Rh7BG071900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013424
Physical Location & Seq
Reverse (-)
4882736 .. 4884188
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG071900.1

Sequence Viewer

Length: 573 bp
ATGGCTCTAACAATAGCCAACCGTGGCGGTACCAACGGCGGAGCCAGAGTCCTCTACAGAAGCTCCACCACACACCCGTACACCAACCTCTCCTCCCAACGCCACGTCCTCTTCCCCCTCTCCCCAAGAAGAACCCTCCACGTGGTCTCCGCCAAGCGCTTCACCTCCAGAACCGGGAGGCTGGCCAACAAGAACAACAAGAGGAGCAACACCACGACCAAGGACCAAGAACAAGACCAACGGACGGCGGAGATTGAAAGCCTCGCTGCCGATAACATTGATGATGGCTACTTCTTGCCTAAGCTTCCGGGAGATGAGCCGGATTTCTGGGAAGGTGAACAGTGGGACGGTCTTGGATTCTTTGTCGAGTACTTGTGGGCTTTTGGTTTTGGGTTTGCGCTTATTGGAGCAATTGCAGCTGCTGCTACATTCAATGAAGGGGCAACTGATTTCAAGGAGACTCCTACTTACAAAGATGCGATCCAGTCTCGCGAATTACTAGAAGAACCAGAGGGTTCTAGCCCGGATGTCTTTGAATCCAACCCAACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.04

Weight (kDa)

