FvH4_5g12220

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010568
Physical Location & Seq
Reverse (-)
6871895 .. 6874610
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12220.t1

Sequence Viewer

Length: 1194 bp
ATGCGAAACCAACTTCTTCTGCAACTTCCTTTTGTACTGATACTGATATTCATTGTCTCCTTCAAACTAACACATGCCAAGTCCACAATAGAACCATGCACCTCTTCAGACTCCTGCCCTTCTCTCCTCTCCTATGTTCTCCCTTGGGACTCAAAGCTCTCCGAGATCGCTTACCGCTTTCAGGTAAACGTTTTTGATGTAATGGCAGCCAACTCCATCAACATTACAGCATCATCAGTGGGGAACCAAATCTTCGGTGCAAGGTCTCAACTCAAAGTTCCCATTTCATGTTCATGTGTGGATGGTATCAGGAGGGTAATGCTATCTTACATAGTTCGAGCAGCTGATAGCTTGGATCTGATATCAGAAGGTTATGGCAGGCTTGTGAGTGGTGAACAACTTGGGACTCTAAATGGGATTAGCCCCAATAATCCATTGACGAGTGGTCAAAGCATTTTGGTGCAGTTGCCATGTACTTGCTTTAACAATAGTAACAATGGCGTTGCTTCAGTGTTTATGTCGTATGTGGTGCAGAGTGGGGAGAGCTTGAGCAACATTGGAGTGGAGTTTGGGGCAACTGTGATGGAGTTGGTCGGCATTAATGGGCTTGACCAACCGACGGTTGACCCTGGAGACATAATGGCTATTCCAATTTCAGCATGTTCATCAGCAAATCTTAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCATATGCATTAACTGCCAGCAACTGCATCAAGTGCATTTGTAGGCCAAGCACTCTCAACTTGCAGTGTTTCCCATCTGGGATTGTCAATGCATGCTCACATTTGCAATGCAAAGGATCTAATCTTTTCATTGGAGATGTTTCCATTAACCGAACGGCTACTGGTTGTAATGTCAGCACTTGTGTGTATCGAGGCCACAATGGTGGCAAAATTTTCAGGGGCTTATTGAACTCTTCTCATTCCCATTGCTCAGATGACGAAGATTACAGCATAGTTTCACCAGTGGCATCGCCTGAAAATCCTACAGTCCCATACATATCACTACCTCCTTCACAATCACCCTTTCCTAATCGAACTATTGGAACAGATGCCTACGGTCCTTCAAGTAGACTAAATCCCAGTAGTGCGCCCAAGTACGGCAGATTGGTTAGTGAAGCTCCATATTATAGTTTGTGGGTTGTCCTCTGCCTATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

398

Amino Acids

42.59

Weight (kDa)

