Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009840

Physical Location & Seq

Genomic Coordinates Forward (+)

5584214 .. 5588041

Gene Structure 3828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGATGACGAATCAAGCAGGGTCGTATTCGCAGCCGGAAGGGGGAGATGTTCTGTATCCGGAGCTATGGAAGGCCTGCGCGGGCCCACTCGTGGAAGTCCCTCGCCATAAGGAGAGAGTCTACTACTTTCTACAAGGGCACATGGAGCAATTAGAGGCATCAACAACAACAAATCCGGAAGTGAATCAGGGGATTCCGAGGTTTAATCTTCCCTCGAAGATTCTCTGTCGCGTCATGCACGTTCAGCTACTGGCTGAACAAGAAACAGATGAGGTTTATGCGCAAATTACTTTAATTCCTGAAGCAAATCAAACCACCAAACCTACTAGTCCTGATGAGTGTCCTTCCGAACCTGAAAGACCAAAGGTTTACCCATTCTGCAAGGTTCTTACTGCATCCGATACGAGTACCCATGGTGGGTTTTCTGTTCTACGCAAACACGCTACTGAATGCCTTCCTCCACTGGACAAGACTCAAGCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGTTATGAGTGGCGATTCAAGCACATTTTCAGAGGTTCACCACGGAGACACTTGCTTACAACAGGATGGAGTACTTTTGTTACTTCTAAGAGGTTAAGTGCCGGGGATTCCTTTGTATTTCTCAGAGGCGAAAACGGGGACTTACGTGTTGGAATTAGGCGTCTTGCTCGTCAACAGAGCAGCATGCCATCATCTGTGATTTCAAGTCAAAGCATGCATGTAGGGGTGCTTGCTACTGCATCACATGCTGTTGCAACCCAAACACTCTTTGTAGTGTATTATAAGCCAAGGACAAGTCAGTTCATTATTAGTTTGAATAAGTATTTGGAGGCTGTTAACAATAAGTTCTCAGTTGGAATGAGATTCAAGATGAGGTTTGAGGGGGAGGACGCTCCAGAGAGAAGGTTTTCAGGCACTATAATTGGTCTTGAGGATATATCTCCTCATTGGGCAGATTCAGAATGGCGATCCCTTAAAGTTCAATGGGATGAGTCTGCATCCATTCCCAGACCTGACAGGGTCTCGCCCTGGGAGATAGAACCTTATGTGGCTTCCATACCTGCGAGCCTTTCTCCATCCACTGTTTTGAAGAACAAAAGGCCTCGGCTACTCCCTGAAATCCCAGCTCCTGATACCGCGAGTTCAATAACGTGGCATGATGTGACACAATTGAGTGGTGCTGCTGAAGGCCAGAGAAGTGAAAATCATGTTTCTTTGAATCATCAGCAGGCAGACATTATCAGCAGTAGCACTTGTATCTCGAGGACTAAGACTGATGGGGGCTGGCTATCTTCACCTACGGTGGAGGATAGTAAAAGTGGTCCTGCTTGGCCACGTTTCTCTGGATATTCAACTCCAACTTCATCAAAGCCTAAAAATGACTTGATACTGGACCATGTTGAAAAGAGGAAGAAAACTGAGACAGGTGCTAGTTGCCTAATTTTCGGTGTAGATTTTAGCAGTCATCTTAACAGCTCCCATTCAGTGGAGAAGCCACCCCCACAACCAATTATAGCATCTACTAGAGCCACTGAAGGACAAGTTAGTATCTCAGTGGAAGCTGAGTCTGACCAGAAATCTGACCTTTCGAAGGCTTCTAAAGAAAGCAAAGCTCAGTTTCAAGTATCACCGAAAGAGACACTGAGCAAGCAGAGTAGCTCTGCATCCACTAGGAGTCGCGTCAAGGTTCAAATGCAGGGAATAGCTGTTGGTCGAGCAGTGGACTTGACAATGCTGGAAGGGTATGATCAACTTATAGTTGAACTGGAGGAGATGTTTGATATCAAGGGACAGATCGGCCCACGTAACAAGTGGGAAATTGTGTTCACTGATGATGAAGGAGATATGATGCTTGCTGGTGACGACCCGTGGTTGGAATTCTGTAACATGGTGAGAAGAATCTTTATATGTTCAAGTCAGGACGTGAAGAAAATTAGTGCAGGGAGAAAACGTCTAAGTATGTCTTCACTAGAAGTTGAAGGGACAGTAACAAGTTCGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

672

Amino Acids

74.68

Weight (kDa)

6.52

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 226	3.6e-23	B3 DNA binding domain
BRWD_AD	PF25313	258 - 354	3.8e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	273 - 354	2.2e-36	Auxin response factor ancillary domain
