FvH4_5g12290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013424
Physical Location & Seq
Forward (+)
6913090 .. 6914520
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12290.t1

Sequence Viewer

Length: 576 bp
ATGGCTCTAACCATAGCCAACAGTGGCACCACCAACGGCGGAGCCAGAGCCCTTTACAGAAGCTCCACCACACACCCCTACACCAACCTCTCCTCCCAACGCCACGTCCTCTTCCCTCGTCTCTCCCCAAGAAGAACCCTCCACGTGGTGTCCGCCAAGCGCTTCACCTCCCGAACCGGGAGGCTCGACAACAATAACAACAAGAGGAGCAACACCACGACCAAAGACCAAGAACAAGACCAACGTACTGCGGAGATTGAAAGCCTCGCTGCGGAGAACATTGACGATGGCTACTTCTTGCCTAAGCTTCCGGGAGATGAGCCGGATTTCTGGGAAGGTGAACAGTGGGACGGTCTTGGGTTCTTCGTGGAGTACTTGTGGGCTTTTGGTTTTGGCTTTGCGCTTATTGCAGCAATTGCAGCTGTTGCTACATTCAATGAAGGGGCAACTGATTTCAAGGAGACTCCTACTTACAAAGATGCTATCCAGTCCCGCGAGTTGCTAGAAGAACCAGAGGGATCAGGCCCTGATGTCTTTGAATCCAACCCTACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.2

Weight (kDa)

