Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007165

Physical Location & Seq

Genomic Coordinates Reverse (-)

6728455 .. 6734018

Gene Structure 5564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAGGTCGTCTTGCTCGGACAGAATTGACATTGCCGCCAACGCTCAGCGGCTCGATGTAGACCACCGGATTTCGCTGCGCATCTACTTCCGGATCGCCAACACTCTTCTTAAACAGGCTGATATATTTCGACAAGAGAGGAATATTATAGACCTTTATGTTATGCTCCTGAGGTTTTCGAGTTTGGCCACCGAGACGATACCATTTCATCGAGACTATAGAGCATCTGTTCAAATAGAAAAAGATATTTTGAAAAAGAAATTGTTGAATGCTCTCTGTGAGCTGGAGAAATTAAAGCCACTAGTGAAAGAGAAGAATGATGAGTTTAACAGGAGAAATGCATATCAAAACAATGGTTGGGGCAGTAATCATCAAATTCAAGCTCCTCCGAAGAAGCAAAATTTGATTAGTTATGACGTAAACAAGGCAGCGAAACCAGCTTCAAAAGTACAGGTCTATCAAAATCTAGGGACTCGACAGTTTTCATATGCCAGGCCTGTGGAGGAGCATATACGCAAATTATCCATAAATCTTCGACCTCCAAAGGAGGATACTCTTTCCAAACATTCAATTTTGGGTCCTAATGGGCTTTATGGAAAGTGGCAGCCACCTAGAACTGATATAGGGGTTCGCTATCCAAGCATTGTAGACTTGACTTCTCTTGAAATCCCAAGTCTGGAACAGTCCATTGAAGGGAAAAATACGACTGCAAGCAATTCAGAGCCTGAAAGGCCAAGTTTAGAACCCATTCGTACCCAGAGTAGTGATGATGTTCAGATTCCTAGTACTGAGGAACCTTCTCTTATTTCTTTTGAACCAATAGAACCTCCTGAACATACACAACTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAAGATTTGATCCCAGCAATTTCACCCCAAGTCTCTGCGGTAGAAAGTGAATTGGAGACTCTCTCATCAGATGAATTTCTTCGTGCTGAATCTCCCCTGCAATTGCACATTTCAACAACGATGATGGACCATTTCATGAAGTTGGCAAAGTCAAATACTAAAAAGAACTTAGAAACTTGTGGGATTCTGGCTGGTTCACTTAAAAACAGGAAGTTTTATGTTACAGCTCTCATCATACCAAAGCAAGAGGCAACAGAAAATTCTTGCCAAGCCACGCATGAAGAGGAAATATTTGAAGTTCAGGACAAGCGATCTCTCTTCCCTCTTGGCTGGATACATACTCATCCTACACAGTCTTGTTTCATGTCGTCGATTGATGTTCACACTCATTATTCATACCAGGACCTGAACCCAAGTTGTCTTCAATCAATTCAGAACATTATTTCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

446

Amino Acids

50.63

Weight (kDa)

