Rh7AG074400

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010568
Physical Location & Seq
Reverse (-)
5309168 .. 5311175
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG074400.1

Sequence Viewer

Length: 939 bp
ATGAGAAACCAACTTCTTCTGCAACTTCCTTTTGTACTGATATTGATCTTCATTGTCTCCTCCAAACTAACACATGCCAAGTACACAATAGAACCATGCACCTCTTCAGACTCCTGCCCTTCTCTCCTCTCCTATGTTCTCCCTTGGGACTCAAAGCTCTCCGAGATCGCTTACCGCTTCCAGGTAAACGTTTTTGATATAATGGCAGCCAACTCCATCAACATCACAACATCATCAGTGGGGAACCAAATTTTCGGTGCTAGGTCTCAACTTAAAGTGCCCATTTCGTGTCCATGTGTGGATGGTATCAGGAGGGTTTTGTTATCCTACATGGTTCGAGCAGCTGATAGCTTGGATCTGATATCAGAAGGTTATGGCAGGCTTGTGAGTGGTGAACAACTTAGGACTCTGAATGGGATTAGTCCCAAGAATCCATTGACGAGCGGTCAAAGCATTTTGGTGCAGTTGCCATGTACTTGCTTTAACAATAGTAACAATGGGGTTACTTCAGTGTTTATGTCATATGTGGTGCAGAGTGGGGAGAGCTTGAGCAACATTGGAGTGGAGTTTGGGACAACAGTGATGGAGTTGGTCAACGTTAATGGGCTTGACCAACCAAGGGTTGACCCTGGAGACATATTGGCTATTCCAATTTCAGCATGTTCATCAGCAAATCTTAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCATATGCCTTAACTGCTAGCAATTGCATTAAGTGCATTTGTAGGCCAAGCACTCTCAACTTGCAGTGTTTCCCATCTGGGATTGTCAATGCATGCTCACATTTGCAATGCAAAGGATCTAATCTTTTCATTGGAGATGTTTCCATCAACCAAACAGCTACTGGTTGTAATATCAGCACCTGTGTGTATCGAGGCCACAATGGTGGCAAAATTTTCAGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

312

Amino Acids

33.63

Weight (kDa)

