Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023648.1

Orthogroup ID

OG0007165

Physical Location & Seq

Genomic Coordinates Forward (+)

22 .. 1673

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023648.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtcgtcgattgatgttcacacgcattattcttatcagattatgttgcccgaagctgttgcaattgtcatggcaccaagagatagtgcaagaacccatggcattttccgattgacaaccccgggtggcatgtcagtcattagaaagtgcccgcagcgtggttttcattcacatgatcagccaccagatggtgggccaatttacaacacctcccaaaagaagacagctatggttgggcacatttactacggcaagatcaagctcagaagctgtttctacattatcgatgcgggattgggcctcacgaaattggttcttaagatgtgtagtgtgaaatcagtgttgatgggggtcaagcatctgactctcgccgaccttgttagaggaatcactgatgttggagctatggcagtctctgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

141

Amino Acids

15.36

Weight (kDa)

9.64

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48790
fragaria_vesca	FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880 FvH4_5g11880
malus_domestica	MD06G1217700.v1.1 MD14G1227900.v1.1
prunus_persica	Prupe.5G222900_v2.0.a1
pyrus_communis	pycom06g19390 pycom14g18930
rosa_chinensis	RchiOBHm_Chr7g0185701
rosa_laevigata	RLG00000004893
rosa_multiflora	Rmu_sc0004909.1_g000002 Rmu_sc0008747.1_g000004 Rmu_sc0023648.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268720
rosa_rugosa	Rorug06G0470600 Rorug06G0470700
rosa_samantha	Rh7AG071800 Rh7BG076100 Rh7CG076100 Rh7DG076100
rosa_wichuraiana	Rw7G006340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	2 cut(s)	188, 191
AciI	CCGC	2 cut(s)	152, 290
AfiI	CCNNNNNNNGG	3 cut(s)	158, 188, 191
AflII	CTTAAG	1 cut(s)	317
AluBI	AGCT	5 cut(s)	56, 227, 262, 270, 404
AluI	AGCT	5 cut(s)	56, 227, 262, 270, 404
Alw26I	GTCTC	1 cut(s)	418
AlwNI	CAGNNNCTG	2 cut(s)	270, 416
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	194, 298
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	194, 298
AsuC2I	CCSGG	2 cut(s)	122, 123
AvaI	CYCGRG	1 cut(s)	121
BaeGI	GKGCMC	2 cut(s)	152, 240
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	182, 340
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	122, 123
BcoDI	GTCTC	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	122, 123
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	194, 298
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	122, 123
BmsI	GCATC	2 cut(s)	277, 367
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	122, 123
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	97, 120, 121
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 188, 191
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	97, 120, 121
BseLI	CCNNNNNNNGG	3 cut(s)	158, 188, 191
BseMII	CTCAG	1 cut(s)	277
BseSI	GKGCMC	2 cut(s)	152, 240
BseXI	GCAGC	1 cut(s)	166
BshFI	GGCC	2 cut(s)	196, 300
BshNI	GGYRCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	158, 188, 191
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	196, 300
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	152, 240
Bsp143I	GATC	2 cut(s)	175, 255
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	152, 290
BspANI	GGCC	2 cut(s)	196, 300
BspCNI	CTCAG	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	73
BspTI	CTTAAG	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	97, 120, 121
BssMI	GATC	2 cut(s)	175, 255
BssT1I	CCWWGG	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	178, 258
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	175, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	120, 121
BstSLI	GKGCMC	2 cut(s)	152, 240
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	196, 300
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	345, 390
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	2 cut(s)	270, 416
Cfr13I	GGNCC	2 cut(s)	194, 298
Cfr9I	CCCGGG	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	4 cut(s)	70, 98, 130, 173
CviJI	RGCY	8 cut(s)	56, 181, 196, 227, 262, 270, 300, 404
CviKI_1	RGCY	8 cut(s)	56, 181, 196, 227, 262, 270, 300, 404
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	2 cut(s)	177, 257
DpnII	GATC	2 cut(s)	175, 255
Eco130I	CCWWGG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	73, 101, 133, 176
FaiI	YATR	7 cut(s)	44, 71, 99, 131, 174, 230, 407
FatI	CATG	4 cut(s)	69, 97, 129, 172
FauI	CCCGC	2 cut(s)	159, 283
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	196, 300
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	4 cut(s)	73, 101, 133, 176
HinfI	GANTC	2 cut(s)	364, 387
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	39, 110, 266, 363
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	62, 89, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	73, 101, 133, 176
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 255
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	2 cut(s)	135, 198
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	277, 367
MalI	GATC	2 cut(s)	177, 257
MboI	GATC	2 cut(s)	175, 255
MboII	GAAGA	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	152, 240
MluCI	AATT	4 cut(s)	63, 198, 308, 420
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	220, 311, 377
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	171
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	122, 123
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	416
NciI	CCSGG	2 cut(s)	122, 123
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	2 cut(s)	175, 255
NlaIII	CATG	4 cut(s)	73, 101, 133, 176
NlaIV	GGNNCC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	387
PflMI	CCANNNNNTGG	2 cut(s)	188, 191
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	194, 298
PstNI	CAGNNNCTG	2 cut(s)	270, 416
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	175, 255
Sau96I	GGNCC	2 cut(s)	194, 298
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	122, 123
SduI	GDGCHC	2 cut(s)	152, 240
SetI	ASST	7 cut(s)	58, 212, 229, 264, 272, 378, 406
SfaNI	GCATC	2 cut(s)	277, 367
SmaI	CCCGGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	63, 198, 308, 420
SsiI	CCGC	2 cut(s)	152, 290
StyD4I	CCNGG	2 cut(s)	120, 121
StyI	CCWWGG	1 cut(s)	97
TaqI	TCGA	2 cut(s)	8, 285
TasI	AATT	4 cut(s)	63, 198, 308, 420
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	345, 397
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	155
TspMI	CCCGGG	1 cut(s)	121
TspRI	CASTG	2 cut(s)	345, 397
Van91I	CCANNNNNTGG	2 cut(s)	188, 191
Vha464I	CTTAAG	1 cut(s)	317
XceI	RCATGY	1 cut(s)	133
XmaI	CCCGGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.