Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009840

Physical Location & Seq

Genomic Coordinates Forward (+)

5647372 .. 5652342

Gene Structure 4971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGCACGTTCAGCTACTGGCTGAACAAGAAACAGATGAGGTTTATGCGCAAATTACTTTAATTCCTGAAGCAAATCAAACCACCGAACCTACTAGTCCTGATGAGTGTCCTTCCGAACCTGAAAGACCAAAGGTTTACCCATTCTGCAAGGTTCTTACTGCATCCGATACGAGTACCCATGGTGGGTTTTCTGTTCTACGCAAACACGCTACTGAATGCCTTCCTCCACTGGACAAGACTCAAGCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCACATTTTCAGAGGTTCACCACGGAGACACTTGCTTACAACAGGATGGAGTACTTTTGTTACTTCTAAGAGGTTAAGTGCCGGGGATTCCTTTGTATTTCTCAGAGGCGAAAACGGGGACTTACGTGTTGGAATTAGGCGTCTTGCTCGTCAACAGAGCAGCATGCCATCATCTGTGATTTCAAGTCAAAGCATGCATGTAGGGCTGCTTGCTACTGCATCACATGCTGTTGCAACCCAAACACTCTTTGTAGTGTATTATAAGCCAAGGACGAGTCAGTTCATTATTAGTTTGAATAAGTATTTGGAGGCTGTTAACAATAAGTTCTCGGTTGGAATGAGATTCAAGATGAGGTTTGAGGGGGAGGACGCTCCAGAGAGAAGGTTTTCAGGCACTATAATTGGTCTTGAGGATATATCTCCTCATTGGGCAGATTCAGAATGGCGATCCCTTAAAGTTCAATGGGATGAGTCTGCATCCATTCCCAGACCTGACAGGGTCTCGCCCTGGGAGATAGAATCTTATGTGGCTTCCATACCTGCGAGCCTTTCTCAATCCACTGTTTTGAAGAACAAAAGGCCTCGGCTACTCCCTGAAATCCCAGCTCCTGATACCGCGAGTTCAATAACGTGGCATGATGTGACACAATTGAGTGGTGCTGCTGAAGGCCAGAGAAGTGAAAATCATGTTTCTTTGAATCATCAGCAGGCAGACATTATCAGCATTAGCAGTTGTATCTCGAGGACTAAGACTGATGGGGGCTGGCTATCTTCACCTACGGTGGAGGATAGTAAAAGTGGTCCTGCTTGGCCACTTTTCTCTGGATATTCAACTCCAACTTCATCAAAGCCTAAAAATGACTTGATGCTGGACCATGTTGAAAAGAGGAAGAAAACTGAGACAGGTGCTAGTTGCCTAATTTTCGGTGTAGATTTTAGCAGTCATCTTAACAGCTCCCATTCAGTGGAGAAGCCACCCCCACAACCAATTATAGCATCTACTGGAGCCACTGAAGGACAAGTTAGTATCTCAGTGGAAGCCGAGTCTGACCAGAAATCTGACCTTTCGAAGGCTTCTAAAGAAAGCAAAGCTCAGTTTCAAGTATCACCGAAAGAGACACTGAGCAAGCAGAGTAGCTCTGCATCCACTAGGAGTCGCGTCAAGGTTCAAATGCAGGGAATAGCTGTTGGTCGAGCAGTGGACTTGACAATGCTGGAAGGGTATGATCAACTTATAGTTGAACTGGAGGAGATGTTTGATATCAAGGGACAGATCGGCCCACGTAACAAGTGGGAAATTGTGTTCACTGATGATGAAGGAGATATGATGCTTGCCGGTGACGACCCGTGGTTGGAATTCTGTAACATGGTGAGAAGAATCTTTATATGTTCAAGTCAGGACGTGAAGAAAATTAGTGCAGGGAGAAAACGTCTAAGTATGTCTTCACTAGAAGTTGAAGGGACAGTAACAAGTTCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

594

Amino Acids

65.8

Weight (kDa)

