Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009840

Physical Location & Seq

Genomic Coordinates Reverse (-)

63196531 .. 63200405

Gene Structure 3875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGATGACGAATCAAGCAGGGTCGTATTCTCAGCCGGAAGGAGGAGATGTTCTGTATCCGGAGCTATGGAAGGCCTGTGCGGGCCCACTCGTTGAAGTCCCTCGCCATAAGGAGAGAGTCTACTACTTTCCACAAGGGCACATGGAGCAATTAGAGGCATCAACAACAACAAATCCGGAAGTGAATCAGGGGATTCCGAGGTTTAATCTTCCCTCGAAGATTCTCTGTCGCGTCATGCACGTTCAGCTACTGGCTGAACAAGAAACAGATGAGGTTTATGCGCAAATTACTTTAATTCCTGAAGCAAATCAAACCAGCGGACCTACTAGTCCTGATGAGTGTCCTTCTGAACCTGAAAGACCAAAGGTTTACCCATTCTGCAAGGTTCTTACTGCATCCGATACGAGTACCCATGGTGGGTTTTCTGTTCTACGCAAACACGCTACTGAATGCCTTCCTCCACTGGACAAGACTCAAGCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCACATTTTCAGAGGTTCACCACGGAGACACTTGCTTACAACAGGATGGAGTACTTTTGTTACTTCTAAGAGGTTAAGTGCCGGGGATTCCTTTGTATTTCTCAGAGGCGAAAACGGGGACTTACGTGTTGGAATTAGGCGTCTTGCTCGTCAACAGAGCAGCATGCCATCATCTGTGATTTCAAGTCAAAGCATGCATGTAGGGGTGCTTGCTACTGCATCACATGCTGTTGCAACCCAAACACTCTTTGTAGTGTATTATAAGCCCAGGACGAGTCAGTTCATTATTAGTTTGAATAAGTATTTGGAGGCTGTTAACAATAAGTTCTCGGTTGGAATGAGATTCAAGATGAGGTTTGAGGGGGAGGACGCTCCAGAGAGAAGGTTTTCAGGCACTATAATTGGTCTTGAGGATATATCTCCTCATTGGGCAGATTCAGAATGGCGATCCCTTAAAGTTCAATGGGATGAGTCTGCATCCATTCCCAGACCTGACAGGGTCTCGCCCTGGGAGATAGAACCTTATGTGGCTTCCATACCTGCGAGCCTTTCTCAATCCACTGTTTTGAAGAACAAAAGGCCTCGGCTACTCCCTGAAATCCCAGCTCCTGATACCGCGAGTTCAATAACGTGGCATGATGTGACACAATTGAGTGGTGCAGCTGAAGGCCAGAGAAGTGAAAATTATGTTTCTTTGAATCATCAGCAGGCAGACATTAGCAGTTGTATCTCAAGGACTAAGACTGATGGGGGCTGGCTATCTTCACCTACGGTGGATAGTAAAAGTGGCCCTGCTTGGCCACTTTTCTCTGGATATTCAACTCCAACTTCATCAAAGCCCATAAATGACTTGATGCTGGACCATGTTGAAAAGAGGAAGAAAACTGAGACAGGTGCTAGTTGCCTAATTTTCGGTGTAGATTTTAGCAGTCATCTTAACAGCTCCCATTCAGTGGAGAAGCCACCCCCACAACCAATTATAGCATCTACTGGAGCCACTGAAGGACAAGTTAGTATCTCAGTGGAAGCCGAGTCTGACCAGAAATCTGACCTTTCAAAGGCTTCTAAAGAAAGCAAAGCTCAGTTTCAAGTATCACCGAAAGAGACACTGAGCAAGCAGAGTAGCTCTGCATCCACTAGGAGTCGCGTCAAGGTTCAAATGCAGGGAATAGCTGTTGGTCGAGCAGTGGACTTGACAATGCTGGAAGGGTATGATCAACTTATAGTTGAACTGGAGGAGATGTTTGATATCAAGGGACAGATCGGCCCACGTAAAAAGTGGGAAATTGTGTTCACTGATGATGAAGGAGATATGATGCTTGCCGGTGACGACCCGTGGTTGGAATTCTGTAACATGGTGAGAAGAATCTTTATATGTTCAAGTCAGGACGTGAAGAAAATTAGTGCAGGGAGAAAACGTCTAAGTATGTCTTCACTAGAAGTTGAAGGGACAGTAACAAGTTCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

669

Amino Acids

74.08

Weight (kDa)

