MD06G1215700.v1.1

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010568
Physical Location & Seq
Forward (+)
34801598 .. 34804224
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1215700.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGAGATCAAATCACCTAGTACTAGTACTTCTGCAACTTTTATTCATCTTCTCCATTAGTCTAGCAAATGCCAAGTCCACCATAGAACCATGTTCCTCCGCAGACTCCTGCTCCTCCCTCCTCTCCTACATCCTCCCATGGGACTCGAAACTCTCCGAAATCGCCTTCCGCTTCCAACTAAACGTCTTCGACGTCCTGGCCGCCAACTCCATCAACTTAACCATTCCGTTCCTTGGAAACCAAATTATGAAAGCGAAAACCCTACTAAAGATTCCCATTTCGTGTCCATGCGTGGACGGCATCAGGAAGTCCGTTTTAACCTATACCGTCCACGCGGTGGACACGTTGGATCTGATAGCGGAAGGGTACAGCGGGCTCGTGAGCGCCGAGCAGATTAGGACTGTGAACGGGATAGGCGCCAAGAATCCGTTGACGGGCGGGCAGAGCGTTTTGGTGCAGTTGCCATGCACGTGCTTTAATAATAGTAACAACGGGGTTGCTTCTGTGTACATGTCGTATGTGGTGCAGAGTGGGGAGAGCTTGAGCGGCATTGGCGGAGAGTTTGGAGCGACTGTGATGGAGTTGGTGAGCATCAATGGGCTCGATCAACCGTTGGTTGATCCTGGTGACATATTGGCTATTCCAATTTCAGCATGTTCATCAGCAAATTTGAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCATACGCCTTAACTGCCAACAACTGCATAAAGTGCTTTTGCAGATCAACCACTCTCAACTTGCAGTGTTCCCCATCTGGCATTGTCCCCTCATGCTCTCACCTGCAATGCAAAGACTCCGATGTCTTCATCGGCGATGTGATAACCAAACCAACAGCATTAGGTTGTAATGTCAGCACATGTGTGTACCGAGGCCACAATGGCCGCAAGATTTTCAGGAGTTTGGAAAATTCTTCTCATGCCAATTGCTCAGATGTACAAGATTACAGCGCAGTGTCACCAGAGCAATCTTCTAATCCTGTAATCCCATATATATCTTTACCTCCATCAGCATCACCATCTTCTTATCCACCCATGGGAATTGGTGCTTATGGACCTACGAGTACACACAACCCCAATATCTCTAATCACAGCAGATTGCTTACTCAATCTTCATACTACATTTTGTTGGTTGTCCTTGCCCTCTACTTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

396

Amino Acids

42.23

Weight (kDa)