4.82

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73885
fragaria_vesca FvH4_5g12290
malus_domestica MD06G1215200.v1.1 MD14G1226000.v1.1
prunus_persica Prupe.5G220500_v2.0.a1
pyrus_communis pycom06g19180 pycom14g18750
rosa_chinensis RchiOBHm_Chr7g0185261
rosa_laevigata RLG00000004926
rosa_multiflora Rmu_co7958283.1_g000001 Rmu_sc0008496.1_g000017
rosa_roxburghii Rroxscaffold_3G00269100
rosa_rugosa Rorug06G0467400
rosa_samantha Rh7AG075600 Rh7BG071900 Rh7CG073100 Rh7DG072500
rosa_wichuraiana Rw7G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AccII CGCG 1 cut(s) 495
AciI CCGC 5 cut(s) 39, 153, 251, 272, 493
AclWI GGATC 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 145
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 2 cut(s) 247, 374
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 145, 177, 271
AgsI TTSAA 4 cut(s) 260, 436, 457, 539
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 3 cut(s) 63, 307, 422
AluI AGCT 3 cut(s) 63, 307, 422
Alw26I GTCTC 2 cut(s) 125, 455
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 1 cut(s) 527
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 1 cut(s) 523
ApeKI GCWGC 3 cut(s) 269, 410, 419
AspLEI GCGC 2 cut(s) 162, 403
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 2 cut(s) 178, 312
AsuHPI GGTGA 2 cut(s) 157, 350
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 145
BbvI GCAGC 3 cut(s) 256, 422, 431
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 52
BcnI CCSGG 2 cut(s) 178, 312
BcoDI GTCTC 2 cut(s) 125, 455
BfaI CTAG 2 cut(s) 503, 564
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 3 cut(s) 270, 411, 420
BlsI GCNGC 3 cut(s) 271, 412, 421
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 178, 312
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 28, 43, 561
BmrFI CCNGG 2 cut(s) 178, 312
BmsI GCATC 1 cut(s) 469
Bpu10I CCTNAGC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 178, 312
BsaAI YACGTR 1 cut(s) 145
BsaXI ACNNNNNCTCC 6 cut(s) 47, 77, 77, 107, 362, 392
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 177, 271
Bse1I ACTGG 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 145, 177, 271
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 2 cut(s) 82, 220
BseXI GCAGC 3 cut(s) 256, 422, 431
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 3 cut(s) 177, 311, 323
BslFI GGGAC 2 cut(s) 362, 475
BslI CCNNNNNNNGG 3 cut(s) 145, 177, 271
BsmAI GTCTC 2 cut(s) 125, 455
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 2 cut(s) 362, 475
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 518
BspACI CCGC 5 cut(s) 39, 153, 251, 272, 493
BspANI GGCC 1 cut(s) 525
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 28, 43, 561
BspPI GGATC 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 487
BssMI GATC 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 23, 345, 353
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 2 cut(s) 416, 425
BstBAI YACGTR 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 2 cut(s) 162, 403
BstKTI GATC 1 cut(s) 521
BstMAI GTCTC 2 cut(s) 125, 455
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 4 cut(s) 407, 416, 419, 425
BstSCI CCNGG 2 cut(s) 176, 310
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 256, 422, 431
BsuRI GGCC 1 cut(s) 525
BtrI CACGTC 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 28, 350
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 2 cut(s) 162, 403
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 246, 373
CviQI GTAC 2 cut(s) 246, 373
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
DraIII CACNNNGTG 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 2 cut(s) 54, 142
Eco24I GRGCYC 1 cut(s) 52
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 524
EcoT38I GRGCYC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 125
FaiI YATR 1 cut(s) 14
FaqI GGGAC 2 cut(s) 362, 475
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 3 cut(s) 270, 411, 420
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 270, 411, 420
FspBI CTAG 2 cut(s) 503, 564
GlaI GCGC 2 cut(s) 161, 402
GluI GCNGC 3 cut(s) 270, 411, 420
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 525
HapII CCGG 3 cut(s) 177, 311, 323
HhaI GCGC 2 cut(s) 162, 403
Hin6I GCGC 2 cut(s) 160, 401
HinP1I GCGC 2 cut(s) 160, 401
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 463, 539
HpaII CCGG 3 cut(s) 177, 311, 323
HphI GGTGA 2 cut(s) 157, 350
Hpy166II GTNNAC 1 cut(s) 341
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 329, 434
HpyCH4III ACNGT 3 cut(s) 23, 345, 353
HpyCH4IV ACGT 3 cut(s) 105, 144, 244
HpyCH4V TGCA 2 cut(s) 410, 419
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 416, 419, 425
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 3 cut(s) 105, 144, 244
HspAI GCGC 2 cut(s) 160, 401
Kzo9I GATC 1 cut(s) 518
LmnI GCTCC 4 cut(s) 41, 68, 207, 565
LpnPI CCDG 9 cut(s) 58, 190, 316, 324, 336, 500, 507, 525, 540
Lsp1109I GCAGC 3 cut(s) 256, 422, 431
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 503, 564
MaeII ACGT 3 cut(s) 105, 144, 244
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 4 cut(s) 103, 144, 355, 518
MfeI CAATTG 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 414
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 3 cut(s) 177, 311, 323
MspR9I CCNGG 2 cut(s) 178, 312
MunI CAATTG 1 cut(s) 414
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 4 cut(s) 407, 416, 419, 425
NciI CCSGG 2 cut(s) 178, 312
NdeII GATC 1 cut(s) 518
NlaIV GGNNCC 3 cut(s) 28, 43, 561
PfeI GAWTC 1 cut(s) 539
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 3 cut(s) 271, 412, 421
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 145
PmlI CACGTG 1 cut(s) 145
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 145
PspCI CACGTG 1 cut(s) 145
PspN4I GGNNCC 3 cut(s) 28, 43, 561
PspPI GGNCC 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 247, 374
RsaNI GTAC 2 cut(s) 246, 373
SatI GCNGC 3 cut(s) 270, 411, 420
Sau3AI GATC 1 cut(s) 518
Sau96I GGNCC 1 cut(s) 524
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 178, 312
SduI GDGCHC 1 cut(s) 52
SetI ASST 9 cut(s) 65, 90, 108, 147, 170, 247, 309, 340, 424
SfaNI GCATC 1 cut(s) 469
Sse9I AATT 1 cut(s) 414
SsiI CCGC 5 cut(s) 39, 153, 251, 272, 493
SspMI CTAG 2 cut(s) 503, 564
StyD4I CCNGG 2 cut(s) 176, 310
TaaI ACNGT 3 cut(s) 23, 345, 353
TaiI ACGT 3 cut(s) 108, 147, 247
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 414
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 2 cut(s) 28, 350
TseI GCWGC 3 cut(s) 269, 410, 419
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 2 cut(s) 28, 350
XspI CTAG 2 cut(s) 503, 564
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.