RchiOBHm_Chr7g0185361

lysM domain-containing GPI-anchored protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010568
Physical Location & Seq
Forward (+)
5506290 .. 5508432
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16541

Sequence Viewer

Length: 1197 bp
ATGAGAACCCAACTTCTTCTGCAACTTCCTTTTGTACTGATATTGATCTTCATTGTCTCCTCCAAACTAACACATGCCAAGTACACAATAGAACCATGCACCTCTTCAGACTCCTGCCCTTCTCTCCTCTCCTATGTTCTCCCTTGGGACTCAAAGCTCTCCGAGATCGCTTACCGCTTCCAGGTAAACGTTTTTGATATAATGGCAGCCAACTCCATCAACATCACAACATCATCAGTGGGGAACCAAATTTTCGGTGCTAGGTCTCAACTTAAAGTGCCCATTTCGTGTCCATGTGTGGATGGTATCAGGAGGGTTTTGTTATCCTACATGGTTCGAGCAGCTGATAGCTTGGATCTGATATCAGAAAGTTATGGCAGGCTTGTGAGTGGTGAACAACTTAGGACTCTGAATGGGATTAGTCCCAAGAATCCATTGACGAGCGGTCAAAGCATTTTGGTGCAGTTGCCATGTACTTGCTTTAACAATAGTAACAATGGGGTTACTTCAGTGTTTATGTCATATGTGGTGCAGAGTGGGGAGAGCTTGAGCAACATTGGAGTGGAGTTTGGGACAACAGTGATGGAGTTGGTCAACGTTAATGGGCTTGACCAACCAAGGGTTGACCCTGGAGACATATTGGCTATTCCAATTTCAGCATGTTCATCAGCAAATCTTAACTGGTACAATGAGAGCTTAATAGTTCCAAATGGTTCATATGCCTTAACTGCTAGCAATTGCATTAAGTGCATTTGTAGGCCAAGCACTCTCAACTTGCAGTGTTTCCCATCTGGGATTGTCAATGCATGCTCACATTTGCAATGCAAAGGATCTAATCTTTTCATTGGAGATGTTTCCATCAACCAAACAGCTACTGGTTGTAATATCAGCACCTGTGTGTATCGAGGCCACAATGGTGGCAAAATTTTCAGGGGCTTAGTAAATTCTTCTCATTCCCATTGCTCATATGACGACTATTACAGCACAGTTTCACCGGTGGCATCTCCTAATAATCCTACAGTCCCGTTCATATCATTAGCTCCTTCACAATCACCATTTCCTAATCCAACTATTGGAGCAGGTGCCAACGCTCCTTCCAGTATACAAAATCCTAATAGTGCACGTAATAAGTATGGCAGATGGCTTACTCAAGCTCCATATTACAGTTTGTGGGTTGTCCTCTGCTTTTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

398

Amino Acids

43.01

Weight (kDa)