6.15

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	48 - 148	3e-23	B3 DNA binding domain
BRWD_AD	PF25313	177 - 275	3.7e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	195 - 275	4.3e-36	Auxin response factor ancillary domain
AUX_IAA	PF02309	472 - 521	9.5e-08	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23980 AT4G23980
fragaria_vesca	FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690
malus_domestica	MD06G1111100.v1.1 MD14G1131900.v1.1
prunus_persica	Prupe.5G123400_v2.0.a1
pyrus_communis	pycom06g10410
rosa_chinensis	RchiOBHm_Chr7g0186081
rosa_laevigata	RLG00000004866
rosa_multiflora	Rmu_sc0000194.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268450
rosa_rugosa	Rorug06G0472100
rosa_samantha	Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500
rosa_wichuraiana	Rw7G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
Acc16I	TGCGCA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	850
AccB7I	CCANNNNNTGG	1 cut(s)	1267
AccII	CGCG	2 cut(s)	920, 1461
AciI	CCGC	1 cut(s)	918
AclWI	GGATC	1 cut(s)	744
AcoI	YGGCCR	1 cut(s)	1112
AcsI	RAATTY	1 cut(s)	1658
AcuI	CTGAAG	3 cut(s)	87, 987, 1335
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	2 cut(s)	175, 355
AfiI	CCNNNNNNNGG	5 cut(s)	183, 256, 1267, 1372, 1654
AflIII	ACRYGT	1 cut(s)	427
AhlI	ACTAGT	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	1705
AjnI	CCWGG	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AloI	GAACNNNNNNTCC	2 cut(s)	1589, 1621
AluBI	AGCT	6 cut(s)	13, 908, 1257, 1394, 1440, 1487
AluI	AGCT	6 cut(s)	13, 908, 1257, 1394, 1440, 1487
Alw26I	GTCTC	4 cut(s)	322, 808, 1196, 1412
AlwI	GGATC	1 cut(s)	744
AlwNI	CAGNNNCTG	2 cut(s)	16, 911
Ama87I	CYCGRG	1 cut(s)	1042
AoxI	GGCC	4 cut(s)	881, 970, 1112, 1579
ApeKI	GCWGC	3 cut(s)	462, 508, 962
ApoI	RAATTY	1 cut(s)	1658
Asp700I	GAANNNNTTC	2 cut(s)	219, 688
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	1103, 1174, 1580
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	5 cut(s)	312, 1068, 1401, 1652, 1684
AsuII	TTCGAA	1 cut(s)	1370
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	2 cut(s)	1103, 1174
BalI	TGGCCA	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	1737
BbvI	GCAGC	3 cut(s)	474, 495, 949
BccI	CCATC	3 cut(s)	342, 478, 1052
BciT130I	CCWGG	1 cut(s)	811
BclI	TGATCA	1 cut(s)	1528
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	4 cut(s)	322, 808, 1196, 1412
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 1212, 1452, 1751
BfuAI	ACCTGC	1 cut(s)	850
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	463, 509, 963
BlsI	GCNGC	3 cut(s)	464, 510, 964
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	385, 811
Bme18I	GGWCC	2 cut(s)	1103, 1174
BmeT110I	CYCGRG	1 cut(s)	1042
BmgBI	CACGTC	1 cut(s)	1705
BmgT120I	GGNCC	3 cut(s)	1103, 1174, 1580
BmiI	GGNNCC	1 cut(s)	1309
BmrFI	CCNGG	2 cut(s)	385, 811
BmsI	GCATC	7 cut(s)	170, 530, 788, 1158, 1307, 1454, 1620
BpiI	GAAGAC	1 cut(s)	1737
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
BpmI	CTGGAG	3 cut(s)	660, 1326, 1568
Bpu14I	TTCGAA	1 cut(s)	1370
BpuEI	CTTGAG	2 cut(s)	225, 731
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	2 cut(s)	428, 1586