6.52

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	10 - 100	1.7e-12	USP8 dimerisation domain
JAB	PF01398	326 - 434	2.9e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	345 - 427	1.8e-07	Prokaryotic homologs of the JAB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48790
fragaria_vesca	FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880
malus_domestica	MD06G1217700.v1.1 MD14G1227900.v1.1
prunus_persica	Prupe.5G222900_v2.0.a1
pyrus_communis	pycom06g19390 pycom14g18930
rosa_chinensis	RchiOBHm_Chr7g0185701
rosa_laevigata	RLG00000004893
rosa_multiflora	Rmu_sc0004909.1_g000002 Rmu_sc0008747.1_g000004 Rmu_sc0023648.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268720
rosa_rugosa	Rorug06G0470600 Rorug06G0470700
rosa_samantha	Rh7AG071800 Rh7BG076100 Rh7CG076100 Rh7DG076100
rosa_wichuraiana	Rw7G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	80
AccI	GTMKAC	2 cut(s)	60, 648
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	3 cut(s)	36, 49, 923
AclWI	GGATC	2 cut(s)	101, 889
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	4 cut(s)	375, 400, 959, 1144
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	5 cut(s)	450, 754, 787, 873, 885
AfiI	CCNNNNNNNGG	2 cut(s)	676, 693
AhlI	ACTAGT	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	491, 1284
AluBI	AGCT	4 cut(s)	283, 383, 440, 1112
AluI	AGCT	4 cut(s)	283, 383, 440, 1112
Alw26I	GTCTC	4 cut(s)	188, 207, 922, 935
AlwI	GGATC	2 cut(s)	101, 889
AlwNI	CAGNNNCTG	2 cut(s)	725, 1291
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	3 cut(s)	186, 494, 731
ApeKI	GCWGC	3 cut(s)	76, 428, 604
ApoI	RAATTY	4 cut(s)	375, 400, 959, 1144
Asp700I	GAANNNNTTC	2 cut(s)	747, 963
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	578, 1012, 1288
AsuHPI	GGTGA	1 cut(s)	900
AvaII	GGWCC	3 cut(s)	578, 1012, 1288
AxyI	CCTNAGG	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	1298
BbvI	GCAGC	3 cut(s)	63, 440, 616
BccI	CCATC	1 cut(s)	1003
BciT130I	CCWGG	2 cut(s)	493, 1286
BciVI	GTATCC	2 cut(s)	544, 1212
BcoDI	GTCTC	4 cut(s)	188, 207, 922, 935
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	5 cut(s)	302, 467, 612, 783, 1336
BfmI	CTRYAG	1 cut(s)	217
BfuI	GTATCC	2 cut(s)	544, 1212
BglI	GCCNNNNNGGC	1 cut(s)	730
BisI	GCNGC	5 cut(s)	36, 50, 77, 429, 605
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	37, 51, 78, 430, 606
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	493, 1286
Bme18I	GGWCC	3 cut(s)	578, 1012, 1288
BmgT120I	GGNCC	3 cut(s)	578, 1012, 1288
BmiI	GGNNCC	2 cut(s)	579, 795
BmrFI	CCNGG	2 cut(s)	493, 1286
BmsI	GCATC	2 cut(s)	90, 233
BpiI	GAAGAC	1 cut(s)	1298
BplI	GAGNNNNNCTC	2 cut(s)	932, 964
BpmI	CTGGAG	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	45
BsaWI	WCCGGW	2 cut(s)	66, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	676, 693
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	493, 1286
BseGI	GGATG	1 cut(s)	1228
BseLI	CCNNNNNNNGG	2 cut(s)	676, 693
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	3 cut(s)	59, 161, 780
BseRI	GAGGAG	3 cut(s)	375, 518, 852
BseXI	GCAGC	3 cut(s)	63, 440, 616
BseYI	CCCAGC	1 cut(s)	898
BshFI	GGCC	3 cut(s)	188, 496, 733
BsiSI	CCGG	2 cut(s)	67, 91
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	676, 693