AUX_IAA	PF02309	550 - 599	1.2e-07	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23980 AT4G23980
fragaria_vesca	FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690 FvH4_5g11690
malus_domestica	MD06G1111100.v1.1 MD14G1131900.v1.1
prunus_persica	Prupe.5G123400_v2.0.a1
pyrus_communis	pycom06g10410
rosa_chinensis	RchiOBHm_Chr7g0186081
rosa_laevigata	RLG00000004866
rosa_multiflora	Rmu_sc0000194.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268450
rosa_rugosa	Rorug06G0472100
rosa_samantha	Rh7AG069800 Rh7BG085600 Rh7CG078500 Rh7DG078500
rosa_wichuraiana	Rw7G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	1084
AccB7I	CCANNNNNTGG	1 cut(s)	1501
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	4 cut(s)	80, 231, 1154, 1695
AccIII	TCCGGA	2 cut(s)	58, 175
AciI	CCGC	2 cut(s)	80, 1152
AclWI	GGATC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	1346
AcsI	RAATTY	1 cut(s)	1892
AcuI	CTGAAG	3 cut(s)	321, 1221, 1569
AcyI	GRCGYC	1 cut(s)	676
AfaI	GTAC	2 cut(s)	409, 589
AfiI	CCNNNNNNNGG	7 cut(s)	41, 91, 417, 490, 1501, 1606, 1888
AflIII	ACRYGT	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	1939
AjnI	CCWGG	1 cut(s)	1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AloI	GAACNNNNNNTCC	2 cut(s)	1823, 1855
AluBI	AGCT	8 cut(s)	64, 247, 1142, 1491, 1577, 1628, 1674, 1721
AluI	AGCT	8 cut(s)	64, 247, 1142, 1491, 1577, 1628, 1674, 1721
Alw26I	GTCTC	4 cut(s)	556, 1042, 1430, 1646
AlwI	GGATC	1 cut(s)	978
AlwNI	CAGNNNCTG	2 cut(s)	250, 1145
Ama87I	CYCGRG	1 cut(s)	1276
Aor13HI	TCCGGA	2 cut(s)	58, 175
AoxI	GGCC	6 cut(s)	72, 82, 1115, 1204, 1346, 1813
ApaI	GGGCCC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	31, 696, 1196
ApoI	RAATTY	1 cut(s)	1892
Asp700I	GAANNNNTTC	2 cut(s)	453, 922
AspLEI	GCGC	2 cut(s)	80, 283
AspS9I	GGNCC	5 cut(s)	82, 83, 1337, 1408, 1814
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	5 cut(s)	546, 1302, 1635, 1886, 1918
AsuII	TTCGAA	1 cut(s)	1604
AvaI	CYCGRG	1 cut(s)	1276
AvaII	GGWCC	2 cut(s)	1337, 1408
BaeGI	GKGCMC	2 cut(s)	86, 141
BalI	TGGCCA	1 cut(s)	1348
BanII	GRGCYC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	1971
BbvI	GCAGC	3 cut(s)	43, 708, 1183
BccI	CCATC	4 cut(s)	576, 712, 1099, 1286
BciT130I	CCWGG	1 cut(s)	1045
BciVI	GTATCC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	1762
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	556, 1042, 1430, 1646
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	5 cut(s)	327, 1446, 1539, 1686, 1985
BfuAI	ACCTGC	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	32, 697, 1197
BlsI	GCNGC	3 cut(s)	33, 698, 1198
BmcAI	AGTACT	1 cut(s)	589
Bme1390I	CCNGG	2 cut(s)	619, 1045
