pycom14g18750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013424
Physical Location & Seq
Reverse (-)
20294985 .. 20296420
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18750.1

Sequence Viewer

Length: 762 bp
ATGGACCCGATGGTCCAATATGGAAACAATTCGGGTCAAGTTTATGGAAAAACTTCCATTAGCATCTCCCCATCCCATCCACACATACTGAAGAGATATTTCCACCTTGCTCATTTAGCTTTGTGCTGCTACGAACACAGAGACTCTCACTCTCCTCCCCTCATGGCTCTTACCATAGCCAACAGTGGAAGTTCCACTGGCGGAGCAAGAGTCCTCTACAGCAGCTCCACCACCACCAGACAGTACCCCTACACCAACCTTTCCTTTCAACGCCACCTCCTCTTTCCTTCCTCCTCCAGAAGAGCCCTCTACGTGGTTTCAGCCAAGAGGTTTACTTCCAGAACTGGGAGGACCGACGGCAAGAACAGGAAGAGCACCACAACTACCAGAGACCAAGAACAAGACATGATGGGGTCGCAACGGACGGCTGAGATTGAAAACGTAGGTGGTGGGGTTGTGGGAAACGTTGATGATGGGTATTTCTTGCCTAAGCTTCCGGGGGATGAGCCTTGCTTCTGGGAAGGTGAAAAATGGGATTGGCTTGGATTCTTTGTGGAGTACTTGTGGGCTTTTGGTATTGGCTTTGCGCTTATTGCTTGCTTAGTTGCTGCTACTTCTTACAATGAAGGAGCAACTGATTTCAAGGAGACTCCAGTCTACAAAGATTCGTTTCAGTCTCGGGAGTTTTTGGAAGAACCGGAGGCATCCAACCAGGATGTCTTCGAATCCAACCCGACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.26

Weight (kDa)

