Rroxscaffold_3G00269020

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010568
Physical Location & Seq
Reverse (-)
61984243 .. 61986378
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269020.1

Sequence Viewer

Length: 1089 bp
ATGAGAAACCAACTTCTTCTGCAACTTCCTTTTGTACTGATATTGATCTTCATTGTCTCCTTCAAACTAACACATGCCAAGTCCACAATAGAACCATGCACCTCTTCAGACTCCTGCCCTTCTCTCCTCTCCTATGTTCTCCCTTGGGACTCAAAGCTCTCCGAGATCGCTTACCGCTTCCAGGTAAACGTTTTTGATATAATGGCGGCCAACTCCATCAACGTCACAACATCATCAGTGGGGAACCAAATTTTCGGTGCAAGGTCTCAACTTAAAGTGCCCATTTCGTGTCCATGTGTGGATGGTATCAGGAGGGTTTTGTTATCCTACATGGTTCGAGCAGCTGATAGCTTGGATCTGATATCAGAAGGTTATGGCAGGCTTGTGAGTGGTGAACAACTTAGGACTCTGAATGGGATTAGTCCCAAGAATCCATTGACGAGCGGTCAAAGCATTTTGGTGCAGTTGCCATGTACCTGCTTTAACAATAGTAACAATGGGGTTACTTCAGTGTTTATGTCATATGTGGTGCAGAGTGGGGAGAGCTTGAGCAACATTGGAGTGGAGTTTGGGACAACAGTGATGGAGTTGGTCAACGTTAATGGGCTTGACCAACCGAGGGTTGACGCTGGAGACATATTGGCTATTCCAATTTCAGCATGTTCATCAGCAAATCTTAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCATATGCCTTAACTGCTAGCAATTGCATTAATGCAAAGGATCCATTCTTTTCATTGGAGACGTTTCCATCAACCGAACAGCTAGTGGTTGTAATATCAGCACCTGTGTATATCGAGGCCACAATGGTAGCAAAATTTTCAGGGGATGACGACTATTACAGCACAGTTTCACCGGTGGCATCTCCTAATAATCCTACAGTCCCATACATATCATTACCTCCTTCACAATCACCATTTCCTAATCCAACAATTGGAACAGGTGCCAACGGTCCTTCCAGTATACAAAATCCTAATAGTGCACCGAATAAGTATGGCAGATGGCTTACTCAAGCTCCATATTACAGTTTGTGGGTTGTCCTCTGCTTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

362

Amino Acids

39.16

Weight (kDa)

