Prupe.5G220900_v2.0.a1

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010568
Physical Location & Seq
Forward (+)
17204838 .. 17207070
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G220900.2

Sequence Viewer

Length: 1197 bp
ATGATGAGATCAAACCAGCTTGAGCAACTTCTTGTTTTCATCTTCATTCTTTCCCCAACACTGCTAGTACTAGTAACACATGCCAAGTCCACAATAGAAGCATGCTCCTCTTCAGACTCCTGCACCTCTCTTCTCTCCTACATTGTCCCTTGGGACTCAAAATTCTCTGAGATTGCTTACCGCTTCCAAGTCAATGTCTTTGATGTCTTGGCTGCAAACTCCATTAACTTGACCATTCCATCACCAGGCAACCAAATTCTGCAGGCAAAATCTCTGCTCAAAATTCCCAATTCGTGTGCTTGCGTGGATGGGATCAGACGGTCTATAATAGCCTACACTGTGAAGGCAGCTGACAGCTTGGATCTGATATCACAAGGGTATGGGGGGCTTGTTAGTGCAGAACAAATTAGGACCATGAATGGGATTGGTCCCAAGAATCCATTGACGAGCGGGCAGAGCATTATGATACAGTTGCCATGTACGTGCTTTAACAATACCAACAATGGGGTTGCCTCTGTGTACATGTCATATGTGGTGCAGAGTGGGGAGAGCTTGAGCAGCATTGGACTGGAATTTGGCGCAACTTTGATGGAGTTGGTGAGCATCAACGGCCTCGATCAACCGCGGGTCGATCCCGGAGACACATTGGCTATTCCATTTTCAGCATGTTCATCAGCAAATCTGAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCAACCGCCTTAACTGCCAACGACTGCATAAAGTGCTTCTGCAGACCAAGCAGTCTCAAGTTGCATTGTTCTCCATCCGGCATTGTCGGCCCATGCTCTCATCTGCAGTGCAAAGAATCTGATCTTTTCATTGGCGATGTGTCTATCCAACAAAATGCTATTGGTTGTAATGTCAGCACATGTCTGTATCGAGGCCACAATGGCCGCAAGATTTTCAGGAGTTTGGAAAATTCTACTCATGCCAACTGCTCAGCAGATGGAGAAGATTACAGCGCAGGGTCAGCAGAGCAATCTCCAAATCCTATAGTTCCATGTATATCACTATCTCCATCACCATTGCCATCTGCTCATCCACCTATGGGAGTAAGTGCTTATGGTCCTAGCAGCACACACAACCCAAACATTCCTAATTACAGCACATTGCTTACTCATGCTCCATCCTACAGTTTGTTGGTTGTTCTCTTTTTCTTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

399

Amino Acids

42.49

Weight (kDa)