8.08

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 175 - 217 6.4e-10 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1070
Acc36I ACCTGC 1 cut(s) 1070
AccB1I GGYRCC 1 cut(s) 1082
AccB7I CCANNNNNTGG 1 cut(s) 1073
AccBSI CCGCTC 1 cut(s) 444
AccI GTMKAC 1 cut(s) 1102
AciI CCGC 2 cut(s) 175, 444
AclI AACGTT 2 cut(s) 189, 597
AclWI GGATC 2 cut(s) 363, 838
AcsI RAATTY 3 cut(s) 249, 924, 943
AcuI CTGAAG 2 cut(s) 90, 492
AfaI GTAC 4 cut(s) 36, 83, 475, 686
AfiI CCNNNNNNNGG 3 cut(s) 181, 619, 1073
AgeI ACCGGT 1 cut(s) 994
AhdI GACNNNNNGTC 1 cut(s) 444
AjnI CCWGG 2 cut(s) 180, 628
AleI CACNNNNGTG 2 cut(s) 896, 915
AluBI AGCT 8 cut(s) 157, 344, 351, 546, 696, 872, 1040, 1154
AluI AGCT 8 cut(s) 157, 344, 351, 546, 696, 872, 1040, 1154
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 3 cut(s) 61, 270, 627
Alw44I GTGCAC 1 cut(s) 1119
AlwI GGATC 2 cut(s) 363, 838
AlwNI CAGNNNCTG 2 cut(s) 875, 894
AoxI GGCC 2 cut(s) 758, 907
ApaLI GTGCAC 1 cut(s) 1119
ApeKI GCWGC 2 cut(s) 206, 341
ApoI RAATTY 3 cut(s) 249, 924, 943
AsiGI ACCGGT 1 cut(s) 994
AsuHPI GGTGA 3 cut(s) 404, 984, 1044
AsuNHI GCTAGC 1 cut(s) 731
BaeGI GKGCMC 2 cut(s) 282, 1123
BanI GGYRCC 1 cut(s) 1082
Bbv12I GWGCWC 1 cut(s) 1123
BbvI GCAGC 2 cut(s) 218, 353
BccI CCATC 6 cut(s) 224, 296, 577, 796, 866, 1134
BciT130I CCWGG 2 cut(s) 182, 630
BcoDI GTCTC 3 cut(s) 61, 270, 627
BfaI CTAG 2 cut(s) 261, 732
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 1070
BisI GCNGC 2 cut(s) 207, 342
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 2 cut(s) 182, 630
BmeRI GACNNNNNGTC 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 245, 1084
BmrFI CCNGG 2 cut(s) 182, 630
BmsI GCATC 1 cut(s) 1010
BmtI GCTAGC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 568, 1134
BsaAI YACGTR 1 cut(s) 1124
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 143, 617, 628
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 619, 1073
Bse118I RCCGGY 1 cut(s) 994
Bse1I ACTGG 3 cut(s) 686, 880, 1098
Bse3DI GCAATG 2 cut(s) 827, 958
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 182, 630
BseDI CCNNGG 3 cut(s) 143, 617, 628
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 181, 619, 1073
BseMI GCAATG 2 cut(s) 827, 958
BseNI ACTGG 3 cut(s) 686, 880, 1098
BseRI GAGGAG 2 cut(s) 49, 116
BseSI GKGCMC 2 cut(s) 282, 1123
BseXI GCAGC 2 cut(s) 218, 353
BsgI GTGCAG 2 cut(s) 482, 551
BshFI GGCC 2 cut(s) 760, 909
BshNI GGYRCC 1 cut(s) 1082
BshTI ACCGGT 1 cut(s) 994
BsiHKAI GWGCWC 1 cut(s) 1123
BsiSI CCGG 1 cut(s) 995
BslFI GGGAC 4 cut(s) 161, 408, 586, 1007
BslI CCNNNNNNNGG 3 cut(s) 181, 619, 1073
BsmAI GTCTC 3 cut(s) 61, 270, 627
BsmFI GGGAC 4 cut(s) 161, 408, 586, 1007
BsnI GGCC 2 cut(s) 760, 909
Bso31I GGTCTC 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 282, 1123
Bsp143I GATC 4 cut(s) 45, 165, 355, 830
BspACI CCGC 2 cut(s) 175, 444
BspANI GGCC 2 cut(s) 760, 909
BspLI GGNNCC 2 cut(s) 245, 1084
BspMI ACCTGC 1 cut(s) 1070
BspOI GCTAGC 1 cut(s) 735
BspPI GGATC 2 cut(s) 363, 838
BspT107I GGYRCC 1 cut(s) 1082
BspTNI GGTCTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 444