Bme18I	GGWCC	2 cut(s)	1337, 1408
BmeT110I	CYCGRG	1 cut(s)	1276
BmgBI	CACGTC	1 cut(s)	1939
BmgT120I	GGNCC	5 cut(s)	82, 83, 1337, 1408, 1814
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	619, 1045
BmsI	GCATC	7 cut(s)	167, 404, 764, 1022, 1541, 1688, 1854
BpiI	GAAGAC	1 cut(s)	1971
BplI	GAGNNNNNCTC	2 cut(s)	1072, 1104
BpmI	CTGGAG	2 cut(s)	894, 1802
Bpu14I	TTCGAA	1 cut(s)	1604
BpuEI	CTTGAG	2 cut(s)	459, 965
BpuMI	CCSGG	1 cut(s)	619
BsaAI	YACGTR	2 cut(s)	662, 1820
BsaHI	GRCGYC	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	1042
BsaJI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1883
BsaWI	WCCGGW	2 cut(s)	58, 175
BsaXI	ACNNNNNCTCC	4 cut(s)	1775, 1805, 1951, 1981
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 91, 417, 490, 1501, 1606, 1888
Bse1I	ACTGG	4 cut(s)	255, 468, 1410, 1785
BseAI	TCCGGA	2 cut(s)	58, 175
BseBI	CCWGG	1 cut(s)	1045
BseDI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1883
BseGI	GGATG	6 cut(s)	395, 587, 1009, 1013, 1091, 1679
BseLI	CCNNNNNNNGG	7 cut(s)	41, 91, 417, 490, 1501, 1606, 1888
BseMII	CTCAG	8 cut(s)	503, 652, 879, 1425, 1569, 1581, 1643, 1649
BseNI	ACTGG	4 cut(s)	255, 468, 1410, 1785
BseRI	GAGGAG	2 cut(s)	948, 1799
BseSI	GKGCMC	2 cut(s)	86, 141
BseXI	GCAGC	3 cut(s)	43, 708, 1183
BseYI	CCCAGC	1 cut(s)	1138
BsgI	GTGCAG	1 cut(s)	1974
Bsh1236I	CGCG	4 cut(s)	80, 231, 1154, 1695
BshFI	GGCC	6 cut(s)	74, 84, 1117, 1206, 1348, 1815
BsiHKCI	CYCGRG	1 cut(s)	1276
BsiSI	CCGG	4 cut(s)	35, 59, 176, 618
BslFI	GGGAC	4 cut(s)	83, 668, 1818, 2011
BslI	CCNNNNNNNGG	7 cut(s)	41, 91, 417, 490, 1501, 1606, 1888
BsmAI	GTCTC	4 cut(s)	556, 1042, 1430, 1646
BsmFI	GGGAC	4 cut(s)	83, 668, 1818, 2011
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	6 cut(s)	74, 84, 1117, 1206, 1348, 1815
Bso31I	GGTCTC	1 cut(s)	1042
BsoBI	CYCGRG	1 cut(s)	1276
Bsp119I	TTCGAA	1 cut(s)	1604
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	86, 141
Bsp13I	TCCGGA	2 cut(s)	58, 175
Bsp143I	GATC	4 cut(s)	508, 983, 1762, 1809
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	80, 1152
BspANI	GGCC	6 cut(s)	74, 84, 1117, 1206, 1348, 1815
BspCNI	CTCAG	8 cut(s)	502, 651, 878, 1426, 1570, 1580, 1642, 1650
BspEI	TCCGGA	2 cut(s)	58, 175
BspFNI	CGCG	4 cut(s)	80, 231, 1154, 1695
BspLI	GGNNCC	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	1084
BspPI	GGATC	1 cut(s)	978
BspT104I	TTCGAA	1 cut(s)	1604
BspTNI	GGTCTC	1 cut(s)	1042
BsrI	ACTGG	4 cut(s)	255, 468, 1410, 1785
BssECI	CCNNGG	9 cut(s)	197, 412, 557, 618, 803, 1043, 1044, 1118, 1883
BssMI	GATC	4 cut(s)	508, 983, 1762, 1809
BssNI	GRCGYC	1 cut(s)	676
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	412, 803