5.72

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 771
AccBSI CCGCTC 1 cut(s) 450
AccII CGCG 1 cut(s) 625
AciI CCGC 6 cut(s) 181, 450, 623, 625, 726, 925
AclWI GGATC 3 cut(s) 320, 369, 626
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 5 cut(s) 161, 255, 282, 572, 949
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 4 cut(s) 69, 481, 521, 692
AfiI CCNNNNNNNGG 4 cut(s) 245, 420, 504, 1079
AflIII ACRYGT 2 cut(s) 522, 899
AgsI TTSAA 1 cut(s) 723
AhlI ACTAGT 1 cut(s) 70
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 5 cut(s) 19, 350, 357, 552, 702
AluI AGCT 5 cut(s) 19, 350, 357, 552, 702
Alw26I GTCTC 2 cut(s) 633, 779
AlwI GGATC 3 cut(s) 320, 369, 626
AoxI GGCC 4 cut(s) 610, 808, 913, 922
ApeKI GCWGC 4 cut(s) 212, 347, 558, 1104
ApoI RAATTY 5 cut(s) 161, 255, 282, 572, 949
AspLEI GCGC 2 cut(s) 581, 995
AspS9I GGNCC 4 cut(s) 411, 428, 809, 1097
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 3 cut(s) 234, 610, 1044
AvaII GGWCC 3 cut(s) 411, 428, 1097
BbvI GCAGC 4 cut(s) 199, 359, 570, 1116
BccI CCATC 8 cut(s) 247, 302, 583, 802, 971, 1057, 1069, 1165
BceAI ACGGC 1 cut(s) 625
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 633, 779
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 3 cut(s) 65, 71, 1101
BfmI CTRYAG 5 cut(s) 260, 760, 824, 1023, 1162
BglI GCCNNNNNGGC 1 cut(s) 921
BisI GCNGC 5 cut(s) 213, 348, 559, 925, 1105
BlpI GCTNAGC 1 cut(s) 970
BlsI GCNGC 5 cut(s) 214, 349, 560, 926, 1106
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 246, 636
Bme18I GGWCC 3 cut(s) 411, 428, 1097
BmgT120I GGNCC 4 cut(s) 411, 428, 809, 1097
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 246, 636
BmsI GCATC 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 970
BpuEI CTTGAG 3 cut(s) 41, 574, 761
BpuMI CCSGG 1 cut(s) 636
BsaAI YACGTR 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 149, 623
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 420, 504, 1079
Bse1I ACTGG 2 cut(s) 573, 692
Bse3DI GCAATG 2 cut(s) 1055, 1139
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 149, 623
BseGI GGATG 4 cut(s) 313, 794, 1069, 1157
BseLI CCNNNNNNNGG 4 cut(s) 245, 420, 504, 1079
BseMI GCAATG 2 cut(s) 1055, 1139
BseMII CTCAG 2 cut(s) 159, 984
BseNI ACTGG 2 cut(s) 573, 692
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 4 cut(s) 199, 359, 570, 1116
BsgI GTGCAG 3 cut(s) 106, 417, 557
Bsh1236I CGCG 1 cut(s) 625
BshFI GGCC 4 cut(s) 612, 810, 915, 924
BsiSI CCGG 2 cut(s) 636, 798
BslFI GGGAC 3 cut(s) 131, 167, 414
BslI CCNNNNNNNGG 4 cut(s) 245, 420, 504, 1079
BsmAI GTCTC 2 cut(s) 633, 779
BsmFI GGGAC 3 cut(s) 131, 167, 414
BsnI GGCC 4 cut(s) 612, 810, 915, 924
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 6 cut(s) 8, 312, 361, 616, 631, 841
Bsp1720I GCTNAGC 1 cut(s) 970
BspACI CCGC 6 cut(s) 181, 450, 623, 625, 726, 925
BspANI GGCC 4 cut(s) 612, 810, 915, 924
BspCNI CTCAG 2 cut(s) 160, 983
BspFNI CGCG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 3 cut(s) 264, 764, 828
BspPI GGATC 3 cut(s) 320, 369, 626
BsrBI CCGCTC 1 cut(s) 450
BsrDI GCAATG 2 cut(s) 1055, 1139
BsrGI TGTACA 1 cut(s) 519