6.28

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 226	3.6e-23	B3 DNA binding domain
BRWD_AD	PF25313	258 - 354	3.5e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	273 - 354	2.2e-36	Auxin response factor ancillary domain
AUX_IAA	PF02309	546 - 643	7.3e-11	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23980 AT4G23980
fragaria_vesca	FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690
malus_domestica	MD06G1111100.v1.1 MD14G1131900.v1.1
prunus_persica	Prupe.5G123400_v2.0.a1
pyrus_communis	pycom06g10410
rosa_chinensis	RchiOBHm_Chr7g0186081
rosa_laevigata	RLG00000004866
rosa_multiflora	Rmu_sc0000194.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268450
rosa_rugosa	Rorug06G0472100
rosa_samantha	Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500
rosa_wichuraiana	Rw7G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AasI	GACNNNNNNGTC	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	1084
AccB7I	CCANNNNNTGG	1 cut(s)	1489
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	3 cut(s)	231, 1154, 1683
AccIII	TCCGGA	2 cut(s)	58, 175
AciI	CCGC	3 cut(s)	80, 318, 1152
AclWI	GGATC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	1334
AcsI	RAATTY	1 cut(s)	1880
AcuI	CTGAAG	3 cut(s)	321, 1221, 1557
AcyI	GRCGYC	1 cut(s)	676
AfaI	GTAC	2 cut(s)	409, 589
AfiI	CCNNNNNNNGG	6 cut(s)	41, 417, 490, 1489, 1594, 1876
AflIII	ACRYGT	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	1927
AjnI	CCWGG	2 cut(s)	803, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AloI	GAACNNNNNNTCC	4 cut(s)	33, 65, 1811, 1843
AluBI	AGCT	8 cut(s)	64, 247, 1142, 1199, 1479, 1616, 1662, 1709
AluI	AGCT	8 cut(s)	64, 247, 1142, 1199, 1479, 1616, 1662, 1709
Alw26I	GTCTC	4 cut(s)	556, 1042, 1418, 1634
AlwI	GGATC	1 cut(s)	978
AlwNI	CAGNNNCTG	2 cut(s)	250, 1145
Aor13HI	TCCGGA	2 cut(s)	58, 175
AoxI	GGCC	7 cut(s)	72, 82, 1115, 1204, 1324, 1334, 1801
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	696, 1196
ApoI	RAATTY	1 cut(s)	1880
Asp700I	GAANNNNTTC	2 cut(s)	453, 922
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	6 cut(s)	82, 83, 320, 1325, 1396, 1802
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	5 cut(s)	546, 1293, 1623, 1874, 1906
AvaII	GGWCC	2 cut(s)	320, 1396
BaeGI	GKGCMC	2 cut(s)	86, 141
BalI	TGGCCA	1 cut(s)	1336
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	1959
BbvI	GCAGC	2 cut(s)	708, 1208
BccI	CCATC	3 cut(s)	576, 712, 1277
BciT130I	CCWGG	2 cut(s)	805, 1045
BciVI	GTATCC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	1750
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	556, 1042, 1418, 1634
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	4 cut(s)	327, 1434, 1674, 1973
BfuAI	ACCTGC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	2 cut(s)	697, 1197
BlsI	GCNGC	2 cut(s)	698, 1198
BmcAI	AGTACT	1 cut(s)	589
Bme1390I	CCNGG	3 cut(s)	619, 805, 1045
Bme18I	GGWCC	2 cut(s)	320, 1396
BmgBI	CACGTC	1 cut(s)	1927
BmgT120I	GGNCC	6 cut(s)	82, 83, 320, 1325, 1396, 1802
BmiI	GGNNCC	2 cut(s)	84, 1531
BmrFI	CCNGG	3 cut(s)	619, 805, 1045
BmsI	GCATC	8 cut(s)	167, 404, 764, 1022, 1380, 1529, 1676, 1842
BpiI	GAAGAC	1 cut(s)	1959
BplI	GAGNNNNNCTC	2 cut(s)	1072, 1104
BpmI	CTGGAG	3 cut(s)	894, 1548, 1790
BpuEI	CTTGAG	3 cut(s)	459, 965, 1252
BpuMI	CCSGG	1 cut(s)	619
BsaAI	YACGTR	2 cut(s)	662, 1808