BsaHI	GRCGYC	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	8 cut(s)	178, 323, 384, 569, 809, 810, 884, 1649
BsaXI	ACNNNNNCTCC	4 cut(s)	1541, 1571, 1717, 1747
Bsc4I	CCNNNNNNNGG	5 cut(s)	183, 256, 1267, 1372, 1654
Bse118I	RCCGGY	1 cut(s)	1637
Bse1I	ACTGG	4 cut(s)	21, 234, 1309, 1551
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	8 cut(s)	178, 323, 384, 569, 809, 810, 884, 1649
BseGI	GGATG	5 cut(s)	161, 353, 775, 779, 1445
BseLI	CCNNNNNNNGG	5 cut(s)	183, 256, 1267, 1372, 1654
BseMII	CTCAG	6 cut(s)	269, 418, 1191, 1347, 1409, 1415
BseNI	ACTGG	4 cut(s)	21, 234, 1309, 1551
BseRI	GAGGAG	2 cut(s)	714, 1565
BseXI	GCAGC	3 cut(s)	474, 495, 949
BseYI	CCCAGC	1 cut(s)	904
BsgI	GTGCAG	1 cut(s)	1740
Bsh1236I	CGCG	2 cut(s)	920, 1461
BshFI	GGCC	4 cut(s)	883, 972, 1114, 1581
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	2 cut(s)	384, 1638
BslFI	GGGAC	3 cut(s)	434, 1584, 1777
BslI	CCNNNNNNNGG	5 cut(s)	183, 256, 1267, 1372, 1654
BsmAI	GTCTC	4 cut(s)	322, 808, 1196, 1412
BsmFI	GGGAC	3 cut(s)	434, 1584, 1777
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	883, 972, 1114, 1581
Bso31I	GGTCTC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	1042
Bsp119I	TTCGAA	1 cut(s)	1370
Bsp143I	GATC	4 cut(s)	274, 749, 1528, 1575
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	4 cut(s)	883, 972, 1114, 1581
BspCNI	CTCAG	6 cut(s)	268, 417, 1192, 1346, 1408, 1416
BspFNI	CGCG	2 cut(s)	920, 1461
BspLI	GGNNCC	1 cut(s)	1309
BspMI	ACCTGC	1 cut(s)	850
BspPI	GGATC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	1370
BspTNI	GGTCTC	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	1637
BsrI	ACTGG	4 cut(s)	21, 234, 1309, 1551
BssAI	RCCGGY	1 cut(s)	1637
BssECI	CCNNGG	8 cut(s)	178, 323, 384, 569, 809, 810, 884, 1649
BssMI	GATC	4 cut(s)	274, 749, 1528, 1575
BssNI	GRCGYC	1 cut(s)	442
BssT1I	CCWWGG	2 cut(s)	178, 569
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	865, 1084, 1768
BstACI	GRCGYC	1 cut(s)	442
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBAI	YACGTR	2 cut(s)	428, 1586
BstBI	TTCGAA	1 cut(s)	1370
BstC8I	GCNNGC	8 cut(s)	467, 497, 513, 847, 1011, 1067, 1430, 1635
BstDEI	CTNAG	9 cut(s)	255, 369, 404, 1050, 1200, 1333, 1395, 1424, 1736
BstDSI	CCRYGG	3 cut(s)	178, 323, 1649
BstENI	CCTNNNNNAGG	1 cut(s)	1370
BstF5I	GGATG	5 cut(s)	161, 353, 775, 779, 1445
BstFNI	CGCG	2 cut(s)	920, 1461
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	277, 752, 1531, 1578
BstMAI	GTCTC	4 cut(s)	322, 808, 1196, 1412
BstMBI	GATC	4 cut(s)	274, 749, 1528, 1575
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 301, 505, 527
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	4 cut(s)	469, 499, 503, 530
BstSCI	CCNGG	2 cut(s)	383, 809
BstUI	CGCG	2 cut(s)	920, 1461
BstV1I	GCAGC	3 cut(s)	474, 495, 949
BstV2I	GAAGAC	1 cut(s)	1737
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	883, 972, 1114, 1581
BtgI	CCRYGG	3 cut(s)	178, 323, 1649
BtrI	CACGTC	1 cut(s)	1705
BtsCI	GGATG	5 cut(s)	161, 353, 775, 779, 1445
BtsI	GCAGTG	1 cut(s)	1506
BtsIMutI	CAGTG	8 cut(s)	227, 861, 1272, 1311, 1341, 1421, 1506, 1608
BveI	ACCTGC	1 cut(s)	850
Cac8I	GCNNGC	8 cut(s)	467, 497, 513, 847, 1011, 1067, 1430, 1635