5.67

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73885
fragaria_vesca FvH4_5g12290
malus_domestica MD06G1215200.v1.1 MD14G1226000.v1.1
prunus_persica Prupe.5G220500_v2.0.a1
pyrus_communis pycom06g19180 pycom14g18750
rosa_chinensis RchiOBHm_Chr7g0185261
rosa_laevigata RLG00000004926
rosa_multiflora Rmu_co7958283.1_g000001 Rmu_sc0008496.1_g000017
rosa_roxburghii Rroxscaffold_3G00269100
rosa_rugosa Rorug06G0467400
rosa_samantha Rh7AG075600 Rh7BG071900 Rh7CG073100 Rh7DG072500
rosa_wichuraiana Rw7G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 657
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 465
AcuI CTGAAG 2 cut(s) 110, 759
AfaI GTAC 2 cut(s) 245, 560
AfiI CCNNNNNNNGG 2 cut(s) 313, 345
AgsI TTSAA 3 cut(s) 269, 437, 643
AjnI CCWGG 1 cut(s) 711
AluBI AGCT 3 cut(s) 119, 225, 493
AluI AGCT 3 cut(s) 119, 225, 493
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 4 cut(s) 135, 384, 641, 681
Ama87I CYCGRG 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 126, 222, 608
Asp700I GAANNNNTTC 2 cut(s) 28, 52
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 3 cut(s) 4, 13, 351
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 536
AsuII TTCGAA 1 cut(s) 723
AvaI CYCGRG 1 cut(s) 678
AvaII GGWCC 3 cut(s) 4, 13, 351
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 712
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 113, 234, 595
BccI CCATC 5 cut(s) 4, 79, 84, 403, 467
BceAI ACGGC 2 cut(s) 373, 441
BciT130I CCWGG 1 cut(s) 713
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 4 cut(s) 135, 384, 641, 681
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 3 cut(s) 127, 223, 609
BlsI GCNGC 3 cut(s) 128, 224, 610
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 2 cut(s) 498, 713
Bme18I GGWCC 3 cut(s) 4, 13, 351
BmeT110I CYCGRG 1 cut(s) 678
BmgT120I GGNCC 3 cut(s) 4, 13, 351
BmiI GGNNCC 2 cut(s) 6, 747
BmrFI CCNGG 2 cut(s) 498, 713
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 72, 713
BmuI ACTGGG 1 cut(s) 354
BoxI GACNNNNGTC 1 cut(s) 653
BpiI GAAGAC 1 cut(s) 712
BpmI CTGGAG 2 cut(s) 280, 636
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 497
BsaWI WCCGGW 1 cut(s) 697
BsaXI ACNNNNNCTCC 8 cut(s) 195, 209, 225, 239, 261, 291, 548, 578
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 345
Bse1I ACTGG 3 cut(s) 202, 349, 653
BseBI CCWGG 1 cut(s) 713
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 5 cut(s) 71, 76, 508, 704, 721
BseLI CCNNNNNNNGG 2 cut(s) 313, 345
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 3 cut(s) 202, 349, 653
BseRI GAGGAG 3 cut(s) 144, 269, 283
BseXI GCAGC 3 cut(s) 113, 234, 595
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 2 cut(s) 497, 698
BslI CCNNNNNNNGG 2 cut(s) 313, 345
BsmAI GTCTC 4 cut(s) 135, 384, 641, 681
Bso31I GGTCTC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 723
Bsp1286I GDGCHC 2 cut(s) 307, 377
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 6, 747
BspQI GCTCTTC 2 cut(s) 295, 365
BspT104I TTCGAA 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 384
BsrI ACTGG 3 cut(s) 202, 349, 653
BssECI CCNNGG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 713
Bst4CI ACNGT 2 cut(s) 185, 243
Bst6I CTCTTC 3 cut(s) 86, 295, 365
BstBAI YACGTR 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 3 cut(s) 429, 489, 601
BstF5I GGATG 5 cut(s) 71, 76, 508, 704, 721
BstHHI GCGC 1 cut(s) 589
BstMAI GTCTC 4 cut(s) 135, 384, 641, 681
BstMWI GCNNNNNNNGC 2 cut(s) 116, 593
BstNI CCWGG 1 cut(s) 713
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 496, 711
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 3 cut(s) 113, 234, 595
BstV2I GAAGAC 1 cut(s) 712
BtsCI GGATG 5 cut(s) 71, 76, 508, 704, 721
BtsIMutI CAGTG 2 cut(s) 190, 195
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 3 cut(s) 4, 13, 351
Csp6I GTAC 2 cut(s) 244, 559
CviAII CATG 2 cut(s) 163, 406
CviQI GTAC 2 cut(s) 244, 559
DdeI CTNAG 3 cut(s) 429, 489, 601
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 3 cut(s) 86, 295, 365
EarI CTCTTC 3 cut(s) 86, 295, 365
EciI GGCGGA 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 384
Eco47I GGWCC 3 cut(s) 4, 13, 351
Eco57I CTGAAG 2 cut(s) 110, 759
Eco88I CYCGRG 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 307
FaeI CATG 2 cut(s) 166, 409
FaiI YATR 6 cut(s) 21, 45, 86, 164, 176, 407
FatI CATG 2 cut(s) 162, 405
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 127, 223, 609
FokI GGATG 5 cut(s) 58, 63, 515, 691, 728
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 3 cut(s) 127, 223, 609
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 588
GluI GCNGC 3 cut(s) 127, 223, 609
GsuI CTGGAG 2 cut(s) 280, 636
HapII CCGG 2 cut(s) 497, 698
HhaI GCGC 1 cut(s) 589
Hin1II CATG 2 cut(s) 166, 409
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 6 cut(s) 143, 210, 546, 649, 665, 725
HpaII CCGG 2 cut(s) 497, 698
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 2 cut(s) 333, 658
Hpy188III TCNNGA 3 cut(s) 297, 339, 680
Hpy8I GTNNAC 2 cut(s) 333, 658
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 3 cut(s) 297, 515, 620
HpyCH4III ACNGT 2 cut(s) 185, 243
HpyCH4IV ACGT 3 cut(s) 312, 441, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 593
HpyF3I CTNAG 3 cut(s) 429, 489, 601
HpySE526I ACGT 3 cut(s) 312, 441, 465
Hsp92II CATG 2 cut(s) 166, 409
HspAI GCGC 1 cut(s) 587
LguI GCTCTTC 2 cut(s) 295, 365
LmnI GCTCC 4 cut(s) 203, 230, 629, 751
Lsp1109I GCAGC 3 cut(s) 113, 234, 595
LweI GCATC 2 cut(s) 72, 713
MaeI CTAG 1 cut(s) 750
MaeII ACGT 3 cut(s) 312, 441, 465
MboII GAAGA 5 cut(s) 103, 312, 382, 704, 712
MhlI GDGCHC 2 cut(s) 307, 377
MluCI AATT 1 cut(s) 28
MlyI GAGTC 3 cut(s) 137, 219, 643
MmeI TCCRAC 2 cut(s) 732, 753
MroXI GAANNNNTTC 2 cut(s) 28, 52
MspI CCGG 2 cut(s) 497, 698
MspR9I CCNGG 2 cut(s) 498, 713
MvaI CCWGG 1 cut(s) 713
MwoI GCNNNNNNNGC 2 cut(s) 116, 593
NciI CCSGG 1 cut(s) 498
NlaIII CATG 2 cut(s) 166, 409
NlaIV GGNNCC 2 cut(s) 6, 747
NspV TTCGAA 1 cut(s) 723
PciSI GCTCTTC 2 cut(s) 295, 365
PdmI GAANNNNTTC 2 cut(s) 28, 52
PfeI GAWTC 3 cut(s) 546, 665, 725
PkrI GCNGC 3 cut(s) 128, 224, 610
PleI GAGTC 3 cut(s) 137, 218, 643
PpsI GAGTC 3 cut(s) 137, 218, 643
Ppu21I YACGTR 1 cut(s) 313
PshAI GACNNNNGTC 1 cut(s) 653
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 711
PspGI CCWGG 1 cut(s) 711
PspN4I GGNNCC 2 cut(s) 6, 747
PspPI GGNCC 3 cut(s) 4, 13, 351
RsaI GTAC 2 cut(s) 245, 560
RsaNI GTAC 2 cut(s) 244, 559
SapI GCTCTTC 2 cut(s) 295, 365
SatI GCNGC 3 cut(s) 127, 223, 609
Sau96I GGNCC 3 cut(s) 4, 13, 351
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 3 cut(s) 137, 219, 643
ScrFI CCNGG 2 cut(s) 498, 713
SduI GDGCHC 2 cut(s) 307, 377
SfaNI GCATC 2 cut(s) 72, 713
SfcI CTRYAG 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 3 cut(s) 4, 13, 351
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 201
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 496, 711
TaaI ACNGT 2 cut(s) 185, 243
TaiI ACGT 3 cut(s) 315, 444, 468
TaqI TCGA 1 cut(s) 723
TaqII GACCGA 1 cut(s) 368
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 3 cut(s) 546, 665, 725
TscAI CASTG 2 cut(s) 190, 202
TseI GCWGC 3 cut(s) 126, 222, 608
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 2 cut(s) 190, 202
VpaK11BI GGWCC 3 cut(s) 4, 13, 351
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 2 cut(s) 28, 52
XspI CTAG 1 cut(s) 750
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.