4.84

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 175 - 217 1.3e-09 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AccB1I GGYRCC 1 cut(s) 974
AccB7I CCANNNNNTGG 1 cut(s) 965
AccBSI CCGCTC 1 cut(s) 444
AccI GTMKAC 1 cut(s) 994
AciI CCGC 3 cut(s) 175, 206, 444
AclI AACGTT 2 cut(s) 189, 597
AclWI GGATC 3 cut(s) 363, 749, 762
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 249, 848
AcuI CTGAAG 2 cut(s) 90, 492
AfaI GTAC 3 cut(s) 36, 475, 686
AfiI CCNNNNNNNGG 3 cut(s) 181, 619, 965
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 7 cut(s) 157, 344, 351, 546, 696, 796, 1046
AluI AGCT 7 cut(s) 157, 344, 351, 546, 696, 796, 1046
Alw21I GWGCWC 1 cut(s) 1015
Alw26I GTCTC 4 cut(s) 61, 270, 627, 767
Alw44I GTGCAC 1 cut(s) 1011
AlwI GGATC 3 cut(s) 363, 749, 762
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 2 cut(s) 207, 831
ApaLI GTGCAC 1 cut(s) 1011
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 2 cut(s) 249, 848
AseI ATTAAT 1 cut(s) 744
AsiGI ACCGGT 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 983
AsuHPI GGTGA 3 cut(s) 404, 876, 936
AsuNHI GCTAGC 1 cut(s) 731
AvaII GGWCC 1 cut(s) 983
BaeGI GKGCMC 2 cut(s) 282, 1015
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 974
Bbv12I GWGCWC 1 cut(s) 1015
BbvI GCAGC 1 cut(s) 353
BccI CCATC 5 cut(s) 224, 296, 577, 790, 1026
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 4 cut(s) 61, 270, 627, 767
BfaI CTAG 2 cut(s) 732, 797
BfmI CTRYAG 1 cut(s) 909
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 207, 342
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 983
BmeRI GACNNNNNGTC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 3 cut(s) 245, 756, 976
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 902
BmtI GCTAGC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 568, 1026
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 143, 617
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 619, 965
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 2 cut(s) 686, 990
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 143, 617
BseGI GGATG 2 cut(s) 307, 865
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 181, 619, 965
BseNI ACTGG 2 cut(s) 686, 990
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 2 cut(s) 282, 1015
BseXI GCAGC 1 cut(s) 353
BsgI GTGCAG 2 cut(s) 482, 551
BshFI GGCC 2 cut(s) 209, 833
BshNI GGYRCC 1 cut(s) 974
BshTI ACCGGT 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 1015
BsiSI CCGG 1 cut(s) 887
BslFI GGGAC 4 cut(s) 161, 408, 586, 899
BslI CCNNNNNNNGG 3 cut(s) 181, 619, 965
BsmAI GTCTC 4 cut(s) 61, 270, 627, 767
BsmBI CGTCTC 1 cut(s) 767
BsmFI GGGAC 4 cut(s) 161, 408, 586, 899
BsnI GGCC 2 cut(s) 209, 833
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 282, 1015
Bsp143I GATC 4 cut(s) 45, 165, 355, 754
BspACI CCGC 3 cut(s) 175, 206, 444
BspANI GGCC 2 cut(s) 209, 833
BspLI GGNNCC 3 cut(s) 245, 756, 976
BspMI ACCTGC 1 cut(s) 485
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 3 cut(s) 363, 749, 762
BspT107I GGYRCC 1 cut(s) 974
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 2 cut(s) 686, 990
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 2 cut(s) 143, 617
BssMI GATC 4 cut(s) 45, 165, 355, 754
BssNAI GTATAC 1 cut(s) 995
BssT1I CCWWGG 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 995
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 5 cut(s) 580, 880, 913, 983, 1058
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 380, 733
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 307, 865
BstKTI GATC 4 cut(s) 48, 168, 358, 757
BstMAI GTCTC 4 cut(s) 61, 270, 627, 767
BstMBI GATC 4 cut(s) 45, 165, 355, 754
BstMWI GCNNNNNNNGC 2 cut(s) 450, 728
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 2 cut(s) 77, 663
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 2 cut(s) 282, 1015
BstV1I GCAGC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 355, 754
BstYI RGATCY 2 cut(s) 355, 754
BstZ17I GTATAC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 209, 833
BtsCI GGATG 2 cut(s) 307, 865
BtsIMutI CAGTG 3 cut(s) 243, 516, 585
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 380, 733
CaiI CAGNNNCTG 1 cut(s) 818
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 983
CseI GACGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 35, 474, 685
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 6 cut(s) 74, 96, 294, 331, 471, 660