BsrI ACTGG 2 cut(s) 573, 692
BssECI CCNNGG 2 cut(s) 149, 623
BssMI GATC 6 cut(s) 8, 312, 361, 616, 631, 841
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 4 cut(s) 321, 340, 471, 1166
Bst6I CTCTTC 2 cut(s) 115, 135
BstAPI GCANNNNNTGC 1 cut(s) 753
BstAUI TGTACA 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 4 cut(s) 103, 264, 301, 452
BstDEI CTNAG 2 cut(s) 168, 970
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 4 cut(s) 313, 794, 1069, 1157
BstFNI CGCG 1 cut(s) 625
BstHHI GCGC 2 cut(s) 581, 995
BstKTI GATC 6 cut(s) 11, 315, 364, 619, 634, 844
BstMAI GTCTC 2 cut(s) 633, 779
BstMBI GATC 6 cut(s) 8, 312, 361, 616, 631, 841
BstMWI GCNNNNNNNGC 9 cut(s) 456, 558, 609, 734, 753, 768, 807, 921, 1001
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 5 cut(s) 83, 105, 526, 669, 903
BstSCI CCNGG 2 cut(s) 244, 634
BstSFI CTRYAG 5 cut(s) 260, 760, 824, 1023, 1162
BstUI CGCG 1 cut(s) 625
BstV1I GCAGC 4 cut(s) 199, 359, 570, 1116
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 4 cut(s) 612, 810, 915, 924
BtgI CCRYGG 1 cut(s) 623
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 4 cut(s) 313, 794, 1069, 1157
BtsI GCAGTG 2 cut(s) 59, 833
BtsIMutI CAGTG 3 cut(s) 59, 336, 833
Cac8I GCNNGC 4 cut(s) 103, 264, 301, 452
CfoI GCGC 2 cut(s) 581, 995
Cfr13I GGNCC 4 cut(s) 411, 428, 809, 1097
Cfr42I CCGCGG 1 cut(s) 626
Csp6I GTAC 4 cut(s) 68, 480, 520, 691
CviQI GTAC 4 cut(s) 68, 480, 520, 691
DdeI CTNAG 2 cut(s) 168, 970
DpnI GATC 6 cut(s) 10, 314, 363, 618, 633, 843
DpnII GATC 6 cut(s) 8, 312, 361, 616, 631, 841
DrdI GACNNNNNNGTC 1 cut(s) 771
DseDI GACNNNNNNGTC 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 2 cut(s) 115, 135
EarI CTCTTC 2 cut(s) 115, 135
Eco130I CCWWGG 1 cut(s) 149
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 411, 428, 1097
Eco57I CTGAAG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 149
FaqI GGGAC 3 cut(s) 131, 167, 414
FauI CCCGC 2 cut(s) 443, 618
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 5 cut(s) 213, 348, 559, 925, 1105
FokI GGATG 4 cut(s) 320, 781, 1056, 1144
Fsp4HI GCNGC 5 cut(s) 213, 348, 559, 925, 1105
FspBI CTAG 3 cut(s) 65, 71, 1101
GlaI GCGC 2 cut(s) 580, 994
GluI GCNGC 5 cut(s) 213, 348, 559, 925, 1105
HaeIII GGCC 4 cut(s) 612, 810, 915, 924
HapII CCGG 2 cut(s) 636, 798
HhaI GCGC 2 cut(s) 581, 995
Hin6I GCGC 2 cut(s) 579, 993
HinP1I GCGC 2 cut(s) 579, 993
HinfI GANTC 4 cut(s) 116, 155, 436, 836
HpaII CCGG 2 cut(s) 636, 798
HphI GGTGA 3 cut(s) 234, 610, 1044
Hpy166II GTNNAC 2 cut(s) 90, 520
Hpy188I TCNGA 6 cut(s) 115, 169, 317, 366, 684, 841
Hpy188III TCNNGA 1 cut(s) 937
Hpy8I GTNNAC 2 cut(s) 90, 520
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 4 cut(s) 321, 340, 471, 1166
HpyCH4IV ACGT 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 9 cut(s) 456, 558, 609, 734, 753, 768, 807, 921, 1001
HpyF3I CTNAG 2 cut(s) 168, 970
HpySE526I ACGT 1 cut(s) 482
HspAI GCGC 2 cut(s) 579, 993
KspI CCGCGG 1 cut(s) 626
Kzo9I GATC 6 cut(s) 8, 312, 361, 616, 631, 841
LmnI GCTCC 2 cut(s) 110, 1159
Lsp1109I GCAGC 4 cut(s) 199, 359, 570, 1116
LweI GCATC 1 cut(s) 612
