Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007165

Physical Location & Seq

Genomic Coordinates Reverse (-)

5115093 .. 5121347

Gene Structure 6255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAGGTCGTCGTCGTCGTCTTGCTCGGATAGAATAGACATTGCCGCCAACGCTCAGAGGCTCGATGTCGACCATCGGATTTCGCTGCGTATCTACTTTCGGATCGCTAACACTCTTCTCAAACAGGCTGATATATTTCGACAAGAGAGGAATATTATAGACCTTTATGTCATGCTCCTAAGATTTTCGAGTTTGGCCTCCGAGACGATACCGTGTCATCGAGACTATAGAACATCCGTTCAAAGTGAAAAGGATATTTTGAAAATGAAATTGTTGAATGCTCTCTGTGAACTGGAGAAATTAAAGCCAGCAGTGAAACAGAAGAATGATGAGTTTAACAGGAGAAATGCATATCAAAACAACGGGTGGGGCCATAATCATCAAATTCAAGCTCCTCCGAAGAAGCAAAATTTGATTAGTTATGACATAAACAAGGCAGCAAATCCAGCTTCAAAAGCACAGTTCTATCAAAATCCAGGGACTCAGTTTTCATATGCCAGGCCCATGGAGGAGCAATTTCGCAAACTATCCATAAATCTTCGGCCTCCAAAGGTGGATACTCTTTCCAAACATTCAATTTTGGGCCCGAATGGGCTTTATGGGCAGTGGCAGCCACCTAAAATTGATATAGGGGTTCAATATCCAAGCATTGTAGACTTGACTCCTCTTGAAATCCCAAGTCTGGAACAGTCCATAGAAGGCAAAAATGCGACTTTAAGCAATTCGGAACATGAAAGACCAAGTTTAGAACCGATTCCCACCCAGAGTAGTAACGATGGTCAGATACCTCGTACTGAGGAACCTTCCCTTATTTCCTTCGAATCAATAGAACCTCCTGAACATGCACAACTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTGCAAGATTTGATCCCAGCAATTTCACCCCAAGTCTCTGCGGTAGAAAGTGAATTGGAGACTCTGTCATCAGATGAATTTCTTCGTGCTGAATCTCCCCTACAATTGCACATTTCAACAACGATGATGGATCATTTCTTGAAGTTAGCAAAGTCAAATACTAAAAAGGACTTAGAAACTTGTGGCATTCTAGCTGGTTCACTTAAAAACAGGAAGTTTTATGTTACAGCTCTCATCATACCAAAGCAAGAGTCAACGGCAAATTCTTGCCAAGCCACGCATGAAGAGGAGATATTTGAAGTTCAGGACAAACGATCTCTCTTCCCTCTAGGCTGGATACATGTGAGTATCTTGGGTTTCAATCAGTGGGCAATTCTTATTTGTTGCATTCACTATAAATGTGCACTTCTTTCGTTAATAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

437

Amino Acids

49.5

Weight (kDa)