5.95

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 173 - 215 7.5e-08 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 819
AasI GACNNNNNNGTC 1 cut(s) 830
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 546
AccII CGCG 1 cut(s) 335
AclWI GGATC 2 cut(s) 357, 614
AcoI YGGCCR 2 cut(s) 198, 910
AcsI RAATTY 2 cut(s) 667, 937
AcvI CACGTG 1 cut(s) 471
AcyI GRCGYC 2 cut(s) 192, 417
AdeI CACNNNGTG 1 cut(s) 337
AfaI GTAC 8 cut(s) 21, 27, 368, 509, 680, 896, 966, 1093
AfiI CCNNNNNNNGG 5 cut(s) 139, 233, 337, 434, 1064
AflIII ACRYGT 3 cut(s) 342, 510, 887
AgsI TTSAA 1 cut(s) 673
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 2 cut(s) 195, 622
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 2 cut(s) 540, 690
AluI AGCT 2 cut(s) 540, 690
AlwI GGATC 2 cut(s) 357, 614
AoxI GGCC 3 cut(s) 198, 901, 910
ApoI RAATTY 2 cut(s) 667, 937
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 3 cut(s) 386, 419, 980
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 6 cut(s) 5, 598, 638, 800, 978, 1035
AvaII GGWCC 1 cut(s) 1082
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 378, 603
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BauI CACGAG 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 471
BbsI GAAGAC 2 cut(s) 178, 826
BccI CCATC 5 cut(s) 218, 571, 790, 1042, 1054
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 197, 624
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 17, 23, 62
BfoI RGCGCY 2 cut(s) 387, 420
BfuAI ACCTGC 1 cut(s) 819
BglI GCCNNNNNGGC 1 cut(s) 909
BisI GCNGC 3 cut(s) 201, 547, 913
BlsI GCNGC 3 cut(s) 202, 548, 914
BmcAI AGTACT 2 cut(s) 21, 27
Bme1390I CCNGG 2 cut(s) 197, 624
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 197, 624
BmsI GCATC 3 cut(s) 309, 600, 1049
BpiI GAAGAC 2 cut(s) 178, 826
BpuEI CTTGAG 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 471
BsaHI GRCGYC 2 cut(s) 192, 417
BsaJI CCNNGG 4 cut(s) 137, 232, 898, 1062
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 558, 588
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 233, 337, 434, 1064
Bse1I ACTGG 1 cut(s) 680
Bse3DI GCAATG 1 cut(s) 821
BseBI CCWGG 2 cut(s) 197, 624
BseDI CCNNGG 4 cut(s) 137, 232, 898, 1062
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 5 cut(s) 139, 233, 337, 434, 1064
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 2 cut(s) 103, 110
BsgI GTGCAG 2 cut(s) 476, 545
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 200, 903, 912
BshNI GGYRCC 1 cut(s) 416
BslFI GGGAC 2 cut(s) 155, 779
BslI CCNNNNNNNGG 5 cut(s) 139, 233, 337, 434, 1064
BsmFI GGGAC 2 cut(s) 155, 779
BsnI GGCC 3 cut(s) 200, 903, 912
Bsp1286I GDGCHC 2 cut(s) 378, 603
Bsp1407I TGTACA 2 cut(s) 507, 964
Bsp143I GATC 5 cut(s) 5, 349, 604, 619, 752
Bsp19I CCATGG 2 cut(s) 137, 1062
BspANI GGCC 3 cut(s) 200, 903, 912
BspCNI CTCAG 1 cut(s) 971
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 819
BspPI GGATC 2 cut(s) 357, 614
BspT107I GGYRCC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 821
BsrGI TGTACA 2 cut(s) 507, 964
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 4 cut(s) 137, 232, 898, 1062
BssMI GATC 5 cut(s) 5, 349, 604, 619, 752
BssNI GRCGYC 2 cut(s) 192, 417
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 3 cut(s) 137, 232, 1062
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 197, 624