BsaHI	GRCGYC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	1042
BsaJI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1871
BsaWI	WCCGGW	2 cut(s)	58, 175
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 1763, 1793, 1939, 1969
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 417, 490, 1489, 1594, 1876
Bse118I	RCCGGY	1 cut(s)	1859
Bse1I	ACTGG	4 cut(s)	255, 468, 1531, 1773
BseAI	TCCGGA	2 cut(s)	58, 175
BseBI	CCWGG	2 cut(s)	805, 1045
BseDI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1871
BseGI	GGATG	5 cut(s)	395, 587, 1009, 1013, 1667
BseLI	CCNNNNNNNGG	6 cut(s)	41, 417, 490, 1489, 1594, 1876
BseMII	CTCAG	7 cut(s)	44, 503, 652, 1413, 1569, 1631, 1637
BseNI	ACTGG	4 cut(s)	255, 468, 1531, 1773
BseRI	GAGGAG	3 cut(s)	57, 948, 1787
BseSI	GKGCMC	2 cut(s)	86, 141
BseXI	GCAGC	2 cut(s)	708, 1208
BseYI	CCCAGC	1 cut(s)	1138
BsgI	GTGCAG	2 cut(s)	1215, 1962
Bsh1236I	CGCG	3 cut(s)	231, 1154, 1683
BshFI	GGCC	7 cut(s)	74, 84, 1117, 1206, 1326, 1336, 1803
BsiSI	CCGG	5 cut(s)	35, 59, 176, 618, 1860
BslFI	GGGAC	4 cut(s)	83, 668, 1806, 1999
BslI	CCNNNNNNNGG	6 cut(s)	41, 417, 490, 1489, 1594, 1876
BsmAI	GTCTC	4 cut(s)	556, 1042, 1418, 1634
BsmFI	GGGAC	4 cut(s)	83, 668, 1806, 1999
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	7 cut(s)	74, 84, 1117, 1206, 1326, 1336, 1803
Bso31I	GGTCTC	1 cut(s)	1042
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	86, 141
Bsp13I	TCCGGA	2 cut(s)	58, 175
Bsp143I	GATC	4 cut(s)	508, 983, 1750, 1797
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	3 cut(s)	80, 318, 1152
BspANI	GGCC	7 cut(s)	74, 84, 1117, 1206, 1326, 1336, 1803
BspCNI	CTCAG	7 cut(s)	43, 502, 651, 1414, 1568, 1630, 1638
BspEI	TCCGGA	2 cut(s)	58, 175
BspFNI	CGCG	3 cut(s)	231, 1154, 1683
BspLI	GGNNCC	2 cut(s)	84, 1531
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	1 cut(s)	978
BspTNI	GGTCTC	1 cut(s)	1042
BsrFI	RCCGGY	1 cut(s)	1859
BsrI	ACTGG	4 cut(s)	255, 468, 1531, 1773
BssAI	RCCGGY	1 cut(s)	1859
BssECI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1871
BssMI	GATC	4 cut(s)	508, 983, 1750, 1797
BssNI	GRCGYC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	805, 1045
Bst4CI	ACNGT	3 cut(s)	1099, 1309, 1990
BstACI	GRCGYC	1 cut(s)	676
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	2 cut(s)	662, 1808
BstC8I	GCNNGC	9 cut(s)	82, 701, 731, 747, 1081, 1245, 1292, 1652, 1857
BstDSI	CCRYGG	3 cut(s)	412, 557, 1871
BstENI	CCTNNNNNAGG	1 cut(s)	1592
BstF5I	GGATG	5 cut(s)	395, 587, 1009, 1013, 1667
BstFNI	CGCG	3 cut(s)	231, 1154, 1683
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	511, 986, 1753, 1800
BstMAI	GTCTC	4 cut(s)	556, 1042, 1418, 1634
BstMBI	GATC	4 cut(s)	508, 983, 1750, 1797
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
BstNI	CCWGG	2 cut(s)	805, 1045
BstNSI	RCATGY	4 cut(s)	703, 733, 737, 764
BstSCI	CCNGG	3 cut(s)	617, 803, 1043
BstSLI	GKGCMC	2 cut(s)	86, 141
BstUI	CGCG	3 cut(s)	231, 1154, 1683
BstV1I	GCAGC	2 cut(s)	708, 1208
BstV2I	GAAGAC	1 cut(s)	1959
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	7 cut(s)	74, 84, 1117, 1206, 1326, 1336, 1803
BtgI	CCRYGG	3 cut(s)	412, 557, 1871
BtrI	CACGTC	1 cut(s)	1927
BtsCI	GGATG	5 cut(s)	395, 587, 1009, 1013, 1667
BtsI	GCAGTG	1 cut(s)	1728
BtsIMutI	CAGTG	8 cut(s)	461, 1095, 1494, 1533, 1563, 1643, 1728, 1830
BveI	ACCTGC	1 cut(s)	1084