CaiI	CAGNNNCTG	2 cut(s)	16, 911
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	1637
Cfr13I	GGNCC	3 cut(s)	1103, 1174, 1580
CseI	GACGC	3 cut(s)	431, 680, 1450
Csp6I	GTAC	2 cut(s)	174, 354
CviQI	GTAC	2 cut(s)	174, 354
DdeI	CTNAG	9 cut(s)	255, 369, 404, 1050, 1200, 1333, 1395, 1424, 1736
DpnI	GATC	4 cut(s)	276, 751, 1530, 1577
DpnII	GATC	4 cut(s)	274, 749, 1528, 1575
EaeI	YGGCCR	1 cut(s)	1112
Eco130I	CCWWGG	2 cut(s)	178, 569
Eco147I	AGGCCT	1 cut(s)	883
Eco31I	GGTCTC	1 cut(s)	808
Eco32I	GATATC	1 cut(s)	1564
Eco47I	GGWCC	2 cut(s)	1103, 1174
Eco57I	CTGAAG	3 cut(s)	87, 987, 1335
Eco88I	CYCGRG	1 cut(s)	1042
EcoNI	CCTNNNNNAGG	1 cut(s)	1370
EcoRI	GAATTC	1 cut(s)	1658
EcoRII	CCWGG	1 cut(s)	809
EcoRV	GATATC	1 cut(s)	1564
EcoT14I	CCWWGG	2 cut(s)	178, 569
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	178, 569
FalI	AAGNNNNNCTT	2 cut(s)	1729, 1761
FaqI	GGGAC	3 cut(s)	434, 1584, 1777
FbaI	TGATCA	1 cut(s)	1528
Fnu4HI	GCNGC	3 cut(s)	463, 509, 963
FokI	GGATG	5 cut(s)	148, 360, 766, 782, 1432
Fsp4HI	GCNGC	3 cut(s)	463, 509, 963
FspBI	CTAG	4 cut(s)	93, 1212, 1452, 1751
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	463, 509, 963
GsaI	CCCAGC	1 cut(s)	908
GsuI	CTGGAG	3 cut(s)	660, 1326, 1568
HaeIII	GGCC	4 cut(s)	883, 972, 1114, 1581
HapII	CCGG	2 cut(s)	384, 1638
HgaI	GACGC	3 cut(s)	431, 680, 1450
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	455, 619
HindII	GTYRAC	2 cut(s)	455, 619
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	2 cut(s)	384, 1638
HphI	GGTGA	5 cut(s)	312, 1068, 1401, 1652, 1684
Hpy166II	GTNNAC	6 cut(s)	136, 320, 455, 619, 1504, 1608
Hpy188I	TCNGA	8 cut(s)	115, 166, 314, 407, 742, 1351, 1363, 1780
Hpy8I	GTNNAC	6 cut(s)	136, 320, 455, 619, 1504, 1608
HpyAV	CCTTC	9 cut(s)	120, 230, 678, 962, 1310, 1366, 1514, 1613, 1754
HpyCH4III	ACNGT	3 cut(s)	865, 1084, 1768
HpyCH4IV	ACGT	6 cut(s)	6, 427, 932, 1585, 1704, 1732
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 301, 505, 527
HpyF3I	CTNAG	9 cut(s)	255, 369, 404, 1050, 1200, 1333, 1395, 1424, 1736
HpySE526I	ACGT	6 cut(s)	6, 427, 932, 1585, 1704, 1732
Hsp92I	GRCGYC	1 cut(s)	442
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	1528
KspAI	GTTAAC	1 cut(s)	619
Kzo9I	GATC	4 cut(s)	274, 749, 1528, 1575
LmnI	GCTCC	4 cut(s)	679, 913, 1262, 1307
Lsp1109I	GCAGC	3 cut(s)	474, 495, 949
LweI	GCATC	7 cut(s)	170, 530, 788, 1158, 1307, 1454, 1620
MaeI	CTAG	4 cut(s)	93, 1212, 1452, 1751
MaeII	ACGT	6 cut(s)	6, 427, 932, 1585, 1704, 1732
MaeIII	GTNAC	6 cut(s)	361, 943, 1586, 1640, 1664, 1768
MalI	GATC	4 cut(s)	276, 751, 1530, 1577
MboI	GATC	4 cut(s)	274, 749, 1528, 1575
MboII	GAAGA	7 cut(s)	269, 883, 1065, 1204, 1689, 1720, 1737
MfeI	CAATTG	1 cut(s)	950
MflI	RGATCY	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	1114
MluNI	TGGCCA	1 cut(s)	1114
MlyI	GAGTC	5 cut(s)	232, 586, 782, 1355, 1465
MmeI	TCCRAC	4 cut(s)	412, 616, 1163, 1635
Mox20I	TGGCCA	1 cut(s)	1114
Mph1103I	ATGCAT	1 cut(s)	501
MroXI	GAANNNNTTC	2 cut(s)	219, 688
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	6 cut(s)	59, 377, 618, 756, 1251, 1783
MslI	CAYNNNNRTG	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	1114
MspI	CCGG	2 cut(s)	384, 1638