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	1045
Bst4CI	ACNGT	3 cut(s)	1099, 1318, 2002
BstACI	GRCGYC	1 cut(s)	676
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	2 cut(s)	662, 1820
BstBI	TTCGAA	1 cut(s)	1604
BstDSI	CCRYGG	3 cut(s)	412, 557, 1883
BstENI	CCTNNNNNAGG	1 cut(s)	1604
BstF5I	GGATG	6 cut(s)	395, 587, 1009, 1013, 1091, 1679
BstFNI	CGCG	4 cut(s)	80, 231, 1154, 1695
BstHHI	GCGC	2 cut(s)	80, 283
BstKTI	GATC	4 cut(s)	511, 986, 1765, 1812
BstMAI	GTCTC	4 cut(s)	556, 1042, 1430, 1646
BstMBI	GATC	4 cut(s)	508, 983, 1762, 1809
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
BstNI	CCWGG	1 cut(s)	1045
BstNSI	RCATGY	4 cut(s)	703, 733, 737, 764
BstSCI	CCNGG	2 cut(s)	617, 1043
BstSLI	GKGCMC	2 cut(s)	86, 141
BstUI	CGCG	4 cut(s)	80, 231, 1154, 1695
BstV1I	GCAGC	3 cut(s)	43, 708, 1183
BstV2I	GAAGAC	1 cut(s)	1971
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	6 cut(s)	74, 84, 1117, 1206, 1348, 1815
BtgI	CCRYGG	3 cut(s)	412, 557, 1883
BtrI	CACGTC	1 cut(s)	1939
BtsCI	GGATG	6 cut(s)	395, 587, 1009, 1013, 1091, 1679
BtsI	GCAGTG	1 cut(s)	1740
BtsIMutI	CAGTG	8 cut(s)	461, 1095, 1506, 1545, 1575, 1655, 1740, 1842
BveI	ACCTGC	1 cut(s)	1084
CaiI	CAGNNNCTG	2 cut(s)	250, 1145
CfoI	GCGC	2 cut(s)	80, 283
Cfr13I	GGNCC	5 cut(s)	82, 83, 1337, 1408, 1814
CseI	GACGC	4 cut(s)	220, 665, 914, 1684
Csp6I	GTAC	2 cut(s)	408, 588
CviQI	GTAC	2 cut(s)	408, 588
DpnI	GATC	4 cut(s)	510, 985, 1764, 1811
DpnII	GATC	4 cut(s)	508, 983, 1762, 1809
EaeI	YGGCCR	1 cut(s)	1346
Eco130I	CCWWGG	2 cut(s)	412, 803
Eco147I	AGGCCT	2 cut(s)	74, 1117
Eco24I	GRGCYC	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	1042
Eco32I	GATATC	1 cut(s)	1798
Eco47I	GGWCC	2 cut(s)	1337, 1408
Eco57I	CTGAAG	3 cut(s)	321, 1221, 1569
Eco88I	CYCGRG	1 cut(s)	1276
EcoNI	CCTNNNNNAGG	1 cut(s)	1604
EcoRI	GAATTC	1 cut(s)	1892
EcoRII	CCWGG	1 cut(s)	1043
EcoRV	GATATC	1 cut(s)	1798
EcoT14I	CCWWGG	2 cut(s)	412, 803
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	2 cut(s)	412, 803
FalI	AAGNNNNNCTT	2 cut(s)	1963, 1995
FaqI	GGGAC	4 cut(s)	83, 668, 1818, 2011
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	1762
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	32, 697, 1197
FokI	GGATG	6 cut(s)	382, 594, 1000, 1016, 1078, 1666
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	32, 697, 1197
FspBI	CTAG	5 cut(s)	327, 1446, 1539, 1686, 1985
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	2 cut(s)	79, 282
GluI	GCNGC	3 cut(s)	32, 697, 1197
GsaI	CCCAGC	1 cut(s)	1142
GsuI	CTGGAG	2 cut(s)	894, 1802
HaeIII	GGCC	6 cut(s)	74, 84, 1117, 1206, 1348, 1815
HapII	CCGG	4 cut(s)	35, 59, 176, 618