Cac8I	GCNNGC	9 cut(s)	82, 701, 731, 747, 1081, 1245, 1292, 1652, 1857
CaiI	CAGNNNCTG	2 cut(s)	250, 1145
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	1859
Cfr13I	GGNCC	6 cut(s)	82, 83, 320, 1325, 1396, 1802
CseI	GACGC	4 cut(s)	220, 665, 914, 1672
Csp6I	GTAC	2 cut(s)	408, 588
CviQI	GTAC	2 cut(s)	408, 588
DpnI	GATC	4 cut(s)	510, 985, 1752, 1799
DpnII	GATC	4 cut(s)	508, 983, 1750, 1797
DrdI	GACNNNNNNGTC	1 cut(s)	327
DseDI	GACNNNNNNGTC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	1334
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	2 cut(s)	74, 1117
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	1042
Eco32I	GATATC	1 cut(s)	1786
Eco47I	GGWCC	2 cut(s)	320, 1396
Eco57I	CTGAAG	3 cut(s)	321, 1221, 1557
EcoNI	CCTNNNNNAGG	1 cut(s)	1592
EcoRI	GAATTC	1 cut(s)	1880
EcoRII	CCWGG	2 cut(s)	803, 1043
EcoRV	GATATC	1 cut(s)	1786
EcoT14I	CCWWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	412
FalI	AAGNNNNNCTT	2 cut(s)	1951, 1983
FaqI	GGGAC	4 cut(s)	83, 668, 1806, 1999
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	1750
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	697, 1197
FokI	GGATG	5 cut(s)	382, 594, 1000, 1016, 1654
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	697, 1197
FspBI	CTAG	4 cut(s)	327, 1434, 1674, 1973
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	697, 1197
GsaI	CCCAGC	1 cut(s)	1142
GsuI	CTGGAG	3 cut(s)	894, 1548, 1790
HaeIII	GGCC	7 cut(s)	74, 84, 1117, 1206, 1326, 1336, 1803
HapII	CCGG	5 cut(s)	35, 59, 176, 618, 1860
HgaI	GACGC	4 cut(s)	220, 665, 914, 1672
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	2 cut(s)	689, 853
HindII	GTYRAC	2 cut(s)	689, 853
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	5 cut(s)	35, 59, 176, 618, 1860
HphI	GGTGA	5 cut(s)	546, 1293, 1623, 1874, 1906
Hpy166II	GTNNAC	7 cut(s)	121, 370, 554, 689, 853, 1726, 1830
Hpy188I	TCNGA	9 cut(s)	198, 349, 400, 548, 641, 976, 1573, 1585, 2002
Hpy8I	GTNNAC	7 cut(s)	121, 370, 554, 689, 853, 1726, 1830
HpyCH4III	ACNGT	3 cut(s)	1099, 1309, 1990
HpyCH4IV	ACGT	6 cut(s)	240, 661, 1166, 1807, 1926, 1954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
HpySE526I	ACGT	6 cut(s)	240, 661, 1166, 1807, 1926, 1954
Hsp92I	GRCGYC	1 cut(s)	676
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	2 cut(s)	58, 175
Ksp22I	TGATCA	1 cut(s)	1750
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	508, 983, 1750, 1797
LmnI	GCTCC	6 cut(s)	61, 145, 913, 1147, 1484, 1529
Lsp1109I	GCAGC	2 cut(s)	708, 1208
LweI	GCATC	8 cut(s)	167, 404, 764, 1022, 1380, 1529, 1676, 1842
MaeI	CTAG	4 cut(s)	327, 1434, 1674, 1973
MaeII	ACGT	6 cut(s)	240, 661, 1166, 1807, 1926, 1954
MaeIII	GTNAC	5 cut(s)	595, 1177, 1862, 1886, 1990
MalI	GATC	4 cut(s)	510, 985, 1752, 1799
MboI	GATC	4 cut(s)	508, 983, 1750, 1797
MboII	GAAGA	9 cut(s)	200, 229, 503, 1117, 1290, 1426, 1911, 1942, 1959
MfeI	CAATTG	1 cut(s)	1184
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	86, 141
MlsI	TGGCCA	1 cut(s)	1336
MluNI	TGGCCA	1 cut(s)	1336
MlyI	GAGTC	6 cut(s)	126, 466, 820, 1016, 1577, 1687
MmeI	TCCRAC	4 cut(s)	646, 850, 1385, 1857
Mox20I	TGGCCA	1 cut(s)	1336
Mph1103I	ATGCAT	1 cut(s)	735
MroI	TCCGGA	2 cut(s)	58, 175
MroXI	GAANNNNTTC	2 cut(s)	453, 922
MscI	TGGCCA	1 cut(s)	1336
MseI	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1473, 2005