Bst4CI ACNGT 4 cut(s) 328, 403, 574, 612
BstACI GRCGYC 2 cut(s) 192, 417
BstAPI GCANNNNNTGC 1 cut(s) 741
BstAUI TGTACA 2 cut(s) 507, 964
BstBAI YACGTR 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 374, 440
BstDEI CTNAG 1 cut(s) 958
BstDSI CCRYGG 2 cut(s) 137, 1062
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 2 cut(s) 387, 420
BstHHI GCGC 3 cut(s) 386, 419, 980
BstKTI GATC 5 cut(s) 8, 352, 607, 622, 755
BstMBI GATC 5 cut(s) 5, 349, 604, 619, 752
BstMWI GCNNNNNNNGC 7 cut(s) 297, 444, 546, 552, 722, 741, 909
BstNI CCWGG 2 cut(s) 197, 624
BstNSI RCATGY 3 cut(s) 514, 657, 891
BstSCI CCNGG 2 cut(s) 195, 622
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 2 cut(s) 178, 826
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 3 cut(s) 200, 903, 912
BtgI CCRYGG 2 cut(s) 137, 1062
BtgZI GCGATG 1 cut(s) 858
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 2 cut(s) 779, 987
BtsIMutI CAGTG 2 cut(s) 779, 987
BveI ACCTGC 1 cut(s) 819
Cac8I GCNNGC 2 cut(s) 374, 440
CfoI GCGC 3 cut(s) 386, 419, 980
Cfr13I GGNCC 1 cut(s) 1082
Csp6I GTAC 8 cut(s) 20, 26, 367, 508, 679, 895, 965, 1092
CviJI RGCY 8 cut(s) 200, 376, 540, 601, 638, 690, 903, 912
CviKI_1 RGCY 8 cut(s) 200, 376, 540, 601, 638, 690, 903, 912
CviQI GTAC 8 cut(s) 20, 26, 367, 508, 679, 895, 965, 1092
DdeI CTNAG 1 cut(s) 958
DinI GGCGCC 1 cut(s) 418
DpnI GATC 5 cut(s) 7, 351, 606, 621, 754
DpnII GATC 5 cut(s) 5, 349, 604, 619, 752
DraIII CACNNNGTG 1 cut(s) 337
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 2 cut(s) 198, 910
EciI GGCGGA 1 cut(s) 570
Eco130I CCWWGG 3 cut(s) 137, 232, 1062
Eco24I GRGCYC 2 cut(s) 378, 603
Eco47I GGWCC 1 cut(s) 1082
Eco72I CACGTG 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 195, 622
EcoT14I CCWWGG 3 cut(s) 137, 232, 1062
EcoT38I GRGCYC 2 cut(s) 378, 603
EgeI GGCGCC 1 cut(s) 418
EheI GGCGCC 1 cut(s) 418
ErhI CCWWGG 3 cut(s) 137, 232, 1062
FaqI GGGAC 2 cut(s) 155, 779
FauI CCCGC 2 cut(s) 365, 431
Fnu4HI GCNGC 3 cut(s) 201, 547, 913
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 378, 603
Fsp4HI GCNGC 3 cut(s) 201, 547, 913
FspBI CTAG 3 cut(s) 17, 23, 62
GlaI GCGC 3 cut(s) 385, 418, 979
GluI GCNGC 3 cut(s) 201, 547, 913
HaeII RGCGCY 2 cut(s) 387, 420
HaeIII GGCC 3 cut(s) 200, 903, 912
HhaI GCGC 3 cut(s) 386, 419, 980
Hin1I GRCGYC 2 cut(s) 192, 417
Hin6I GCGC 3 cut(s) 384, 417, 978
HinP1I GCGC 3 cut(s) 384, 417, 978
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 5 cut(s) 104, 143, 271, 424, 824
HphI GGTGA 6 cut(s) 5, 598, 638, 800, 978, 1035
Hpy166II GTNNAC 9 cut(s) 78, 295, 331, 340, 406, 432, 508, 895, 1094
Hpy188I TCNGA 4 cut(s) 157, 354, 829, 961
Hpy188III TCNNGA 3 cut(s) 304, 379, 925
Hpy8I GTNNAC 9 cut(s) 78, 295, 331, 340, 406, 432, 508, 895, 1094
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 175, 356
HpyCH4III ACNGT 4 cut(s) 328, 403, 574, 612
HpyCH4IV ACGT 4 cut(s) 183, 192, 344, 470
HpyCH4V TGCA 9 cut(s) 34, 457, 468, 526, 735, 750, 772, 814, 819
HpyF10VI GCNNNNNNNGC 7 cut(s) 297, 444, 546, 552, 722, 741, 909
HpyF3I CTNAG 1 cut(s) 958
HpySE526I ACGT 4 cut(s) 183, 192, 344, 470
Hsp92I GRCGYC 2 cut(s) 192, 417
HspAI GCGC 3 cut(s) 384, 417, 978
KasI GGCGCC 1 cut(s) 416
Kzo9I GATC 5 cut(s) 5, 349, 604, 619, 752
LmnI GCTCC 2 cut(s) 116, 566