HgaI	GACGC	4 cut(s)	220, 665, 914, 1684
HhaI	GCGC	2 cut(s)	80, 283
Hin1I	GRCGYC	1 cut(s)	676
Hin6I	GCGC	2 cut(s)	78, 281
HinP1I	GCGC	2 cut(s)	78, 281
HincII	GTYRAC	2 cut(s)	689, 853
HindII	GTYRAC	2 cut(s)	689, 853
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	4 cut(s)	35, 59, 176, 618
HphI	GGTGA	5 cut(s)	546, 1302, 1635, 1886, 1918
Hpy166II	GTNNAC	7 cut(s)	121, 370, 554, 689, 853, 1738, 1842
Hpy188I	TCNGA	9 cut(s)	198, 349, 400, 548, 641, 976, 1585, 1597, 2014
Hpy8I	GTNNAC	7 cut(s)	121, 370, 554, 689, 853, 1738, 1842
HpyCH4III	ACNGT	3 cut(s)	1099, 1318, 2002
HpyCH4IV	ACGT	7 cut(s)	240, 661, 1166, 1351, 1819, 1938, 1966
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
HpySE526I	ACGT	7 cut(s)	240, 661, 1166, 1351, 1819, 1938, 1966
Hsp92I	GRCGYC	1 cut(s)	676
HspAI	GCGC	2 cut(s)	78, 281
Kpn2I	TCCGGA	2 cut(s)	58, 175
Ksp22I	TGATCA	1 cut(s)	1762
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	508, 983, 1762, 1809
LmnI	GCTCC	5 cut(s)	61, 145, 913, 1147, 1496
Lsp1109I	GCAGC	3 cut(s)	43, 708, 1183
LweI	GCATC	7 cut(s)	167, 404, 764, 1022, 1541, 1688, 1854
MaeI	CTAG	5 cut(s)	327, 1446, 1539, 1686, 1985
MaeII	ACGT	7 cut(s)	240, 661, 1166, 1351, 1819, 1938, 1966
MaeIII	GTNAC	6 cut(s)	595, 1177, 1820, 1874, 1898, 2002
MalI	GATC	4 cut(s)	510, 985, 1764, 1811
MboI	GATC	4 cut(s)	508, 983, 1762, 1809
MboII	GAAGA	9 cut(s)	200, 229, 503, 1117, 1299, 1438, 1923, 1954, 1971
MfeI	CAATTG	1 cut(s)	1184
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	86, 141
MlsI	TGGCCA	1 cut(s)	1348
MluNI	TGGCCA	1 cut(s)	1348
MlyI	GAGTC	5 cut(s)	126, 466, 1016, 1589, 1699
MmeI	TCCRAC	4 cut(s)	646, 850, 1397, 1869
Mox20I	TGGCCA	1 cut(s)	1348
Mph1103I	ATGCAT	1 cut(s)	735
MroI	TCCGGA	2 cut(s)	58, 175
MroXI	GAANNNNTTC	2 cut(s)	453, 922
MscI	TGGCCA	1 cut(s)	1348
MseI	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1485, 2017
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	1348
MspI	CCGG	4 cut(s)	35, 59, 176, 618
MspR9I	CCNGG	2 cut(s)	619, 1045
MunI	CAATTG	1 cut(s)	1184
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	1045
MvnI	CGCG	4 cut(s)	80, 231, 1154, 1695
MwoI	GCNNNNNNNGC	4 cut(s)	145, 244, 535, 761
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	508, 983, 1762, 1809
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	1099
NmuCI	GTSAC	2 cut(s)	1177, 1874
NsbI	TGCGCA	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	4 cut(s)	703, 733, 737, 764
NspV	TTCGAA	1 cut(s)	1604
PaeI	GCATGC	2 cut(s)	703, 733
PaeR7I	CTCGAG	1 cut(s)	1276
PasI	CCCWGGG	1 cut(s)	1044
PceI	AGGCCT	2 cut(s)	74, 1117
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	453, 922