7.87

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 175 - 217 4.5e-10 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 444
AciI CCGC 2 cut(s) 175, 444
AclI AACGTT 2 cut(s) 189, 597
AclWI GGATC 2 cut(s) 363, 838
AcsI RAATTY 2 cut(s) 249, 924
AcuI CTGAAG 2 cut(s) 90, 492
AfaI GTAC 4 cut(s) 36, 83, 475, 686
AfiI CCNNNNNNNGG 2 cut(s) 181, 619
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 2 cut(s) 180, 628
AleI CACNNNNGTG 2 cut(s) 896, 915
AluBI AGCT 6 cut(s) 157, 344, 351, 546, 696, 872
AluI AGCT 6 cut(s) 157, 344, 351, 546, 696, 872
Alw26I GTCTC 3 cut(s) 61, 270, 627
AlwI GGATC 2 cut(s) 363, 838
AlwNI CAGNNNCTG 2 cut(s) 875, 894
AoxI GGCC 2 cut(s) 758, 907
ApeKI GCWGC 2 cut(s) 206, 341
ApoI RAATTY 2 cut(s) 249, 924
AsuHPI GGTGA 1 cut(s) 404
AsuNHI GCTAGC 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 218, 353
BccI CCATC 5 cut(s) 224, 296, 577, 796, 866
BciT130I CCWGG 2 cut(s) 182, 630
BcoDI GTCTC 3 cut(s) 61, 270, 627
BfaI CTAG 2 cut(s) 261, 732
BisI GCNGC 2 cut(s) 207, 342
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 2 cut(s) 182, 630
BmeRI GACNNNNNGTC 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 182, 630
BmtI GCTAGC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 143, 617, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 619
Bse1I ACTGG 2 cut(s) 686, 880
Bse3DI GCAATG 1 cut(s) 827
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 182, 630
BseDI CCNNGG 3 cut(s) 143, 617, 628
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 181, 619
BseMI GCAATG 1 cut(s) 827
BseNI ACTGG 2 cut(s) 686, 880
BseRI GAGGAG 2 cut(s) 49, 116
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 218, 353
BsgI GTGCAG 2 cut(s) 482, 551
BshFI GGCC 2 cut(s) 760, 909
BslFI GGGAC 3 cut(s) 161, 408, 586
BslI CCNNNNNNNGG 2 cut(s) 181, 619
BsmAI GTCTC 3 cut(s) 61, 270, 627
BsmFI GGGAC 3 cut(s) 161, 408, 586
BsnI GGCC 2 cut(s) 760, 909
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 4 cut(s) 45, 165, 355, 830
BspACI CCGC 2 cut(s) 175, 444
BspANI GGCC 2 cut(s) 760, 909
BspLI GGNNCC 1 cut(s) 245
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 2 cut(s) 363, 838
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 827
BsrI ACTGG 2 cut(s) 686, 880
BssECI CCNNGG 3 cut(s) 143, 617, 628
BssMI GATC 4 cut(s) 45, 165, 355, 830
BssT1I CCWWGG 2 cut(s) 143, 617
Bst2UI CCWGG 2 cut(s) 182, 630
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 747
BstC8I GCNNGC 3 cut(s) 380, 733, 808
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 48, 168, 358, 833
BstMAI GTCTC 3 cut(s) 61, 270, 627
BstMBI GATC 4 cut(s) 45, 165, 355, 830
BstMWI GCNNNNNNNGC 3 cut(s) 450, 728, 747
BstNI CCWGG 2 cut(s) 182, 630
BstNSI RCATGY 3 cut(s) 77, 663, 810
BstSCI CCNGG 2 cut(s) 180, 628
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 218, 353
BstX2I RGATCY 2 cut(s) 355, 830
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 2 cut(s) 355, 830
BsuRI GGCC 2 cut(s) 760, 909
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 243, 516, 585, 785
Cac8I GCNNGC 3 cut(s) 380, 733, 808
CaiI CAGNNNCTG 2 cut(s) 875, 894
Csp6I GTAC 4 cut(s) 35, 82, 474, 685
CviAII CATG 7 cut(s) 74, 96, 294, 331, 471, 660, 807
CviQI GTAC 4 cut(s) 35, 82, 474, 685
DdeI CTNAG 1 cut(s) 401
DpnI GATC 4 cut(s) 47, 167, 357, 832
DpnII GATC 4 cut(s) 45, 165, 355, 830
DriI GACNNNNNGTC 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 143, 617
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 90, 492
EcoRII CCWGG 2 cut(s) 180, 628
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 143, 617
EcoT22I ATGCAT 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 143, 617
FaeI CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
FaqI GGGAC 3 cut(s) 161, 408, 586
FatI CATG 7 cut(s) 73, 95, 293, 330, 470, 659, 806
FauNDI CATATG 2 cut(s) 523, 718
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 207, 342
FspBI CTAG 2 cut(s) 261, 732
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 760, 909
Hin1II CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
HincII GTYRAC 2 cut(s) 595, 625
HindII GTYRAC 2 cut(s) 595, 625
HinfI GANTC 4 cut(s) 110, 149, 406, 430
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 5 cut(s) 84, 187, 395, 595, 625
Hpy188I TCNGA 5 cut(s) 109, 163, 360, 367, 411
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 5 cut(s) 84, 187, 395, 595, 625
HpyAV CCTTC 2 cut(s) 129, 362
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 189, 597
HpyF10VI GCNNNNNNNGC 3 cut(s) 450, 728, 747
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 2 cut(s) 189, 597
Hsp92II CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
Kzo9I GATC 4 cut(s) 45, 165, 355, 830
Lsp1109I GCAGC 2 cut(s) 218, 353
MaeI CTAG 2 cut(s) 261, 732
MaeII ACGT 2 cut(s) 189, 597
MaeIII GTNAC 2 cut(s) 491, 502
MalI GATC 4 cut(s) 47, 167, 357, 832
MbiI CCGCTC 1 cut(s) 444
MboI GATC 4 cut(s) 45, 165, 355, 830
MboII GAAGA 3 cut(s) 8, 40, 96
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 2 cut(s) 355, 830
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 4 cut(s) 249, 651, 736, 924
MlyI GAGTC 3 cut(s) 104, 143, 400
MnlI CCTC 5 cut(s) 70, 112, 137, 306, 899
Mph1103I ATGCAT 1 cut(s) 808
MseI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
MslI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 182, 630
MunI CAATTG 1 cut(s) 736
MvaI CCWGG 2 cut(s) 182, 630
MwoI GCNNNNNNNGC 3 cut(s) 450, 728, 747
NdeI CATATG 2 cut(s) 523, 718
NdeII GATC 4 cut(s) 45, 165, 355, 830
NheI GCTAGC 1 cut(s) 731
NlaIII CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
NlaIV GGNNCC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 3 cut(s) 77, 663, 810
OliI CACNNNNGTG 2 cut(s) 896, 915
PaeI GCATGC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 3 cut(s) 104, 143, 400
PpsI GAGTC 3 cut(s) 104, 143, 400
Psp1406I AACGTT 2 cut(s) 189, 597
Psp6I CCWGG 2 cut(s) 180, 628
PspGI CCWGG 2 cut(s) 180, 628
PspN4I GGNNCC 1 cut(s) 245
PstNI CAGNNNCTG 2 cut(s) 875, 894
PsuI RGATCY 2 cut(s) 355, 830
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 4 cut(s) 36, 83, 475, 686
RsaNI GTAC 4 cut(s) 35, 82, 474, 685
RseI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
SaqAI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 4 cut(s) 45, 165, 355, 830
SchI GAGTC 3 cut(s) 104, 143, 400
ScrFI CCNGG 2 cut(s) 182, 630
SduI GDGCHC 1 cut(s) 282
SmiMI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
SphI GCATGC 1 cut(s) 810
Sse9I AATT 4 cut(s) 249, 651, 736, 924
SsiI CCGC 2 cut(s) 175, 444
SspMI CTAG 2 cut(s) 261, 732
StyD4I CCNGG 2 cut(s) 180, 628
StyI CCWWGG 2 cut(s) 143, 617
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 192, 600
TaqI TCGA 2 cut(s) 337, 904
TasI AATT 4 cut(s) 249, 651, 736, 924
TatI WGTACW 3 cut(s) 34, 81, 473
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
Tru9I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
TscAI CASTG 4 cut(s) 243, 516, 585, 785
TseI GCWGC 2 cut(s) 206, 341
TspDTI ATGAA 4 cut(s) 40, 654, 705, 832
TspRI CASTG 4 cut(s) 243, 516, 585, 785
XapI RAATTY 2 cut(s) 249, 924
XceI RCATGY 3 cut(s) 77, 663, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XspI CTAG 2 cut(s) 261, 732
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.