6.87

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	13 - 107	2.6e-12	USP8 dimerisation domain
JAB	PF01398	328 - 410	3.8e-07	JAB1/Mov34/MPN/PAD-1 ubiquitin protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48790
fragaria_vesca	FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880
malus_domestica	MD06G1217700.v1.1 MD14G1227900.v1.1
prunus_persica	Prupe.5G222900_v2.0.a1
pyrus_communis	pycom06g19390 pycom14g18930
rosa_chinensis	RchiOBHm_Chr7g0185701
rosa_laevigata	RLG00000004893
rosa_multiflora	Rmu_sc0004909.1_g000002 Rmu_sc0008747.1_g000004 Rmu_sc0023648.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268720
rosa_rugosa	Rorug06G0470600 Rorug06G0470700
rosa_samantha	Rh7AG071800 Rh7BG076100 Rh7CG076100 Rh7DG076100
rosa_wichuraiana	Rw7G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AccI	GTMKAC	2 cut(s)	69, 654
AciI	CCGC	2 cut(s)	45, 929
AclWI	GGATC	3 cut(s)	110, 895, 1026
AcsI	RAATTY	4 cut(s)	384, 409, 965, 1150
AcuI	CTGAAG	1 cut(s)	906
AfaI	GTAC	2 cut(s)	793, 879
AfiI	CCNNNNNNNGG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	1228
AjnI	CCWGG	2 cut(s)	475, 497
AluBI	AGCT	4 cut(s)	392, 449, 1082, 1118
AluI	AGCT	4 cut(s)	392, 449, 1082, 1118
Alw21I	GWGCWC	1 cut(s)	1294
Alw26I	GTCTC	4 cut(s)	197, 216, 928, 941
Alw44I	GTGCAC	1 cut(s)	1290
AlwI	GGATC	3 cut(s)	110, 895, 1026
AoxI	GGCC	5 cut(s)	195, 370, 500, 542, 583
ApaI	GGGCCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	1290
ApeKI	GCWGC	3 cut(s)	85, 437, 610
ApoI	RAATTY	4 cut(s)	384, 409, 965, 1150
ArsI	GACNNNNNNTTYG	2 cut(s)	1124, 1156
Asp700I	GAANNNNTTC	2 cut(s)	753, 969
AspS9I	GGNCC	4 cut(s)	370, 501, 583, 584
AsuHPI	GGTGA	1 cut(s)	906
AsuII	TTCGAA	1 cut(s)	819
BaeGI	GKGCMC	2 cut(s)	587, 1294
BanII	GRGCYC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	1294
BbvI	GCAGC	3 cut(s)	72, 449, 622
BccI	CCATC	3 cut(s)	81, 770, 1009
BceAI	ACGGC	1 cut(s)	1161
BcgI	CGANNNNNNTGC	1 cut(s)	1281
BciT130I	CCWGG	2 cut(s)	477, 499
BciVI	GTATCC	2 cut(s)	550, 1218
BcoDI	GTCTC	4 cut(s)	197, 216, 928, 941
BfaI	CTAG	2 cut(s)	1079, 1217
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	2 cut(s)	550, 1218
BisI	GCNGC	4 cut(s)	45, 86, 438, 611
BlsI	GCNGC	4 cut(s)	46, 87, 439, 612
Bme1390I	CCNGG	2 cut(s)	477, 499
BmgT120I	GGNCC	4 cut(s)	370, 501, 583, 584
BmiI	GGNNCC	3 cut(s)	371, 585, 801
BmrFI	CCNGG	2 cut(s)	477, 499
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	476, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	477, 499
BseDI	CCNNGG	2 cut(s)	476, 504
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	68, 497, 786
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	5 cut(s)	384, 524, 654, 858, 1190
BseSI	GKGCMC	2 cut(s)	587, 1294
BseXI	GCAGC	3 cut(s)	72, 449, 622
BseYI	CCCAGC	1 cut(s)	904
BshFI	GGCC	5 cut(s)	197, 372, 502, 544, 585
BsiHKAI	GWGCWC	1 cut(s)	1294
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	4 cut(s)	197, 216, 928, 941
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	3 cut(s)	283, 1074, 1275