BsrDI GCAATG 2 cut(s) 827, 958
BsrFI RCCGGY 1 cut(s) 994
BsrI ACTGG 3 cut(s) 686, 880, 1098
BssAI RCCGGY 1 cut(s) 994
BssECI CCNNGG 3 cut(s) 143, 617, 628
BssMI GATC 4 cut(s) 45, 165, 355, 830
BssNAI GTATAC 1 cut(s) 1103
BssT1I CCWWGG 2 cut(s) 143, 617
Bst1107I GTATAC 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 182, 630
Bst4CI ACNGT 4 cut(s) 580, 988, 1021, 1166
Bst6I CTCTTC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 1124
BstC8I GCNNGC 3 cut(s) 380, 733, 808
BstDEI CTNAG 2 cut(s) 401, 937
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 48, 168, 358, 833
BstMAI GTCTC 3 cut(s) 61, 270, 627
BstMBI GATC 4 cut(s) 45, 165, 355, 830
BstMWI GCNNNNNNNGC 3 cut(s) 450, 728, 747
BstNI CCWGG 2 cut(s) 182, 630
BstNSI RCATGY 3 cut(s) 77, 663, 810
BstSCI CCNGG 2 cut(s) 180, 628
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 282, 1123
BstV1I GCAGC 2 cut(s) 218, 353
BstX2I RGATCY 2 cut(s) 355, 830
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 2 cut(s) 355, 830
BstZ17I GTATAC 1 cut(s) 1103
BsuRI GGCC 2 cut(s) 760, 909
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 785
BtsIMutI CAGTG 4 cut(s) 243, 516, 585, 785
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 3 cut(s) 380, 733, 808
CaiI CAGNNNCTG 2 cut(s) 875, 894
Cfr10I RCCGGY 1 cut(s) 994
Csp6I GTAC 4 cut(s) 35, 82, 474, 685
CspAI ACCGGT 1 cut(s) 994
CviAII CATG 7 cut(s) 74, 96, 294, 331, 471, 660, 807
CviQI GTAC 4 cut(s) 35, 82, 474, 685
DdeI CTNAG 2 cut(s) 401, 937
DpnI GATC 4 cut(s) 47, 167, 357, 832
DpnII GATC 4 cut(s) 45, 165, 355, 830
DriI GACNNNNNGTC 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 143, 617
Eco31I GGTCTC 1 cut(s) 270
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 2 cut(s) 90, 492
EcoRII CCWGG 2 cut(s) 180, 628
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 143, 617
EcoT22I ATGCAT 1 cut(s) 808
ErhI CCWWGG 2 cut(s) 143, 617
FaeI CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
FaqI GGGAC 4 cut(s) 161, 408, 586, 1007
FatI CATG 7 cut(s) 73, 95, 293, 330, 470, 659, 806
FauNDI CATATG 3 cut(s) 523, 718, 967
FblI GTMKAC 1 cut(s) 1102
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 207, 342
FspBI CTAG 2 cut(s) 261, 732
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 760, 909
HapII CCGG 1 cut(s) 995
Hin1II CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
HincII GTYRAC 2 cut(s) 595, 625
HindII GTYRAC 2 cut(s) 595, 625
HinfI GANTC 4 cut(s) 110, 149, 406, 430
HpaII CCGG 1 cut(s) 995
HphI GGTGA 3 cut(s) 404, 984, 1044
Hpy166II GTNNAC 7 cut(s) 84, 187, 395, 595, 625, 1103, 1121
Hpy188I TCNGA 5 cut(s) 109, 163, 360, 367, 411
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 7 cut(s) 84, 187, 395, 595, 625, 1103, 1121
HpyAV CCTTC 3 cut(s) 129, 1053, 1104
HpyCH4III ACNGT 4 cut(s) 580, 988, 1021, 1166
HpyCH4IV ACGT 3 cut(s) 189, 597, 1123
HpyF10VI GCNNNNNNNGC 3 cut(s) 450, 728, 747
HpyF3I CTNAG 2 cut(s) 401, 937
HpySE526I ACGT 3 cut(s) 189, 597, 1123
Hsp92II CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
Kzo9I GATC 4 cut(s) 45, 165, 355, 830
