Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459667.1

Orthogroup ID

OG0010568

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1809

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

atgggctgggcgctacacggcagaaactcagggtttcaaggcgatgctggcttgtggttgagcttgacgacgcggctcggggcgaggctagccgtggcgtggctggttcaggacgggtctcgagggcagtgctgcacagccttctgcaggcgtggaggaaggatgctctccgagatcgcttaccgcttccaggtaaacgtttttgatataatggcagccaactccatcaacatcacaacatcatcagtggggaaccaaattttcggtgcaaggtctcaacttaaagtgcccatttcgtgtccatgtgtggatggtatcaggagggttttgttatcctacatggttcgagcagctgatagcttggatctgatatcagaaggttatggcaggcttgtgagtggtgaacaacttaggactctgaatgggattagtcccaagaatccattgacgagcggtcaaagcattttggtgcagttgccatgtacttgctttaacaatagtaacaatggggttacttcagtgtttatgtcatatgtggtgcagagtggggagagcttgagcaacattggagtggagtttgggacaacagtgatggagttggtcaacgttaatgggcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

206

Amino Acids

22.14

Weight (kDa)

8.79

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12220 FvH4_5g12220 FvH4_5g12220 FvH4_5g12220
malus_domestica	MD06G1215700.v1.1
prunus_persica	Prupe.5G220900_v2.0.a1 Prupe.5G220900_v2.0.a1
pyrus_communis	pycom06g19240
rosa_chinensis	RchiOBHm_Chr7g0185361
rosa_laevigata	RLG00000004919
rosa_multiflora	Rmu_co8459667.1_g000001 Rmu_sc0008496.1_g000002
rosa_roxburghii	Rroxscaffold_3G00269020
rosa_rugosa	Rorug06G0468300 Rorug06G0468300 Rorug06G0468400
rosa_samantha	Rh7AG074400 Rh7BG072900 Rh7CG073800 Rh7DG073400
rosa_wichuraiana	Rw7G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	73, 184, 453
AclI	AACGTT	2 cut(s)	198, 606
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	3 cut(s)	99, 147, 190
AgsI	TTSAA	1 cut(s)	38
AhdI	GACNNNNNGTC	1 cut(s)	453
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	63, 353, 360, 555
AluI	AGCT	4 cut(s)	63, 353, 360, 555
Alw26I	GTCTC	2 cut(s)	123, 279
AlwI	GGATC	1 cut(s)	372
Ama87I	CYCGRG	2 cut(s)	77, 120
ApeKI	GCWGC	3 cut(s)	132, 215, 350
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	88
AvaI	CYCGRG	2 cut(s)	77, 120
BaeGI	GKGCMC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	119, 227, 362
BccI	CCATC	3 cut(s)	233, 305, 586
BceAI	ACGGC	2 cut(s)	34, 77
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	123, 279
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	4 cut(s)	74, 133, 216, 351
BlsI	GCNGC	4 cut(s)	75, 134, 217, 352
Bme1390I	CCNGG	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmeT110I	CYCGRG	2 cut(s)	77, 120
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	34, 153
BmtI	GCTAGC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	577
BsaI	GGTCTC	2 cut(s)	123, 279
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 147, 190
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	168, 316
BseLI	CCNNNNNNNGG	3 cut(s)	99, 147, 190
BseMII	CTCAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	119, 227, 362
BseYI	CCCAGC	1 cut(s)	6
BsgI	GTGCAG	3 cut(s)	118, 491, 560
Bsh1236I	CGCG	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	77, 120
BslFI	GGGAC	2 cut(s)	417, 595
BslI	CCNNNNNNNGG	3 cut(s)	99, 147, 190
BsmAI	GTCTC	2 cut(s)	123, 279
BsmFI	GGGAC	2 cut(s)	417, 595
Bso31I	GGTCTC	2 cut(s)	123, 279
BsoBI	CYCGRG	2 cut(s)	77, 120
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	174, 364
BspACI	CCGC	3 cut(s)	73, 184, 453
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	254
BspMAI	CTGCAG	1 cut(s)	149
BspOI	GCTAGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	372
BspTNI	GGTCTC	2 cut(s)	123, 279
BsrBI	CCGCTC	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	174, 364
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	589
BstC8I	GCNNGC	4 cut(s)	49, 90, 149, 389
BstDEI	CTNAG	2 cut(s)	28, 410
BstDSI	CCRYGG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	168, 316
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	177, 367