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	1336
MspA1I	CMGCKG	2 cut(s)	318, 1199
MspI	CCGG	5 cut(s)	35, 59, 176, 618, 1860
MspR9I	CCNGG	3 cut(s)	619, 805, 1045
MunI	CAATTG	1 cut(s)	1184
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	805, 1045
MvnI	CGCG	3 cut(s)	231, 1154, 1683
MwoI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	508, 983, 1750, 1797
NlaIV	GGNNCC	2 cut(s)	84, 1531
NmeAIII	GCCGAG	2 cut(s)	1099, 1591
NmuCI	GTSAC	2 cut(s)	1177, 1862
NsbI	TGCGCA	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	4 cut(s)	703, 733, 737, 764
PaeI	GCATGC	2 cut(s)	703, 733
PasI	CCCWGGG	1 cut(s)	1044
PceI	AGGCCT	2 cut(s)	74, 1117
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	453, 922
PflFI	GACNNNGTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	1 cut(s)	1489
PkrI	GCNGC	2 cut(s)	698, 1198
PleI	GAGTC	6 cut(s)	125, 466, 819, 1015, 1576, 1686
PpsI	GAGTC	6 cut(s)	125, 466, 819, 1015, 1576, 1686
Ppu21I	YACGTR	2 cut(s)	662, 1808
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	803, 1043
PspFI	CCCAGC	1 cut(s)	1138
PspGI	CCWGG	2 cut(s)	803, 1043
PspN4I	GGNNCC	2 cut(s)	84, 1531
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	6 cut(s)	82, 83, 320, 1325, 1396, 1802
PstNI	CAGNNNCTG	2 cut(s)	250, 1145
PsuI	RGATCY	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	1034
PvuII	CAGCTG	1 cut(s)	1199
RsaI	GTAC	2 cut(s)	409, 589
RsaNI	GTAC	2 cut(s)	408, 588
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1473, 2005
SatI	GCNGC	2 cut(s)	697, 1197
Sau3AI	GATC	4 cut(s)	508, 983, 1750, 1797
Sau96I	GGNCC	6 cut(s)	82, 83, 320, 1325, 1396, 1802
ScaI	AGTACT	1 cut(s)	589
SchI	GAGTC	6 cut(s)	126, 466, 820, 1016, 1577, 1687
ScrFI	CCNGG	3 cut(s)	619, 805, 1045
SduI	GDGCHC	2 cut(s)	86, 141
SfaNI	GCATC	8 cut(s)	167, 404, 764, 1022, 1380, 1529, 1676, 1842
SinI	GGWCC	2 cut(s)	320, 1396
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	3 cut(s)	474, 944, 1267
SmoI	CTYRAG	3 cut(s)	474, 944, 1267
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	2 cut(s)	703, 733
SseBI	AGGCCT	2 cut(s)	74, 1117
SsiI	CCGC	3 cut(s)	80, 318, 1152
SspMI	CTAG	4 cut(s)	327, 1434, 1674, 1973
StuI	AGGCCT	2 cut(s)	74, 1117
StyD4I	CCNGG	3 cut(s)	617, 803, 1043
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	1099, 1309, 1990
TaiI	ACGT	6 cut(s)	243, 664, 1169, 1810, 1929, 1957
TaqI	TCGA	2 cut(s)	215, 1717
TatI	WGTACW	1 cut(s)	587
Tru1I	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1473, 2005
Tru9I	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1473, 2005
TscAI	CASTG	8 cut(s)	468, 1102, 1494, 1540, 1563, 1650, 1728, 1837
TseFI	GTSAC	2 cut(s)	1177, 1862
TseI	GCWGC	2 cut(s)	696, 1196
Tsp45I	GTSAC	2 cut(s)	1177, 1862
TspDTI	ATGAA	4 cut(s)	503, 808, 1356, 1854
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	8 cut(s)	468, 1102, 1494, 1540, 1563, 1650, 1728, 1837
Tth111I	GACNNNGTC	1 cut(s)	1034
Van91I	CCANNNNNTGG	1 cut(s)	1489
VpaK11BI	GGWCC	2 cut(s)	320, 1396
XagI	CCTNNNNNAGG	1 cut(s)	1592
XapI	RAATTY	1 cut(s)	1880
XceI	RCATGY	4 cut(s)	703, 733, 737, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1812
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	2 cut(s)	453, 922
XspI	CTAG	4 cut(s)	327, 1434, 1674, 1973
ZrmI	AGTACT	1 cut(s)	589
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.