut(s)	83, 446, 1656
MunI	CAATTG	2 cut(s)	122, 903
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	3 cut(s)	83, 446, 1656
MvnI	CGCG	3 cut(s)	53, 78, 204
MwoI	GCNNNNNNNGC	4 cut(s)	384, 505, 731, 1989
NaeI	GCCGGC	1 cut(s)	1987
NcoI	CCATGG	2 cut(s)	382, 1527
NdeII	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
NgoMIV	GCCGGC	1 cut(s)	1985
NlaIV	GGNNCC	5 cut(s)	57, 291, 1539, 1570, 2028
NmeAIII	GCCGAG	2 cut(s)	1630, 1784
NmuCI	GTSAC	5 cut(s)	565, 1161, 1179, 1928, 2007
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	7 cut(s)	413, 673, 703, 707, 1333, 1597, 1858
PaeI	GCATGC	2 cut(s)	673, 703
PaeR7I	CTCGAG	1 cut(s)	688
PaqCI	CACCTGC	1 cut(s)	1304
PceI	AGGCCT	3 cut(s)	47, 997, 1087
PciI	ACATGT	3 cut(s)	1329, 1593, 1854
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PctI	GAATGC	1 cut(s)	425
PdiI	GCCGGC	1 cut(s)	1987
PdmI	GAANNNNTTC	2 cut(s)	423, 892
PflMI	CCANNNNNTGG	1 cut(s)	1556
PfoI	TCCNGGA	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	2029
PkrI	GCNGC	6 cut(s)	20, 203, 668, 1603, 1665, 1991
PleI	GAGTC	5 cut(s)	699, 1273, 1390, 1418, 1615
PpsI	GAGTC	5 cut(s)	699, 1273, 1390, 1418, 1615
PpuMI	RGGWCCY	1 cut(s)	1538
PscI	ACATGT	3 cut(s)	1329, 1593, 1854
PsiI	TTATAA	1 cut(s)	768
Psp1406I	AACGTT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	1538
Psp6I	CCWGG	3 cut(s)	81, 444, 1654
PspGI	CCWGG	3 cut(s)	81, 444, 1654
PspN4I	GGNNCC	5 cut(s)	57, 291, 1539, 1570, 2028
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	5 cut(s)	55, 56, 109, 1538, 2027
PspPPI	RGGWCCY	1 cut(s)	1538
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	2 cut(s)	478, 1559
PvuII	CAGCTG	2 cut(s)	1067, 1663
RsaI	GTAC	3 cut(s)	93, 559, 1044
RsaNI	GTAC	3 cut(s)	92, 558, 1043
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	7 cut(s)	210, 216, 266, 359, 504, 581, 960
SatI	GCNGC	6 cut(s)	19, 202, 667, 1602, 1664, 1990
Sau3AI	GATC	8 cut(s)	22, 304, 478, 684, 953, 1254, 1559, 1792
Sau96I	GGNCC	5 cut(s)	55, 56, 109, 1538, 2027
ScaI	AGTACT	2 cut(s)	93, 559
SchI	GAGTC	5 cut(s)	700, 1273, 1390, 1418, 1616
ScrFI	CCNGG	3 cut(s)	83, 446, 1656
SduI	GDGCHC	2 cut(s)	59, 717
SfaNI	GCATC	4 cut(s)	734, 992, 1108, 1884
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	688
SinI	GGWCC	2 cut(s)	1538, 2027
SlaI	CTCGAG	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
SpeI	ACTAGT	3 cut(s)	296, 779, 1472
SphI	GCATGC	2 cut(s)	673, 703
SseBI	AGGCCT	3 cut(s)	47, 997, 1087
SsiI	CCGC	7 cut(s)	18, 53, 170, 202, 387, 1325, 1713
SspMI	CTAG	3 cut(s)	297, 780, 1473
StuI	AGGCCT	3 cut(s)	47, 997, 1087
StyD4I	CCNGG	3 cut(s)	81, 444, 1654
StyI	CCWWGG	8 cut(s)	382, 474, 773, 992, 1013, 1274, 1527, 1728
TaaI	ACNGT	2 cut(s)	1167, 1850
TaiI	ACGT	5 cut(s)	216, 649, 1585, 1712, 1971
TaqI	TCGA	7 cut(s)	66, 188, 689, 864, 1090, 1394, 1480
TatI	WGTACW	2 cut(s)	91, 557
TauI	GCSGC	2 cut(s)	21, 204
Tru1I	TTAA	7 cut(s)	210, 216, 266, 359, 504, 581, 960
Tru9I	TTAA	7 cut(s)	210, 216, 266, 359, 504, 581, 960
TscAI	CASTG	8 cut(s)	421, 438, 938, 974, 1105, 1191, 1561, 1770
TseFI	GTSAC	5 cut(s)	565, 1161, 1179, 1928, 2007
TseI	GCWGC	4 cut(s)	666, 1601, 1663, 1989
Tsp45I	GTSAC	5 cut(s)	565, 1161, 1179, 1928, 2007
TspDTI	ATGAA	4 cut(s)	473, 778, 1821, 1896
TspGWI	ACGGA	2 cut(s)	302, 544
TspRI	CASTG	8 cut(s)	421, 438, 938, 974, 1105, 1191, 1561, 1770
Van91I	CCANNNNNTGG	1 cut(s)	1556
VpaK11BI	GGWCC	2 cut(s)	1538, 2027
XapI	RAATTY	3 cut(s)	1150, 1482, 1922
XceI	RCATGY	7 cut(s)	413, 673, 703, 707, 1333, 1597, 1858
XhoI	CTCGAG	1 cut(s)	688
XmnI	GAANNNNTTC	2 cut(s)	423, 892
XspI	CTAG	3 cut(s)	297, 780, 1473
ZraI	GACGTC	1 cut(s)	647
ZrmI	AGTACT	2 cut(s)	93, 559
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.