BstMAI	GTCTC	2 cut(s)	123, 279
BstMBI	GATC	2 cut(s)	174, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 89, 459
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	3 cut(s)	119, 227, 362
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	168, 316
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	4 cut(s)	134, 252, 525, 594
Cac8I	GCNNGC	4 cut(s)	49, 90, 149, 389
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	3 cut(s)	303, 340, 480
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	28, 410
DpnI	GATC	2 cut(s)	176, 366
DpnII	GATC	2 cut(s)	174, 364
DriI	GACNNNNNGTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	453
Eco31I	GGTCTC	2 cut(s)	123, 279
Eco32I	GATATC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	77, 120
EcoNI	CCTNNNNNAGG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	372
FaeI	CATG	3 cut(s)	306, 343, 483
FaiI	YATR	8 cut(s)	209, 304, 341, 384, 481, 527, 532, 534
FaqI	GGGAC	2 cut(s)	417, 595
FatI	CATG	3 cut(s)	302, 339, 479
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	4 cut(s)	74, 133, 216, 351
FokI	GGATG	2 cut(s)	175, 323
Fsp4HI	GCNGC	4 cut(s)	74, 133, 216, 351
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	74, 133, 216, 351
GsaI	CCCAGC	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	14
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	306, 343, 483
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	415, 439
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	3 cut(s)	196, 404, 604
Hpy188I	TCNGA	4 cut(s)	172, 369, 376, 420
Hpy188III	TCNNGA	3 cut(s)	110, 120, 319
Hpy8I	GTNNAC	3 cut(s)	196, 404, 604
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	151, 153, 371
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	2 cut(s)	198, 606
HpyCH4V	TGCA	5 cut(s)	135, 147, 269, 472, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 89, 459
HpyF3I	CTNAG	2 cut(s)	28, 410
HpySE526I	ACGT	2 cut(s)	198, 606
Hsp92II	CATG	3 cut(s)	306, 343, 483
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	174, 364
LpnPI	CCDG	9 cut(s)	15, 33, 89, 95, 133, 176, 203, 304, 373
Lsp1109I	GCAGC	3 cut(s)	119, 227, 362
LweI	GCATC	2 cut(s)	34, 153
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	198, 606
MaeIII	GTNAC	2 cut(s)	500, 511
MalI	GATC	2 cut(s)	176, 366
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	2 cut(s)	174, 364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	78, 116, 149, 315
MseI	TTAA	3 cut(s)	282, 492, 609
MslI	CAYNNNNRTG	2 cut(s)	467, 569
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	48, 89, 459
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	174, 364
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	306, 343, 483
NlaIV	GGNNCC	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	75, 134, 217, 352
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp1406I	AACGTT	2 cut(s)	198, 606
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	2 cut(s)	467, 569
SaqAI	TTAA	3 cut(s)	282, 492, 609
SatI	GCNGC	4 cut(s)	74, 133, 216, 351
Sau3AI	GATC	2 cut(s)	174, 364
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	9 cut(s)	65, 195, 201, 275, 355, 362, 382, 557, 609
SfaNI	GCATC	2 cut(s)	34, 153
SfcI	CTRYAG	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	467, 569
SmlI	CTYRAG	2 cut(s)	120, 556
SmoI	CTYRAG	2 cut(s)	120, 556
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	3 cut(s)	73, 184, 453
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	2 cut(s)	201, 609
TaqI	TCGA	2 cut(s)	121, 346
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	282, 492, 609
Tru9I	TTAA	3 cut(s)	282, 492, 609
TscAI	CASTG	4 cut(s)	134, 252, 525, 594
TseI	GCWGC	3 cut(s)	132, 215, 350
TspRI	CASTG	4 cut(s)	134, 252, 525, 594
XagI	CCTNNNNNAGG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.