BsmAI	GTCTC	4 cut(s)	188, 207, 922, 935
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	188, 496, 733
Bsp13I	TCCGGA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	93, 894, 1196
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	3 cut(s)	36, 49, 923
BspANI	GGCC	3 cut(s)	188, 496, 733
BspCNI	CTCAG	3 cut(s)	58, 162, 781
BspEI	TCCGGA	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	2 cut(s)	579, 795
BspPI	GGATC	2 cut(s)	101, 889
BsrDI	GCAATG	1 cut(s)	30
BssMI	GATC	3 cut(s)	93, 894, 1196
Bst2UI	CCWGG	2 cut(s)	493, 1286
Bst4CI	ACNGT	3 cut(s)	480, 684, 1239
Bst6I	CTCTTC	3 cut(s)	111, 1161, 1208
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	4 cut(s)	45, 170, 789, 1054
BstF5I	GGATG	1 cut(s)	1228
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	96, 897, 1199
BstMAI	GTCTC	4 cut(s)	188, 207, 922, 935
BstMBI	GATC	3 cut(s)	93, 894, 1196
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 437, 639, 730
BstNI	CCWGG	2 cut(s)	493, 1286
BstSCI	CCNGG	2 cut(s)	491, 1284
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	63, 440, 616
BstV2I	GAAGAC	1 cut(s)	1298
BstXI	CCANNNNNNTGG	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	170
BsuI	GTATCC	2 cut(s)	544, 1212
BsuRI	GGCC	3 cut(s)	188, 496, 733
BtsCI	GGATG	1 cut(s)	1228
Cac8I	GCNNGC	1 cut(s)	712
CaiI	CAGNNNCTG	2 cut(s)	725, 1291
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	578, 1012, 1288
Csp6I	GTAC	5 cut(s)	449, 753, 786, 872, 884
CviAII	CATG	3 cut(s)	1021, 1163, 1249
CviQI	GTAC	5 cut(s)	449, 753, 786, 872, 884
DdeI	CTNAG	4 cut(s)	45, 170, 789, 1054
DpnI	GATC	3 cut(s)	95, 896, 1198
DpnII	GATC	3 cut(s)	93, 894, 1196
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	3 cut(s)	111, 1161, 1208
EarI	CTCTTC	3 cut(s)	111, 1161, 1208
Eco147I	AGGCCT	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	578, 1012, 1288
Eco57I	CTGAAG	1 cut(s)	900
Eco81I	CCTNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	578, 1288
EcoRII	CCWGG	2 cut(s)	491, 1284
EcoT22I	ATGCAT	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	1024, 1166, 1252
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	1020, 1162, 1248
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	2 cut(s)	60, 648
Fnu4HI	GCNGC	5 cut(s)	36, 50, 77, 429, 605
FokI	GGATG	1 cut(s)	1215
Fsp4HI	GCNGC	5 cut(s)	36, 50, 77, 429, 605
FspBI	CTAG	5 cut(s)	302, 467, 612, 783, 1336
FspI	TGCGCA	1 cut(s)	80
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	36, 50, 77, 429, 605
GsaI	CCCAGC	1 cut(s)	902
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	188, 496, 733
HapII	CCGG	2 cut(s)	67, 91
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	1024, 1166, 1252
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	5 cut(s)	472, 778, 943, 974, 1069
HpaII	CCGG	2 cut(s)	67, 91
HphI	GGTGA	1 cut(s)	900
Hpy166II	GTNNAC	5 cut(s)	61, 421, 649, 1082, 1267
Hpy188I	TCNGA	7 cut(s)	19, 390, 721, 777, 851, 955, 1320
Hpy188III	TCNNGA	8 cut(s)	91, 169, 212, 662, 677, 830, 1021, 1187
Hpy8I	GTNNAC	5 cut(s)	61, 421, 649, 1082, 1267
Hpy99I	CGWCG	1 cut(s)	1258
HpyAV	CCTTC	3 cut(s)	686, 807, 867
HpyCH4III	ACNGT	3 cut(s)	480, 684, 1239
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	4 cut(s)	341, 710, 985, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 437, 639, 730