LweI GCATC 3 cut(s) 309, 600, 1049
MaeI CTAG 3 cut(s) 17, 23, 62
MaeII ACGT 4 cut(s) 183, 192, 344, 470
MaeIII GTNAC 3 cut(s) 485, 626, 984
MalI GATC 5 cut(s) 7, 351, 606, 621, 754
MbiI CCGCTC 1 cut(s) 546
MboI GATC 5 cut(s) 5, 349, 604, 619, 752
MboII GAAGA 7 cut(s) 40, 178, 826, 933, 990, 1041, 1131
MfeI CAATTG 1 cut(s) 952
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 378, 603
MluCI AATT 6 cut(s) 243, 645, 667, 937, 952, 1068
Mly113I GGCGCC 1 cut(s) 417
MlyI GAGTC 3 cut(s) 98, 137, 818
MmeI TCCRAC 2 cut(s) 199, 327
MnlI CCTC 9 cut(s) 106, 124, 128, 131, 143, 808, 893, 1041, 1181
MseI TTAA 5 cut(s) 218, 317, 477, 692, 719
MslI CAYNNNNRTG 2 cut(s) 469, 890
MspA1I CMGCKG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 197, 624
MunI CAATTG 1 cut(s) 952
MvaI CCWGG 2 cut(s) 197, 624
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 7 cut(s) 297, 444, 546, 552, 722, 741, 909
NarI GGCGCC 1 cut(s) 417
NcoI CCATGG 2 cut(s) 137, 1062
NdeII GATC 5 cut(s) 5, 349, 604, 619, 752
NlaIV GGNNCC 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 626, 984
NspI RCATGY 3 cut(s) 514, 657, 891
OliI CACNNNNGTG 1 cut(s) 890
PaqCI CACCTGC 1 cut(s) 819
PciI ACATGT 2 cut(s) 510, 887
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 384
PfeI GAWTC 2 cut(s) 271, 424
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 3 cut(s) 202, 548, 914
PleI GAGTC 3 cut(s) 98, 137, 818
PluTI GGCGCC 1 cut(s) 420
PmaCI CACGTG 1 cut(s) 471
PmlI CACGTG 1 cut(s) 471
PpsI GAGTC 3 cut(s) 98, 137, 818
Ppu21I YACGTR 1 cut(s) 471
PscI ACATGT 2 cut(s) 510, 887
Psp6I CCWGG 2 cut(s) 195, 622
PspCI CACGTG 1 cut(s) 471
PspGI CCWGG 2 cut(s) 195, 622
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 8 cut(s) 21, 27, 368, 509, 680, 896, 966, 1093
RsaNI GTAC 8 cut(s) 20, 26, 367, 508, 679, 895, 965, 1092
RseI CAYNNNNRTG 2 cut(s) 469, 890
SaqAI TTAA 5 cut(s) 218, 317, 477, 692, 719
SatI GCNGC 3 cut(s) 201, 547, 913
Sau3AI GATC 5 cut(s) 5, 349, 604, 619, 752
Sau96I GGNCC 1 cut(s) 1082
ScaI AGTACT 2 cut(s) 21, 27
SchI GAGTC 3 cut(s) 98, 137, 818
ScrFI CCNGG 2 cut(s) 197, 624
SduI GDGCHC 2 cut(s) 378, 603
SfaNI GCATC 3 cut(s) 309, 600, 1049
SfiI GGCCNNNNNGGCC 1 cut(s) 909
SfoI GGCGCC 1 cut(s) 418
SinI GGWCC 1 cut(s) 1082
SmiMI CAYNNNNRTG 2 cut(s) 469, 890
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 6 cut(s) 243, 645, 667, 937, 952, 1068
SspDI GGCGCC 1 cut(s) 416
SspMI CTAG 3 cut(s) 17, 23, 62
StyD4I CCNGG 2 cut(s) 195, 622
StyI CCWWGG 3 cut(s) 137, 232, 1062
TaaI ACNGT 4 cut(s) 328, 403, 574, 612
TaiI ACGT 4 cut(s) 186, 195, 347, 473
TaqI TCGA 3 cut(s) 146, 189, 603
TasI AATT 6 cut(s) 243, 645, 667, 937, 952, 1068
TatI WGTACW 5 cut(s) 19, 25, 507, 964, 1091
TauI GCSGC 3 cut(s) 203, 549, 915
TfiI GAWTC 2 cut(s) 271, 424
Tru1I TTAA 5 cut(s) 218, 317, 477, 692, 719
Tru9I TTAA 5 cut(s) 218, 317, 477, 692, 719
TscAI CASTG 2 cut(s) 779, 987
TseFI GTSAC 2 cut(s) 626, 984
Tsp45I GTSAC 2 cut(s) 626, 984
TspDTI ATGAA 6 cut(s) 34, 263, 648, 699, 826, 1131
TspGWI ACGGA 3 cut(s) 216, 301, 417
TspRI CASTG 2 cut(s) 779, 987
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 1082
XapI RAATTY 2 cut(s) 667, 937
XceI RCATGY 3 cut(s) 514, 657, 891
XspI CTAG 3 cut(s) 17, 23, 62
ZraI GACGTC 1 cut(s) 193
ZrmI AGTACT 2 cut(s) 21, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.