Rh7BG072900

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010568
Physical Location & Seq
Forward (+)
4933483 .. 4935220
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG072900.1

Sequence Viewer

Length: 663 bp
ATGAGAAACCAACTTCTTCTGCAACTTCCTTTTGTACTGATATTGATCTTCATTGTCTCCTCCAAACTAACACATGCCAAGTCCACAATAGAACCATGCACCTCTTCAGACTCCTGCCCTTCTCTCCTCTCCTATGTTCTCCCTTGGGACTCAAAGCTCTCCGAGATCGCTTACCGCTTCCAGGTAAACGTTTTTGATATAATGGCAGCCAACTCCATCAACATCACAACATCATCAGTGGGGAACCAAATTTTCGGTGCAAGGTCTCAACTTAAAGTGCCCATTTCGTGTCCATGTGTGGATGGTATCAGGAGGGTTTTGTTATCCTACATGGTTCGAGCAGCTGATAGCTTGGATCTGATATCAGAAGGTTATGGCAGGCTTGTGAGTGGTGAACAACTTAGGACTCTGAATGGGATTAGTCCCAAGAATCCATTGACGAGCGGTCAAAGCATTTTGGTGCAGTTGCCATGTACTTGCTTTAACAATAGTAACAATGGGGTTACTTCAGTGTTTATGTCATATGTGGTGCAGAGTGGGGAGAGCTTGAGCAACATTGGAGTGGAGTTTGGGTCAACAGTGATGGAGTTGGTAAACGTTAATGGGCTTGACCAACCGAGGGTTGACCCTGGAGACATATTGGCTATTCCAATTTCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

220

Amino Acids

23.75

Weight (kDa)