HpyF3I	CTNAG	4 cut(s)	45, 170, 789, 1054
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	1024, 1166, 1252
HspAI	GCGC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	93, 894, 1196
LmnI	GCTCC	3 cut(s)	171, 388, 505
Lsp1109I	GCAGC	3 cut(s)	63, 440, 616
LweI	GCATC	2 cut(s)	90, 233
MaeI	CTAG	5 cut(s)	302, 467, 612, 783, 1336
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	1105
MalI	GATC	3 cut(s)	95, 896, 1198
MboI	GATC	3 cut(s)	93, 894, 1196
MboII	GAAGA	8 cut(s)	98, 325, 403, 524, 956, 1178, 1195, 1298
MfeI	CAATTG	1 cut(s)	986
MlsI	TGGCCA	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	466, 937
Mox20I	TGGCCA	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	90
MroXI	GAANNNNTTC	2 cut(s)	747, 963
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	4 cut(s)	111, 293, 327, 1086
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	2 cut(s)	67, 91
MspR9I	CCNGG	2 cut(s)	493, 1286
MunI	CAATTG	1 cut(s)	986
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	2 cut(s)	493, 1286
MwoI	GCNNNNNNNGC	4 cut(s)	41, 437, 639, 730
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	3 cut(s)	93, 894, 1196
NlaIII	CATG	3 cut(s)	1024, 1166, 1252
NlaIV	GGNNCC	2 cut(s)	579, 795
NsbI	TGCGCA	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	343
PagI	TCATGA	1 cut(s)	1020
PceI	AGGCCT	1 cut(s)	496
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	2 cut(s)	747, 963
PfeI	GAWTC	3 cut(s)	778, 974, 1069
PkrI	GCNGC	5 cut(s)	37, 51, 78, 430, 606
PleI	GAGTC	2 cut(s)	466, 937
PpsI	GAGTC	2 cut(s)	466, 937
PpuMI	RGGWCCY	2 cut(s)	578, 1288
Psp5II	RGGWCCY	2 cut(s)	578, 1288
Psp6I	CCWGG	2 cut(s)	491, 1284
PspFI	CCCAGC	1 cut(s)	898
PspGI	CCWGG	2 cut(s)	491, 1284
PspN4I	GGNNCC	2 cut(s)	579, 795
PspPI	GGNCC	3 cut(s)	578, 1012, 1288
PspPPI	RGGWCCY	2 cut(s)	578, 1288
PstNI	CAGNNNCTG	2 cut(s)	725, 1291
RsaI	GTAC	5 cut(s)	450, 754, 787, 873, 885
RsaNI	GTAC	5 cut(s)	449, 753, 786, 872, 884
SaqAI	TTAA	4 cut(s)	111, 293, 327, 1086
SatI	GCNGC	5 cut(s)	36, 50, 77, 429, 605
Sau3AI	GATC	3 cut(s)	93, 894, 1196
Sau96I	GGNCC	3 cut(s)	578, 1012, 1288
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	2 cut(s)	466, 937
ScrFI	CCNGG	2 cut(s)	493, 1286
SfaNI	GCATC	2 cut(s)	90, 233
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	3 cut(s)	578, 1012, 1288
SpeI	ACTAGT	1 cut(s)	301
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	3 cut(s)	36, 49, 923
SspI	AATATT	2 cut(s)	145, 1176
SspMI	CTAG	5 cut(s)	302, 467, 612, 783, 1336
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	491, 1284
TaaI	ACNGT	3 cut(s)	480, 684, 1239
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	7 cut(s)	54, 130, 179, 211, 475, 535, 1256
TatI	WGTACW	4 cut(s)	448, 785, 871, 883
TauI	GCSGC	2 cut(s)	38, 52
TfiI	GAWTC	3 cut(s)	778, 974, 1069
Tru1I	TTAA	4 cut(s)	111, 293, 327, 1086
Tru9I	TTAA	4 cut(s)	111, 293, 327, 1086
TseI	GCWGC	3 cut(s)	76, 428, 604
TspDTI	ATGAA	8 cut(s)	197, 474, 972, 1009, 1037, 1179, 1237, 1269
VpaK11BI	GGWCC	3 cut(s)	578, 1012, 1288
XapI	RAATTY	4 cut(s)	375, 400, 959, 1144
XmiI	GTMKAC	2 cut(s)	60, 648
XmnI	GAANNNNTTC	2 cut(s)	747, 963
XspI	CTAG	5 cut(s)	302, 467, 612, 783, 1336
ZrmI	AGTACT	1 cut(s)	787
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.