BsnI	GGCC	5 cut(s)	197, 372, 502, 544, 585
Bsp119I	TTCGAA	1 cut(s)	819
Bsp120I	GGGCCC	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	587, 1294
Bsp143I	GATC	4 cut(s)	102, 900, 1018, 1202
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	45, 929
BspANI	GGCC	5 cut(s)	197, 372, 502, 544, 585
BspCNI	CTCAG	3 cut(s)	67, 496, 787
BspLI	GGNNCC	3 cut(s)	371, 585, 801
BspPI	GGATC	3 cut(s)	110, 895, 1026
BspT104I	TTCGAA	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	476, 504
BssMI	GATC	4 cut(s)	102, 900, 1018, 1202
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	477, 499
Bst4CI	ACNGT	3 cut(s)	213, 462, 690
Bst6I	CTCTTC	3 cut(s)	120, 1167, 1214
BstBI	TTCGAA	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	5 cut(s)	54, 179, 483, 795, 1060
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	4 cut(s)	105, 903, 1021, 1205
BstMAI	GTCTC	4 cut(s)	197, 216, 928, 941
BstMBI	GATC	4 cut(s)	102, 900, 1018, 1202
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 446, 455, 601, 610
BstNI	CCWGG	2 cut(s)	477, 499
BstNSI	RCATGY	2 cut(s)	845, 1232
BstSCI	CCNGG	2 cut(s)	475, 497
BstSFI	CTRYAG	1 cut(s)	226
BstSLI	GKGCMC	2 cut(s)	587, 1294
BstV1I	GCAGC	3 cut(s)	72, 449, 622
BstXI	CCANNNNNNTGG	1 cut(s)	505
BsuI	GTATCC	2 cut(s)	550, 1218
BsuRI	GGCC	5 cut(s)	197, 372, 502, 544, 585
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	2 cut(s)	318, 611
BtsIMutI	CAGTG	3 cut(s)	318, 611, 1259
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	4 cut(s)	370, 501, 583, 584
Csp6I	GTAC	2 cut(s)	792, 878
CviAII	CATG	6 cut(s)	172, 505, 731, 842, 1169, 1229
CviQI	GTAC	2 cut(s)	792, 878
DdeI	CTNAG	5 cut(s)	54, 179, 483, 795, 1060
DpnI	GATC	4 cut(s)	104, 902, 1020, 1204
DpnII	GATC	4 cut(s)	102, 900, 1018, 1202
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	3 cut(s)	120, 1167, 1214
EarI	CTCTTC	3 cut(s)	120, 1167, 1214
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	475, 497
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	6 cut(s)	175, 508, 734, 845, 1172, 1232
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	6 cut(s)	171, 504, 730, 841, 1168, 1228
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	2 cut(s)	69, 654
Fnu4HI	GCNGC	4 cut(s)	45, 86, 438, 611
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	4 cut(s)	45, 86, 438, 611
FspBI	CTAG	2 cut(s)	1079, 1217
GluI	GCNGC	4 cut(s)	45, 86, 438, 611
GsaI	CCCAGC	1 cut(s)	908
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	5 cut(s)	197, 372, 502, 544, 585
Hin1II	CATG	6 cut(s)	175, 508, 734, 845, 1172, 1232
HincII	GTYRAC	2 cut(s)	70, 1143
HindII	GTYRAC	2 cut(s)	70, 1143
HinfI	GANTC	7 cut(s)	481, 661, 754, 821, 949, 980, 1139
HphI	GGTGA	1 cut(s)	906
Hpy166II	GTNNAC	6 cut(s)	70, 290, 655, 1088, 1143, 1292
Hpy188III	TCNNGA	6 cut(s)	221, 668, 683, 836, 1027, 1193
Hpy8I	GTNNAC	6 cut(s)	70, 290, 655, 1088, 1143, 1292
Hpy99I	CGWCG	3 cut(s)	13, 16, 19
HpyAV	CCTTC	4 cut(s)	692, 813, 826, 873
HpyCH4III	ACNGT	3 cut(s)	213, 462, 690