CviQI GTAC 3 cut(s) 35, 474, 685
DdeI CTNAG 1 cut(s) 401
DpnI GATC 4 cut(s) 47, 167, 357, 756
DpnII GATC 4 cut(s) 45, 165, 355, 754
DriI GACNNNNNGTC 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 90, 492
EcoRII CCWGG 1 cut(s) 180
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 767
FaeI CATG 6 cut(s) 77, 99, 297, 334, 474, 663
FaqI GGGAC 4 cut(s) 161, 408, 586, 899
FatI CATG 6 cut(s) 73, 95, 293, 330, 470, 659
FauNDI CATATG 2 cut(s) 523, 718
FblI GTMKAC 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 2 cut(s) 314, 872
Fsp4HI GCNGC 2 cut(s) 207, 342
FspBI CTAG 2 cut(s) 732, 797
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 209, 833
HapII CCGG 1 cut(s) 887
HgaI GACGC 1 cut(s) 635
Hin1II CATG 6 cut(s) 77, 99, 297, 334, 474, 663
HincII GTYRAC 2 cut(s) 595, 625
HindII GTYRAC 2 cut(s) 595, 625
HinfI GANTC 4 cut(s) 110, 149, 406, 430
HpaII CCGG 1 cut(s) 887
HphI GGTGA 3 cut(s) 404, 876, 936
Hpy166II GTNNAC 7 cut(s) 84, 187, 395, 595, 625, 995, 1013
Hpy188I TCNGA 5 cut(s) 109, 163, 360, 367, 411
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 7 cut(s) 84, 187, 395, 595, 625, 995, 1013
HpyAV CCTTC 5 cut(s) 70, 129, 362, 945, 996
HpyCH4III ACNGT 5 cut(s) 580, 880, 913, 983, 1058
HpyCH4IV ACGT 4 cut(s) 189, 222, 597, 776
HpyCH4V TGCA 8 cut(s) 22, 99, 260, 463, 532, 741, 749, 1013
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 728
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 4 cut(s) 189, 222, 597, 776
Hsp92II CATG 6 cut(s) 77, 99, 297, 334, 474, 663
Kzo9I GATC 4 cut(s) 45, 165, 355, 754
LmnI GCTCC 1 cut(s) 1051
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 902
MaeI CTAG 2 cut(s) 732, 797
MaeII ACGT 4 cut(s) 189, 222, 597, 776
MaeIII GTNAC 3 cut(s) 223, 491, 502
MalI GATC 4 cut(s) 47, 167, 357, 756
MbiI CCGCTC 1 cut(s) 444
MboI GATC 4 cut(s) 45, 165, 355, 754
MboII GAAGA 3 cut(s) 8, 40, 96
MfeI CAATTG 2 cut(s) 736, 963
MflI RGATCY 2 cut(s) 355, 754
MhlI GDGCHC 2 cut(s) 282, 1015
MluCI AATT 5 cut(s) 249, 651, 736, 848, 963
MlyI GAGTC 3 cut(s) 104, 143, 400
MmeI TCCRAC 1 cut(s) 983
MnlI CCTC 7 cut(s) 112, 137, 306, 612, 823, 942, 1082
MseI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
MslI CAYNNNNRTG 2 cut(s) 458, 560
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 2 cut(s) 736, 963
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 450, 728
NdeI CATATG 2 cut(s) 523, 718
NdeII GATC 4 cut(s) 45, 165, 355, 754
NheI GCTAGC 1 cut(s) 731
NlaIII CATG 6 cut(s) 77, 99, 297, 334, 474, 663
NlaIV GGNNCC 3 cut(s) 245, 756, 976
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 2 cut(s) 77, 663
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 965
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 3 cut(s) 104, 143, 400
PpsI GAGTC 3 cut(s) 104, 143, 400
PshBI ATTAAT 1 cut(s) 744
Psp1406I AACGTT 2 cut(s) 189, 597
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 245, 756, 976
PspPI GGNCC 1 cut(s) 983
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 355, 754
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 3 cut(s) 36, 475, 686
RsaNI GTAC 3 cut(s) 35, 474, 685
RseI CAYNNNNRTG 2 cut(s) 458, 560
SaqAI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 4 cut(s) 45, 165, 355, 754
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 3 cut(s) 104, 143, 400
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 282, 1015
SfaNI GCATC 1 cut(s) 902
SfcI CTRYAG 1 cut(s) 909
SgrAI CRCCGGYG 1 cut(s) 886
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 2 cut(s) 458, 560
SmlI CTYRAG 2 cut(s) 547, 1041
SmoI CTYRAG 2 cut(s) 547, 1041
Sse9I AATT 5 cut(s) 249, 651, 736, 848, 963
SsiI CCGC 3 cut(s) 175, 206, 444
SspMI CTAG 2 cut(s) 732, 797
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 5 cut(s) 580, 880, 913, 983, 1058
TaiI ACGT 4 cut(s) 192, 225, 600, 779
TaqI TCGA 2 cut(s) 337, 828
TasI AATT 5 cut(s) 249, 651, 736, 848, 963
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
Tru9I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
TscAI CASTG 3 cut(s) 243, 516, 585
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 40, 654, 705, 756
TspRI CASTG 3 cut(s) 243, 516, 585
Van91I CCANNNNNTGG 1 cut(s) 965
VneI GTGCAC 1 cut(s) 1011
VpaK11BI GGWCC 1 cut(s) 983
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 2 cut(s) 249, 848
XceI RCATGY 2 cut(s) 77, 663
XmiI GTMKAC 1 cut(s) 994
XspI CTAG 2 cut(s) 732, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.