MaeI CTAG 3 cut(s) 65, 71, 1101
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 73
MalI GATC 6 cut(s) 10, 314, 363, 618, 633, 843
MbiI CCGCTC 1 cut(s) 450
MboI GATC 6 cut(s) 8, 312, 361, 616, 631, 841
MboII GAAGA 5 cut(s) 34, 102, 122, 995, 1180
MflI RGATCY 1 cut(s) 361
MluCI AATT 8 cut(s) 161, 255, 282, 289, 405, 572, 949, 1129
MlyI GAGTC 2 cut(s) 110, 149
MmeI TCCRAC 1 cut(s) 892
MnlI CCTC 5 cut(s) 118, 136, 523, 623, 905
MseI TTAA 4 cut(s) 225, 489, 704, 731
MslI CAYNNNNRTG 1 cut(s) 481
MspA1I CMGCKG 2 cut(s) 350, 625
MspI CCGG 2 cut(s) 636, 798
MspR9I CCNGG 2 cut(s) 246, 636
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 625
MwoI GCNNNNNNNGC 9 cut(s) 456, 558, 609, 734, 753, 768, 807, 921, 1001
NciI CCSGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 529
NdeII GATC 6 cut(s) 8, 312, 361, 616, 631, 841
NlaIV GGNNCC 1 cut(s) 430
NspI RCATGY 5 cut(s) 83, 105, 526, 669, 903
PaeI GCATGC 1 cut(s) 105
PciI ACATGT 2 cut(s) 522, 899
PfeI GAWTC 2 cut(s) 436, 836
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 5 cut(s) 214, 349, 560, 926, 1106
PleI GAGTC 2 cut(s) 110, 149
PpsI GAGTC 2 cut(s) 110, 149
Ppu21I YACGTR 1 cut(s) 483
PscI ACATGT 2 cut(s) 522, 899
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 4 cut(s) 411, 428, 809, 1097
PstI CTGCAG 3 cut(s) 264, 764, 828
PsuI RGATCY 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 4 cut(s) 69, 481, 521, 692
RsaNI GTAC 4 cut(s) 68, 480, 520, 691
RseI CAYNNNNRTG 1 cut(s) 481
SacII CCGCGG 1 cut(s) 626
SaqAI TTAA 4 cut(s) 225, 489, 704, 731
SatI GCNGC 5 cut(s) 213, 348, 559, 925, 1105
Sau3AI GATC 6 cut(s) 8, 312, 361, 616, 631, 841
Sau96I GGNCC 4 cut(s) 411, 428, 809, 1097
ScaI AGTACT 1 cut(s) 69
SchI GAGTC 2 cut(s) 110, 149
ScrFI CCNGG 2 cut(s) 246, 636
SetI ASST 8 cut(s) 21, 128, 352, 359, 485, 554, 704, 1078
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 5 cut(s) 260, 760, 824, 1023, 1162
SfiI GGCCNNNNNGGCC 1 cut(s) 921
Sfr303I CCGCGG 1 cut(s) 626
SgrBI CCGCGG 1 cut(s) 626
SinI GGWCC 3 cut(s) 411, 428, 1097
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 3 cut(s) 20, 553, 776
SmoI CTYRAG 3 cut(s) 20, 553, 776
SpeI ACTAGT 1 cut(s) 70
SphI GCATGC 1 cut(s) 105
Sse9I AATT 8 cut(s) 161, 255, 282, 289, 405, 572, 949, 1129
SsiI CCGC 6 cut(s) 181, 450, 623, 625, 726, 925
SspMI CTAG 3 cut(s) 65, 71, 1101
StyD4I CCNGG 2 cut(s) 244, 634
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 4 cut(s) 321, 340, 471, 1166
TaiI ACGT 1 cut(s) 485
TaqI TCGA 3 cut(s) 615, 630, 910
TasI AATT 8 cut(s) 161, 255, 282, 289, 405, 572, 949, 1129
TatI WGTACW 2 cut(s) 67, 519
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 2 cut(s) 436, 836
Tru1I TTAA 4 cut(s) 225, 489, 704, 731
Tru9I TTAA 4 cut(s) 225, 489, 704, 731
TscAI CASTG 3 cut(s) 66, 343, 833
TseI GCWGC 4 cut(s) 212, 347, 558, 1104
TspDTI ATGAA 5 cut(s) 28, 34, 431, 660, 838
TspRI CASTG 3 cut(s) 66, 343, 833
VpaK11BI GGWCC 3 cut(s) 411, 428, 1097
XapI RAATTY 5 cut(s) 161, 255, 282, 572, 949
XceI RCATGY 5 cut(s) 83, 105, 526, 669, 903
XspI CTAG 3 cut(s) 65, 71, 1101
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.