HpyCH4V	TGCA	6 cut(s)	350, 845, 892, 997, 1275, 1292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 446, 455, 601, 610
HpyF3I	CTNAG	5 cut(s)	54, 179, 483, 795, 1060
Hsp92II	CATG	6 cut(s)	175, 508, 734, 845, 1172, 1232
Kzo9I	GATC	4 cut(s)	102, 900, 1018, 1202
LmnI	GCTCC	3 cut(s)	180, 397, 511
Lsp1109I	GCAGC	3 cut(s)	72, 449, 622
MaeI	CTAG	2 cut(s)	1079, 1217
MaeIII	GTNAC	2 cut(s)	770, 1111
MalI	GATC	4 cut(s)	104, 902, 1020, 1204
MboI	GATC	4 cut(s)	102, 900, 1018, 1202
MboII	GAAGA	7 cut(s)	107, 334, 412, 530, 962, 1184, 1201
MfeI	CAATTG	1 cut(s)	992
MhlI	GDGCHC	2 cut(s)	587, 1294
MlyI	GAGTC	4 cut(s)	475, 655, 943, 1148
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	2 cut(s)	753, 969
MseI	TTAA	5 cut(s)	302, 336, 716, 1092, 1304
MspR9I	CCNGG	2 cut(s)	477, 499
MunI	CAATTG	1 cut(s)	992
Mva1269I	GAATGC	3 cut(s)	283, 1074, 1275
MvaI	CCWGG	2 cut(s)	477, 499
MwoI	GCNNNNNNNGC	5 cut(s)	50, 446, 455, 601, 610
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	4 cut(s)	102, 900, 1018, 1202
NlaIII	CATG	6 cut(s)	175, 508, 734, 845, 1172, 1232
NlaIV	GGNNCC	3 cut(s)	371, 585, 801
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	845, 1232
NspV	TTCGAA	1 cut(s)	819
PciI	ACATGT	1 cut(s)	1228
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	3 cut(s)	283, 1074, 1275
PdmI	GAANNNNTTC	2 cut(s)	753, 969
PfeI	GAWTC	3 cut(s)	754, 821, 980
PflFI	GACNNNGTC	1 cut(s)	952
PkrI	GCNGC	4 cut(s)	46, 87, 439, 612
PleI	GAGTC	4 cut(s)	475, 655, 943, 1147
PpsI	GAGTC	4 cut(s)	475, 655, 943, 1147
PscI	ACATGT	1 cut(s)	1228
Psp6I	CCWGG	2 cut(s)	475, 497
PspFI	CCCAGC	1 cut(s)	904
PspGI	CCWGG	2 cut(s)	475, 497
PspN4I	GGNNCC	3 cut(s)	371, 585, 801
PspOMI	GGGCCC	1 cut(s)	583
PspPI	GGNCC	4 cut(s)	370, 501, 583, 584
PsyI	GACNNNGTC	1 cut(s)	952
RsaI	GTAC	2 cut(s)	793, 879
RsaNI	GTAC	2 cut(s)	792, 878
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	5 cut(s)	302, 336, 716, 1092, 1304
SatI	GCNGC	4 cut(s)	45, 86, 438, 611
Sau3AI	GATC	4 cut(s)	102, 900, 1018, 1202
Sau96I	GGNCC	4 cut(s)	370, 501, 583, 584
SchI	GAGTC	4 cut(s)	475, 655, 943, 1148
ScrFI	CCNGG	2 cut(s)	477, 499
SduI	GDGCHC	2 cut(s)	587, 1294
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	819
SsiI	CCGC	2 cut(s)	45, 929
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	1079, 1217
StyD4I	CCNGG	2 cut(s)	475, 497
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	213, 462, 690
TaqI	TCGA	6 cut(s)	63, 69, 139, 188, 220, 819
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	754, 821, 980
Tru1I	TTAA	5 cut(s)	302, 336, 716, 1092, 1304
Tru9I	TTAA	5 cut(s)	302, 336, 716, 1092, 1304
TscAI	CASTG	3 cut(s)	318, 611, 1259
TseI	GCWGC	3 cut(s)	85, 437, 610
TspDTI	ATGAA	5 cut(s)	281, 480, 747, 978, 1185
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	318, 611, 1259
Tth111I	GACNNNGTC	1 cut(s)	952
VneI	GTGCAC	1 cut(s)	1290
XapI	RAATTY	4 cut(s)	384, 409, 965, 1150
XceI	RCATGY	2 cut(s)	845, 1232
XmiI	GTMKAC	2 cut(s)	69, 654
XmnI	GAANNNNTTC	2 cut(s)	753, 969
XspI	CTAG	2 cut(s)	1079, 1217
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.