5.35

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 175 - 217 2e-09 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 444
AciI CCGC 2 cut(s) 175, 444
AclI AACGTT 2 cut(s) 189, 597
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 90, 492
AfaI GTAC 2 cut(s) 36, 475
AfiI CCNNNNNNNGG 3 cut(s) 181, 619, 656
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 2 cut(s) 180, 628
AluBI AGCT 4 cut(s) 157, 344, 351, 546
AluI AGCT 4 cut(s) 157, 344, 351, 546
Alw26I GTCTC 3 cut(s) 61, 270, 627
AlwI GGATC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 206, 341
ApoI RAATTY 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 218, 353
BccI CCATC 3 cut(s) 224, 296, 577
BciT130I CCWGG 2 cut(s) 182, 630
BcoDI GTCTC 3 cut(s) 61, 270, 627
BisI GCNGC 2 cut(s) 207, 342
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 2 cut(s) 182, 630
BmeRI GACNNNNNGTC 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 182, 630
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 143, 617, 628
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 619, 656
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 182, 630
BseDI CCNNGG 3 cut(s) 143, 617, 628
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 181, 619, 656
BseRI GAGGAG 2 cut(s) 49, 116
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 218, 353
BsgI GTGCAG 2 cut(s) 482, 551
BslFI GGGAC 2 cut(s) 161, 408
BslI CCNNNNNNNGG 3 cut(s) 181, 619, 656
BsmAI GTCTC 3 cut(s) 61, 270, 627
BsmFI GGGAC 2 cut(s) 161, 408
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 45, 165, 355
BspACI CCGC 2 cut(s) 175, 444
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 444
BssECI CCNNGG 3 cut(s) 143, 617, 628
BssMI GATC 3 cut(s) 45, 165, 355
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 182, 630
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 48, 168, 358
BstMAI GTCTC 3 cut(s) 61, 270, 627
BstMBI GATC 3 cut(s) 45, 165, 355
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 2 cut(s) 182, 630
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 180, 628
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 218, 353
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 3 cut(s) 243, 516, 585
Cac8I GCNNGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 35, 474
CviAII CATG 5 cut(s) 74, 96, 294, 331, 471
CviJI RGCY 8 cut(s) 157, 209, 344, 351, 382, 546, 607, 644
CviKI_1 RGCY 8 cut(s) 157, 209, 344, 351, 382, 546, 607, 644
CviQI GTAC 2 cut(s) 35, 474
DdeI CTNAG 1 cut(s) 401
DpnI GATC 3 cut(s) 47, 167, 357
DpnII GATC 3 cut(s) 45, 165, 355
DriI GACNNNNNGTC 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 90, 492
EcoRII CCWGG 2 cut(s) 180, 628
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 5 cut(s) 77, 99, 297, 334, 474
FaqI GGGAC 2 cut(s) 161, 408
FatI CATG 5 cut(s) 73, 95, 293, 330, 470
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 207, 342
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 651
Hin1II CATG 5 cut(s) 77, 99, 297, 334, 474
HincII GTYRAC 2 cut(s) 576, 625
HindII GTYRAC 2 cut(s) 576, 625
HinfI GANTC 4 cut(s) 110, 149, 406, 430
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 6 cut(s) 84, 187, 395, 576, 595, 625
Hpy188I TCNGA 5 cut(s) 109, 163, 360, 367, 411
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 6 cut(s) 84, 187, 395, 576, 595, 625
HpyAV CCTTC 2 cut(s) 129, 362
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 189, 597
HpyCH4V TGCA 5 cut(s) 22, 99, 260, 463, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 2 cut(s) 189, 597
Hsp92II CATG 5 cut(s) 77, 99, 297, 334, 474
Kzo9I GATC 3 cut(s) 45, 165, 355
LpnPI CCDG 8 cut(s) 127, 167, 194, 295, 364, 615, 642, 642
Lsp1109I GCAGC 2 cut(s) 218, 353
MaeII ACGT 2 cut(s) 189, 597
MaeIII GTNAC 2 cut(s) 491, 502
MalI GATC 3 cut(s) 47, 167, 357
MbiI CCGCTC 1 cut(s) 444
MboI GATC 3 cut(s) 45, 165, 355
MboII GAAGA 3 cut(s) 8, 40, 96
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 2 cut(s) 249, 651
MlyI GAGTC 3 cut(s) 104, 143, 400
MnlI CCTC 5 cut(s) 70, 112, 137, 306, 612
MseI TTAA 3 cut(s) 273, 483, 600
MslI CAYNNNNRTG 2 cut(s) 458, 560
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 182, 630
MvaI CCWGG 2 cut(s) 182, 630
MwoI GCNNNNNNNGC 1 cut(s) 450
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 45, 165, 355
NlaIII CATG 5 cut(s) 77, 99, 297, 334, 474
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 3 cut(s) 104, 143, 400
PpsI GAGTC 3 cut(s) 104, 143, 400
Psp1406I AACGTT 2 cut(s) 189, 597
Psp6I CCWGG 2 cut(s) 180, 628
PspGI CCWGG 2 cut(s) 180, 628
PspN4I GGNNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 36, 475
RsaNI GTAC 2 cut(s) 35, 474
RseI CAYNNNNRTG 2 cut(s) 458, 560
SaqAI TTAA 3 cut(s) 273, 483, 600
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 3 cut(s) 45, 165, 355
SchI GAGTC 3 cut(s) 104, 143, 400
ScrFI CCNGG 2 cut(s) 182, 630
SduI GDGCHC 1 cut(s) 282
SmiMI CAYNNNNRTG 2 cut(s) 458, 560
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 2 cut(s) 249, 651
SsiI CCGC 2 cut(s) 175, 444
StyD4I CCNGG 2 cut(s) 180, 628
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 192, 600
TaqI TCGA 1 cut(s) 337
TasI AATT 2 cut(s) 249, 651
TatI WGTACW 2 cut(s) 34, 473
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 273, 483, 600
Tru9I TTAA 3 cut(s) 273, 483, 600
TscAI CASTG 3 cut(s) 243, 516, 585
TseI GCWGC 2 cut(s) 206, 341
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 3 cut(s) 243, 516, 585
XapI RAATTY 1 cut(s) 249
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.