LmnI GCTCC 4 cut(s) 1045, 1076, 1096, 1159
Lsp1109I GCAGC 2 cut(s) 218, 353
LweI GCATC 1 cut(s) 1010
MaeI CTAG 2 cut(s) 261, 732
MaeII ACGT 3 cut(s) 189, 597, 1123
MaeIII GTNAC 2 cut(s) 491, 502
MalI GATC 4 cut(s) 47, 167, 357, 832
MbiI CCGCTC 1 cut(s) 444
MboI GATC 4 cut(s) 45, 165, 355, 830
MboII GAAGA 4 cut(s) 8, 40, 96, 939
MfeI CAATTG 1 cut(s) 736
MflI RGATCY 2 cut(s) 355, 830
MhlI GDGCHC 2 cut(s) 282, 1123
MluCI AATT 5 cut(s) 249, 651, 736, 924, 943
MlyI GAGTC 3 cut(s) 104, 143, 400
MmeI TCCRAC 1 cut(s) 1091
MnlI CCTC 6 cut(s) 70, 112, 137, 306, 899, 1190
Mph1103I ATGCAT 1 cut(s) 808
MseI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
MslI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 2 cut(s) 182, 630
MunI CAATTG 1 cut(s) 736
MvaI CCWGG 2 cut(s) 182, 630
MwoI GCNNNNNNNGC 3 cut(s) 450, 728, 747
NdeI CATATG 3 cut(s) 523, 718, 967
NdeII GATC 4 cut(s) 45, 165, 355, 830
NheI GCTAGC 1 cut(s) 731
NlaIII CATG 7 cut(s) 77, 99, 297, 334, 474, 663, 810
NlaIV GGNNCC 2 cut(s) 245, 1084
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 3 cut(s) 77, 663, 810
OliI CACNNNNGTG 2 cut(s) 896, 915
PaeI GCATGC 1 cut(s) 810
PaqCI CACCTGC 1 cut(s) 1070
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 1073
PinAI ACCGGT 1 cut(s) 994
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 3 cut(s) 104, 143, 400
PpsI GAGTC 3 cut(s) 104, 143, 400
Ppu21I YACGTR 1 cut(s) 1124
Psp1406I AACGTT 2 cut(s) 189, 597
Psp6I CCWGG 2 cut(s) 180, 628
PspGI CCWGG 2 cut(s) 180, 628
PspN4I GGNNCC 2 cut(s) 245, 1084
PstNI CAGNNNCTG 2 cut(s) 875, 894
PsuI RGATCY 2 cut(s) 355, 830
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 4 cut(s) 36, 83, 475, 686
RsaNI GTAC 4 cut(s) 35, 82, 474, 685
RseI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
SaqAI TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 4 cut(s) 45, 165, 355, 830
SchI GAGTC 3 cut(s) 104, 143, 400
ScrFI CCNGG 2 cut(s) 182, 630
SduI GDGCHC 2 cut(s) 282, 1123
SfaNI GCATC 1 cut(s) 1010
SfcI CTRYAG 1 cut(s) 1017
SgrAI CRCCGGYG 1 cut(s) 994
SmiMI CAYNNNNRTG 4 cut(s) 458, 560, 896, 915
SmlI CTYRAG 2 cut(s) 547, 1149
SmoI CTYRAG 2 cut(s) 547, 1149
SphI GCATGC 1 cut(s) 810
Sse9I AATT 5 cut(s) 249, 651, 736, 924, 943
SsiI CCGC 2 cut(s) 175, 444
SspMI CTAG 2 cut(s) 261, 732
StyD4I CCNGG 2 cut(s) 180, 628
StyI CCWWGG 2 cut(s) 143, 617
TaaI ACNGT 4 cut(s) 580, 988, 1021, 1166
TaiI ACGT 3 cut(s) 192, 600, 1126
TaqI TCGA 2 cut(s) 337, 904
TasI AATT 5 cut(s) 249, 651, 736, 924, 943
TatI WGTACW 3 cut(s) 34, 81, 473
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
Tru9I TTAA 7 cut(s) 273, 483, 600, 678, 698, 725, 744
TscAI CASTG 4 cut(s) 243, 516, 585, 785
TseI GCWGC 2 cut(s) 206, 341
TspDTI ATGAA 5 cut(s) 40, 654, 705, 832, 1018
TspRI CASTG 4 cut(s) 243, 516, 585, 785
Van91I CCANNNNNTGG 1 cut(s) 1073
VneI GTGCAC 1 cut(s) 1119
XapI RAATTY 3 cut(s) 249, 924, 943
XceI RCATGY 3 cut(s) 77, 663, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XmiI GTMKAC 1 cut(s) 1102
XspI CTAG 2 cut(s) 261, 732
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.