PflFI	GACNNNGTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	1 cut(s)	1501
PkrI	GCNGC	3 cut(s)	33, 698, 1198
PleI	GAGTC	5 cut(s)	125, 466, 1015, 1588, 1698
PpsI	GAGTC	5 cut(s)	125, 466, 1015, 1588, 1698
Ppu21I	YACGTR	2 cut(s)	662, 1820
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	1043
PspFI	CCCAGC	1 cut(s)	1138
PspGI	CCWGG	1 cut(s)	1043
PspN4I	GGNNCC	1 cut(s)	84
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	5 cut(s)	82, 83, 1337, 1408, 1814
PstNI	CAGNNNCTG	2 cut(s)	250, 1145
PsuI	RGATCY	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	1034
RsaI	GTAC	2 cut(s)	409, 589
RsaNI	GTAC	2 cut(s)	408, 588
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1485, 2017
SatI	GCNGC	3 cut(s)	32, 697, 1197
Sau3AI	GATC	4 cut(s)	508, 983, 1762, 1809
Sau96I	GGNCC	5 cut(s)	82, 83, 1337, 1408, 1814
ScaI	AGTACT	1 cut(s)	589
SchI	GAGTC	5 cut(s)	126, 466, 1016, 1589, 1699
ScrFI	CCNGG	2 cut(s)	619, 1045
SduI	GDGCHC	2 cut(s)	86, 141
SfaNI	GCATC	7 cut(s)	167, 404, 764, 1022, 1541, 1688, 1854
Sfr274I	CTCGAG	1 cut(s)	1276
SfuI	TTCGAA	1 cut(s)	1604
SinI	GGWCC	2 cut(s)	1337, 1408
SlaI	CTCGAG	1 cut(s)	1276
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	3 cut(s)	474, 944, 1276
SmoI	CTYRAG	3 cut(s)	474, 944, 1276
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	2 cut(s)	703, 733
SseBI	AGGCCT	2 cut(s)	74, 1117
SsiI	CCGC	2 cut(s)	80, 1152
SspMI	CTAG	5 cut(s)	327, 1446, 1539, 1686, 1985
StuI	AGGCCT	2 cut(s)	74, 1117
StyD4I	CCNGG	2 cut(s)	617, 1043
StyI	CCWWGG	2 cut(s)	412, 803
TaaI	ACNGT	3 cut(s)	1099, 1318, 2002
TaiI	ACGT	7 cut(s)	243, 664, 1169, 1354, 1822, 1941, 1969
TaqI	TCGA	4 cut(s)	215, 1277, 1604, 1729
TatI	WGTACW	1 cut(s)	587
Tru1I	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1485, 2017
Tru9I	TTAA	7 cut(s)	204, 293, 611, 852, 990, 1485, 2017
TscAI	CASTG	8 cut(s)	468, 1102, 1506, 1552, 1575, 1662, 1740, 1849
TseFI	GTSAC	2 cut(s)	1177, 1874
TseI	GCWGC	3 cut(s)	31, 696, 1196
Tsp45I	GTSAC	2 cut(s)	1177, 1874
TspDTI	ATGAA	4 cut(s)	503, 808, 1368, 1866
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	8 cut(s)	468, 1102, 1506, 1552, 1575, 1662, 1740, 1849
Tth111I	GACNNNGTC	1 cut(s)	1034
Van91I	CCANNNNNTGG	1 cut(s)	1501
VpaK11BI	GGWCC	2 cut(s)	1337, 1408
XagI	CCTNNNNNAGG	1 cut(s)	1604
XapI	RAATTY	1 cut(s)	1892
XceI	RCATGY	4 cut(s)	703, 733, 737, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1824
XhoI	CTCGAG	1 cut(s)	1276
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	2 cut(s)	453, 922
XspI	CTAG	5 cut(s)	327, 1446, 1539, 1686, 1985
ZrmI	AGTACT	1 cut(s)	589
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.