5.95

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 175 - 217 4.5e-07 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1102
AciI CCGC 1 cut(s) 175
AclI AACGTT 1 cut(s) 189
AclWI GGATC 2 cut(s) 363, 838
AcsI RAATTY 1 cut(s) 924
AcuI CTGAAG 2 cut(s) 90, 492
AfaI GTAC 4 cut(s) 36, 475, 686, 1130
AfiI CCNNNNNNNGG 3 cut(s) 181, 619, 1130
AgsI TTSAA 3 cut(s) 64, 943, 1098
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 1 cut(s) 628
AleI CACNNNNGTG 2 cut(s) 896, 915
AluBI AGCT 6 cut(s) 157, 344, 351, 546, 696, 1151
AluI AGCT 6 cut(s) 157, 344, 351, 546, 696, 1151
Alw26I GTCTC 3 cut(s) 61, 270, 627
AlwI GGATC 2 cut(s) 363, 838
AlwNI CAGNNNCTG 1 cut(s) 738
AoxI GGCC 2 cut(s) 758, 907
ApeKI GCWGC 2 cut(s) 206, 341
ApoI RAATTY 1 cut(s) 924
AseI ATTAAT 1 cut(s) 600
AspLEI GCGC 1 cut(s) 1123
AspS9I GGNCC 1 cut(s) 1091
AsuHPI GGTGA 3 cut(s) 404, 984, 1044
AvaII GGWCC 1 cut(s) 1091
BbvI GCAGC 2 cut(s) 218, 353
BccI CCATC 4 cut(s) 224, 296, 577, 796
BceAI ACGGC 2 cut(s) 885, 1147
BciT130I CCWGG 1 cut(s) 630
BcoDI GTCTC 3 cut(s) 61, 270, 627
BfmI CTRYAG 1 cut(s) 1017
BisI GCNGC 2 cut(s) 207, 342
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 1091
BmeRI GACNNNNNGTC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 1091
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 4 cut(s) 239, 750, 1010, 1072
BmuI ACTGGG 1 cut(s) 1107
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 143, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 619, 1130
Bse1I ACTGG 4 cut(s) 686, 880, 995, 1113
Bse3DI GCAATG 2 cut(s) 827, 958
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 143, 628
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 181, 619, 1130
BseMI GCAATG 2 cut(s) 827, 958
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 4 cut(s) 686, 880, 995, 1113
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 218, 353
BsgI GTGCAG 2 cut(s) 482, 551
BshFI GGCC 2 cut(s) 760, 909
BslFI GGGAC 3 cut(s) 161, 418, 1007
BslI CCNNNNNNNGG 3 cut(s) 181, 619, 1130
BsmAI GTCTC 3 cut(s) 61, 270, 627
BsmFI GGGAC 3 cut(s) 161, 418, 1007
BsnI GGCC 2 cut(s) 760, 909
Bso31I GGTCTC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 165, 355, 830
BspACI CCGC 1 cut(s) 175
BspANI GGCC 2 cut(s) 760, 909
BspCNI CTCAG 1 cut(s) 977
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 2 cut(s) 363, 838
BspTNI GGTCTC 1 cut(s) 270
BsrDI GCAATG 2 cut(s) 827, 958
BsrI ACTGG 4 cut(s) 686, 880, 995, 1113
BssECI CCNNGG 2 cut(s) 143, 628
BssMI GATC 3 cut(s) 165, 355, 830
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 4 cut(s) 580, 622, 1021, 1091
Bst6I CTCTTC 2 cut(s) 109, 952
BstAPI GCANNNNNTGC 2 cut(s) 728, 747
BstC8I GCNNGC 3 cut(s) 380, 733, 808
BstDEI CTNAG 1 cut(s) 964
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 1123
BstKTI GATC 3 cut(s) 168, 358, 833
BstMAI GTCTC 3 cut(s) 61, 270, 627
BstMBI GATC 3 cut(s) 165, 355, 830
BstMWI GCNNNNNNNGC 2 cut(s) 728, 747
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 3 cut(s) 77, 663, 810
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 1017
BstV1I GCAGC 2 cut(s) 218, 353
BstX2I RGATCY 2 cut(s) 355, 830
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 2 cut(s) 355, 830
BsuRI GGCC 2 cut(s) 760, 909
BtgZI GCGATG 1 cut(s) 987
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 243, 516, 785, 1002
Cac8I GCNNGC 3 cut(s) 380, 733, 808
CaiI CAGNNNCTG 1 cut(s) 738
CfoI GCGC 1 cut(s) 1123
Cfr13I GGNCC 1 cut(s) 1091
Csp6I GTAC 4 cut(s) 35, 474, 685, 1129
CviAII CATG 7 cut(s) 74, 96, 288, 294, 471, 660, 807
CviQI GTAC 4 cut(s) 35, 474, 685, 1129
DdeI CTNAG 1 cut(s) 964
DpnI GATC 3 cut(s) 167, 357, 832
DpnII GATC 3 cut(s) 165, 355, 830
DriI GACNNNNNGTC 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 109, 952
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 2 cut(s) 109, 952