4.97

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73885
fragaria_vesca FvH4_5g12290
malus_domestica MD06G1215200.v1.1 MD14G1226000.v1.1
prunus_persica Prupe.5G220500_v2.0.a1
pyrus_communis pycom06g19180 pycom14g18750
rosa_chinensis RchiOBHm_Chr7g0185261
rosa_laevigata RLG00000004926
rosa_multiflora Rmu_co7958283.1_g000001 Rmu_sc0008496.1_g000017
rosa_roxburghii Rroxscaffold_3G00269100
rosa_rugosa Rorug06G0467400
rosa_samantha Rh7AG075600 Rh7BG071900 Rh7CG073100 Rh7DG072500
rosa_wichuraiana Rw7G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 492
AciI CCGC 4 cut(s) 27, 39, 150, 248
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 570
AcvI CACGTG 1 cut(s) 142
AfaI GTAC 3 cut(s) 31, 80, 371
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 142, 174, 244
AgsI TTSAA 4 cut(s) 257, 433, 454, 536
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 3 cut(s) 63, 304, 419
AluI AGCT 3 cut(s) 63, 304, 419
Alw26I GTCTC 3 cut(s) 151, 452, 492
AlwI GGATC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 266, 416, 419, 422
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 159, 400
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 3 cut(s) 175, 309, 524
AsuHPI GGTGA 2 cut(s) 154, 347
AvaII GGWCC 1 cut(s) 223
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 142
BbvI GCAGC 4 cut(s) 253, 406, 409, 428
BccI CCATC 1 cut(s) 278
BceAI ACGGC 2 cut(s) 52, 261
BcnI CCSGG 3 cut(s) 175, 309, 524
BcoDI GTCTC 3 cut(s) 151, 452, 492
BfaI CTAG 3 cut(s) 500, 519, 561
BfmI CTRYAG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 4 cut(s) 267, 417, 420, 423
BlsI GCNGC 4 cut(s) 268, 418, 421, 424
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 3 cut(s) 175, 309, 524
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 3 cut(s) 31, 43, 558
BmrFI CCNGG 3 cut(s) 175, 309, 524
BmsI GCATC 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 3 cut(s) 175, 309, 524
BsaAI YACGTR 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 22, 219
BsaXI ACNNNNNCTCC 8 cut(s) 33, 47, 63, 77, 77, 107, 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 174, 244
Bse1I ACTGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 22, 219
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 3 cut(s) 142, 174, 244
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 2 cut(s) 82, 217
BseXI GCAGC 4 cut(s) 253, 406, 409, 428
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 174, 308, 320, 524
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 142, 174, 244
BsmAI GTCTC 3 cut(s) 151, 452, 492
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 480
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 4 cut(s) 27, 39, 150, 248
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 31, 43, 558
BspPI GGATC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 22, 219
BssMI GATC 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 3 cut(s) 23, 342, 350
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 422
BstBAI YACGTR 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 159, 400
BstKTI GATC 1 cut(s) 483
BstMAI GTCTC 3 cut(s) 151, 452, 492
BstMBI GATC 1 cut(s) 480
BstMWI GCNNNNNNNGC 2 cut(s) 416, 422
BstSCI CCNGG 3 cut(s) 173, 307, 522
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 253, 406, 409, 428
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 347
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 2 cut(s) 159, 400
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 30, 79, 370
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviQI GTAC 3 cut(s) 30, 79, 370
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 482
DpnII GATC 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 3 cut(s) 54, 139, 263
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 570
Eco72I CACGTG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaqI GGGAC 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 267, 417, 420, 423
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 4 cut(s) 267, 417, 420, 423
FspBI CTAG 3 cut(s) 500, 519, 561
GlaI GCGC 2 cut(s) 158, 399
GluI GCNGC 4 cut(s) 267, 417, 420, 423
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 1 cut(s) 185
HapII CCGG 4 cut(s) 174, 308, 320, 524
HhaI GCGC 2 cut(s) 159, 400
Hin6I GCGC 2 cut(s) 157, 398
HinP1I GCGC 2 cut(s) 157, 398
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 4 cut(s) 48, 357, 460, 536
HpaII CCGG 4 cut(s) 174, 308, 320, 524
HphI GGTGA 2 cut(s) 154, 347
Hpy166II GTNNAC 2 cut(s) 81, 338
Hpy188III TCNNGA 2 cut(s) 168, 491
Hpy8I GTNNAC 2 cut(s) 81, 338
HpyAV CCTTC 2 cut(s) 326, 431
HpyCH4III ACNGT 3 cut(s) 23, 342, 350
HpyCH4IV ACGT 2 cut(s) 105, 141
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 422
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 105, 141
HspAI GCGC 2 cut(s) 157, 398
KpnI GGTACC 1 cut(s) 33
Kzo9I GATC 1 cut(s) 480
LmnI GCTCC 5 cut(s) 41, 68, 204, 407, 562
Lsp1109I GCAGC 4 cut(s) 253, 406, 409, 428
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 500, 519, 561
MaeII ACGT 2 cut(s) 105, 141
MalI GATC 1 cut(s) 482
MboI GATC 1 cut(s) 480
MboII GAAGA 3 cut(s) 103, 141, 515
MfeI CAATTG 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 411, 494
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 2 cut(s) 57, 454
MmeI TCCRAC 1 cut(s) 564
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 4 cut(s) 174, 308, 320, 524
MspR9I CCNGG 3 cut(s) 175, 309, 524
MunI CAATTG 1 cut(s) 411
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 416, 422
NciI CCSGG 3 cut(s) 175, 309, 524
NdeII GATC 1 cut(s) 480
NlaIV GGNNCC 3 cut(s) 31, 43, 558
NruI TCGCGA 1 cut(s) 492
PfeI GAWTC 2 cut(s) 357, 536
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 4 cut(s) 268, 418, 421, 424
PleI GAGTC 2 cut(s) 56, 454
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
PpsI GAGTC 2 cut(s) 56, 454
Ppu21I YACGTR 1 cut(s) 142
PspCI CACGTG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 31, 43, 558
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 419
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 3 cut(s) 31, 80, 371
RsaNI GTAC 3 cut(s) 30, 79, 370
SatI GCNGC 4 cut(s) 267, 417, 420, 423
Sau3AI GATC 1 cut(s) 480
Sau96I GGNCC 1 cut(s) 223
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 2 cut(s) 57, 454
ScrFI CCNGG 3 cut(s) 175, 309, 524
SetI ASST 8 cut(s) 65, 90, 108, 144, 167, 306, 337, 421
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 223
Sse9I AATT 2 cut(s) 411, 494
SsiI CCGC 4 cut(s) 27, 39, 150, 248
SspMI CTAG 3 cut(s) 500, 519, 561
StyD4I CCNGG 3 cut(s) 173, 307, 522
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 3 cut(s) 23, 342, 350
TaiI ACGT 2 cut(s) 108, 144
TaqI TCGA 1 cut(s) 366
TasI AATT 2 cut(s) 411, 494
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 2 cut(s) 357, 536
TscAI CASTG 1 cut(s) 347
TseI GCWGC 4 cut(s) 266, 416, 419, 422
TspDTI ATGAA 1 cut(s) 450
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 3 cut(s) 500, 519, 561
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.