MspR9I	CCNGG	2 cut(s)	385, 811
MunI	CAATTG	1 cut(s)	950
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	811
MvnI	CGCG	2 cut(s)	920, 1461
MwoI	GCNNNNNNNGC	4 cut(s)	10, 301, 505, 527
NciI	CCSGG	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	274, 749, 1528, 1575
NlaIV	GGNNCC	1 cut(s)	1309
NmeAIII	GCCGAG	2 cut(s)	865, 1369
NmuCI	GTSAC	2 cut(s)	943, 1640
NsbI	TGCGCA	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	4 cut(s)	469, 499, 503, 530
NspV	TTCGAA	1 cut(s)	1370
PaeI	GCATGC	2 cut(s)	469, 499
PaeR7I	CTCGAG	1 cut(s)	1042
PasI	CCCWGGG	1 cut(s)	810
PceI	AGGCCT	1 cut(s)	883
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	2 cut(s)	219, 688
PfeI	GAWTC	7 cut(s)	297, 389, 645, 737, 821, 1000, 1680
PflFI	GACNNNGTC	1 cut(s)	800
PflMI	CCANNNNNTGG	1 cut(s)	1267
PkrI	GCNGC	3 cut(s)	464, 510, 964
PleI	GAGTC	5 cut(s)	232, 585, 781, 1354, 1464
PpsI	GAGTC	5 cut(s)	232, 585, 781, 1354, 1464
Ppu21I	YACGTR	2 cut(s)	428, 1586
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	809
PspFI	CCCAGC	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	1 cut(s)	1309
PspPI	GGNCC	3 cut(s)	1103, 1174, 1580
PstNI	CAGNNNCTG	2 cut(s)	16, 911
PsuI	RGATCY	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	2 cut(s)	175, 355
RsaNI	GTAC	2 cut(s)	174, 354
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	6 cut(s)	59, 377, 618, 756, 1251, 1783
SatI	GCNGC	3 cut(s)	463, 509, 963
Sau3AI	GATC	4 cut(s)	274, 749, 1528, 1575
Sau96I	GGNCC	3 cut(s)	1103, 1174, 1580
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	5 cut(s)	232, 586, 782, 1355, 1465
ScrFI	CCNGG	2 cut(s)	385, 811
SfaNI	GCATC	7 cut(s)	170, 530, 788, 1158, 1307, 1454, 1620
Sfr274I	CTCGAG	1 cut(s)	1042
SfuI	TTCGAA	1 cut(s)	1370
SinI	GGWCC	2 cut(s)	1103, 1174
SlaI	CTCGAG	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	240, 710, 1042
SmoI	CTYRAG	3 cut(s)	240, 710, 1042
SpeI	ACTAGT	1 cut(s)	92
SphI	GCATGC	2 cut(s)	469, 499
SseBI	AGGCCT	1 cut(s)	883
SsiI	CCGC	1 cut(s)	918
SspMI	CTAG	4 cut(s)	93, 1212, 1452, 1751
StuI	AGGCCT	1 cut(s)	883
StyD4I	CCNGG	2 cut(s)	383, 809
StyI	CCWWGG	2 cut(s)	178, 569
TaaI	ACNGT	3 cut(s)	865, 1084, 1768
TaiI	ACGT	6 cut(s)	9, 430, 935, 1588, 1707, 1735
TaqI	TCGA	3 cut(s)	1043, 1370, 1495
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	7 cut(s)	297, 389, 645, 737, 821, 1000, 1680
Tru1I	TTAA	6 cut(s)	59, 377, 618, 756, 1251, 1783
Tru9I	TTAA	6 cut(s)	59, 377, 618, 756, 1251, 1783
TscAI	CASTG	8 cut(s)	234, 868, 1272, 1318, 1341, 1428, 1506, 1615
TseFI	GTSAC	2 cut(s)	943, 1640
TseI	GCWGC	3 cut(s)	462, 508, 962
Tsp45I	GTSAC	2 cut(s)	943, 1640
TspDTI	ATGAA	4 cut(s)	269, 574, 1134, 1632
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	8 cut(s)	234, 868, 1272, 1318, 1341, 1428, 1506, 1615
Tth111I	GACNNNGTC	1 cut(s)	800
Van91I	CCANNNNNTGG	1 cut(s)	1267
VpaK11BI	GGWCC	2 cut(s)	1103, 1174
XagI	CCTNNNNNAGG	1 cut(s)	1370
XapI	RAATTY	1 cut(s)	1658
XceI	RCATGY	4 cut(s)	469, 499, 503, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1590
XhoI	CTCGAG	1 cut(s)	1042
XmnI	GAANNNNTTC	2 cut(s)	219, 688
XspI	CTAG	4 cut(s)	93, 1212, 1452, 1751
ZrmI	AGTACT	1 cut(s)	355
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.