Eco130I CCWWGG 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 1091
Eco57I CTGAAG 2 cut(s) 90, 492
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 724, 808
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 7 cut(s) 77, 99, 291, 297, 474, 663, 810
FaqI GGGAC 3 cut(s) 161, 418, 1007
FatI CATG 7 cut(s) 73, 95, 287, 293, 470, 659, 806
FauNDI CATATG 1 cut(s) 718
FblI GTMKAC 1 cut(s) 1102
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 207, 342
GlaI GCGC 1 cut(s) 1122
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 760, 909
HhaI GCGC 1 cut(s) 1123
Hin1II CATG 7 cut(s) 77, 99, 291, 297, 474, 663, 810
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 110, 149, 406
HphI GGTGA 3 cut(s) 404, 984, 1044
Hpy166II GTNNAC 5 cut(s) 84, 187, 395, 625, 1103
Hpy188I TCNGA 6 cut(s) 109, 163, 360, 367, 967, 1193
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 5 cut(s) 84, 187, 395, 625, 1103
Hpy99I CGWCG 1 cut(s) 622
HpyAV CCTTC 5 cut(s) 70, 129, 362, 1053, 1104
HpyCH4III ACNGT 4 cut(s) 580, 622, 1021, 1091
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 728, 747
HpyF3I CTNAG 1 cut(s) 964
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 7 cut(s) 77, 99, 291, 297, 474, 663, 810
HspAI GCGC 1 cut(s) 1121
Kzo9I GATC 3 cut(s) 165, 355, 830
LmnI GCTCC 1 cut(s) 1156
Lsp1109I GCAGC 2 cut(s) 218, 353
LweI GCATC 4 cut(s) 239, 750, 1010, 1072
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 491
MalI GATC 3 cut(s) 167, 357, 832
MboI GATC 3 cut(s) 165, 355, 830
MboII GAAGA 6 cut(s) 8, 96, 244, 939, 986, 1180
MflI RGATCY 2 cut(s) 355, 830
MluCI AATT 2 cut(s) 651, 924
MlyI GAGTC 3 cut(s) 104, 143, 400
MnlI CCTC 6 cut(s) 112, 137, 306, 899, 1050, 1187
Mph1103I ATGCAT 2 cut(s) 724, 808
MseI TTAA 6 cut(s) 483, 600, 678, 698, 725, 861
MslI CAYNNNNRTG 5 cut(s) 292, 458, 560, 896, 915
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 2 cut(s) 728, 747
NdeI CATATG 1 cut(s) 718
NdeII GATC 3 cut(s) 165, 355, 830
NlaIII CATG 7 cut(s) 77, 99, 291, 297, 474, 663, 810
NlaIV GGNNCC 1 cut(s) 245
NsiI ATGCAT 2 cut(s) 724, 808
NspI RCATGY 3 cut(s) 77, 663, 810
OliI CACNNNNGTG 2 cut(s) 896, 915
PaeI GCATGC 1 cut(s) 810
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 3 cut(s) 104, 143, 400
PpsI GAGTC 3 cut(s) 104, 143, 400
PshBI ATTAAT 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 1091
PstNI CAGNNNCTG 1 cut(s) 738
PsuI RGATCY 2 cut(s) 355, 830
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 4 cut(s) 36, 475, 686, 1130
RsaNI GTAC 4 cut(s) 35, 474, 685, 1129
RseI CAYNNNNRTG 5 cut(s) 292, 458, 560, 896, 915
SaqAI TTAA 6 cut(s) 483, 600, 678, 698, 725, 861
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 3 cut(s) 165, 355, 830
Sau96I GGNCC 1 cut(s) 1091
SchI GAGTC 3 cut(s) 104, 143, 400
ScrFI CCNGG 1 cut(s) 630
SfaNI GCATC 4 cut(s) 239, 750, 1010, 1072
SfcI CTRYAG 1 cut(s) 1017
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 5 cut(s) 292, 458, 560, 896, 915
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
SphI GCATGC 1 cut(s) 810
Sse9I AATT 2 cut(s) 651, 924
SsiI CCGC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 4 cut(s) 580, 622, 1021, 1091
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 337, 904, 1066
TasI AATT 2 cut(s) 651, 924
TatI WGTACW 2 cut(s) 34, 473
Tru1I TTAA 6 cut(s) 483, 600, 678, 698, 725, 861
Tru9I TTAA 6 cut(s) 483, 600, 678, 698, 725, 861
TscAI CASTG 4 cut(s) 243, 516, 785, 1002
TseI GCWGC 2 cut(s) 206, 341
TspDTI ATGAA 6 cut(s) 40, 276, 282, 654, 705, 832
TspRI CASTG 4 cut(s) 243, 516, 785, 1002
VpaK11BI GGWCC 1 cut(s) 1091
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 1 cut(s) 924
XceI RCATGY 3 cut(s) 77, 663, 810
XmiI GTMKAC 1 cut(s) 1102
Zsp2I ATGCAT 2 cut(s) 724, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.