Rroxscaffold_3G00269100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013424
Physical Location & Seq
Forward (+)
62049801 .. 62051314
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269100.1

Sequence Viewer

Length: 585 bp
ATGGCTCTAACAATAGCCAACAGTGGCGGTACCAACGGCGGAGCCAGAGTCCTCTACAGAAGCTCCACCACACACCCGTACACCAACCTCTCCTCCCAACGCCACGTCCTCTTCCCCCTCTCACCCAGAAGAACCCTCCACGTGGTCTCCGCCAAGCGCTTCACCTCCAGAACCGGGAGGCTGGACAACAAGAACAACAACAGTAACAACAAGAGGAGCAACACCACGACCAAAGACCAAGAACAAGACCAACGGACGGCGGAGACTGAAAGCCTCGCTGCCGATAACATTGATGATGGCTACTTCTTGCCTAAGCTTCCGGGAGATGAGCCGGATTTCTGGGAAGGTGAACAGTGGGACGGTCTTGGATTCTTTGTCGAGTACTTGTGGGCTTTTGGTTTTGGCTTTGCGCTTATTGCAGCAATTGCAGCTGCTGCTACATTCAATGAAGGGGCAACTGATTTCAAGGAGACTCCTACTTACAAAGATGCAATCCAGTCTCGCGAATTACTAGAAGAACCAGAGGGTTCTAGCCCGGATGTCTTTGAATCCAACCCAACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.45

Weight (kDa)

4.8

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73885
fragaria_vesca FvH4_5g12290
malus_domestica MD06G1215200.v1.1 MD14G1226000.v1.1
prunus_persica Prupe.5G220500_v2.0.a1
pyrus_communis pycom06g19180 pycom14g18750
rosa_chinensis RchiOBHm_Chr7g0185261
rosa_laevigata RLG00000004926
rosa_multiflora Rmu_co7958283.1_g000001 Rmu_sc0008496.1_g000017
rosa_roxburghii Rroxscaffold_3G00269100
rosa_rugosa Rorug06G0467400
rosa_samantha Rh7AG075600 Rh7BG071900 Rh7CG073100 Rh7DG072500
rosa_wichuraiana Rw7G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 1 cut(s) 504
AciI CCGC 4 cut(s) 27, 39, 150, 260
AcuI CTGAAG 1 cut(s) 582
AcvI CACGTG 1 cut(s) 142
AfaI GTAC 3 cut(s) 31, 80, 383
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 142, 174, 256
AgsI TTSAA 3 cut(s) 445, 466, 548
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 3 cut(s) 63, 316, 431
AluI AGCT 3 cut(s) 63, 316, 431
Alw26I GTCTC 4 cut(s) 151, 257, 464, 504
AlwNI CAGNNNCTG 1 cut(s) 434
Aor51HI AGCGCT 1 cut(s) 158
ApeKI GCWGC 5 cut(s) 278, 419, 428, 431, 434
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 159, 412
AsuC2I CCSGG 3 cut(s) 175, 321, 536
AsuHPI GGTGA 3 cut(s) 114, 154, 359
BanI GGYRCC 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 142
BbvI GCAGC 5 cut(s) 265, 418, 421, 431, 440
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 52, 273
BcnI CCSGG 3 cut(s) 175, 321, 536
BcoDI GTCTC 4 cut(s) 151, 257, 464, 504
BfaI CTAG 3 cut(s) 512, 531, 573
BfmI CTRYAG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 5 cut(s) 279, 420, 429, 432, 435
BlsI GCNGC 5 cut(s) 280, 421, 430, 433, 436
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 175, 321, 536
BmgBI CACGTC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 31, 43, 570
BmrFI CCNGG 3 cut(s) 175, 321, 536
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 3 cut(s) 175, 321, 536
BsaAI YACGTR 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 151
BsaXI ACNNNNNCTCC 8 cut(s) 33, 47, 63, 77, 77, 107, 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 174, 256
Bse1I ACTGG 1 cut(s) 496
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 3 cut(s) 142, 174, 256
BseNI ACTGG 1 cut(s) 496
BseRI GAGGAG 2 cut(s) 82, 229
BseXI GCAGC 5 cut(s) 265, 418, 421, 431, 440
Bsh1236I CGCG 1 cut(s) 504
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 174, 320, 332, 536
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 142, 174, 256
BsmAI GTCTC 4 cut(s) 151, 257, 464, 504
BsmFI GGGAC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 151
Bsp68I TCGCGA 1 cut(s) 504
BspACI CCGC 4 cut(s) 27, 39, 150, 260
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 3 cut(s) 31, 43, 570
BspT107I GGYRCC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 1 cut(s) 496
Bst4CI ACNGT 4 cut(s) 23, 203, 354, 362
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 2 cut(s) 425, 434
BstBAI YACGTR 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 504
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 159, 412
BstMAI GTCTC 4 cut(s) 151, 257, 464, 504
BstMWI GCNNNNNNNGC 4 cut(s) 416, 425, 428, 434
BstSCI CCNGG 3 cut(s) 173, 319, 534
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 5 cut(s) 265, 418, 421, 431, 440
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 28, 359
BtuMI TCGCGA 1 cut(s) 504
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 2 cut(s) 159, 412
Csp6I GTAC 3 cut(s) 30, 79, 382
CspCI CAANNNNNGTGG 2 cut(s) 546, 581
CviQI GTAC 3 cut(s) 30, 79, 382
DdeI CTNAG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 3 cut(s) 54, 139, 275
Eco31I GGTCTC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 582
Eco72I CACGTG 1 cut(s) 142
FaqI GGGAC 1 cut(s) 371
Fnu4HI GCNGC 5 cut(s) 279, 420, 429, 432, 435
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 5 cut(s) 279, 420, 429, 432, 435
FspBI CTAG 3 cut(s) 512, 531, 573
GlaI GCGC 2 cut(s) 158, 411
GluI GCNGC 5 cut(s) 279, 420, 429, 432, 435
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 160
HapII CCGG 4 cut(s) 174, 320, 332, 536
HhaI GCGC 2 cut(s) 159, 412
Hin6I GCGC 2 cut(s) 157, 410
HinP1I GCGC 2 cut(s) 157, 410
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 48, 369, 472, 548
HpaII CCGG 4 cut(s) 174, 320, 332, 536
HphI GGTGA 3 cut(s) 114, 154, 359
Hpy166II GTNNAC 2 cut(s) 81, 350
Hpy188III TCNNGA 2 cut(s) 168, 503
Hpy8I GTNNAC 2 cut(s) 81, 350
HpyAV CCTTC 2 cut(s) 338, 443
HpyCH4III ACNGT 4 cut(s) 23, 203, 354, 362
HpyCH4IV ACGT 2 cut(s) 105, 141
HpyCH4V TGCA 3 cut(s) 419, 428, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 425, 428, 434
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 105, 141
HspAI GCGC 2 cut(s) 157, 410
KpnI GGTACC 1 cut(s) 33
LmnI GCTCC 4 cut(s) 41, 68, 216, 574
Lsp1109I GCAGC 5 cut(s) 265, 418, 421, 431, 440
LweI GCATC 1 cut(s) 478
MaeI CTAG 3 cut(s) 512, 531, 573
MaeII ACGT 2 cut(s) 105, 141
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 3 cut(s) 103, 141, 527
MfeI CAATTG 1 cut(s) 423
MluCI AATT 2 cut(s) 423, 506
MlyI GAGTC 2 cut(s) 57, 466
MmeI TCCRAC 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 4 cut(s) 174, 320, 332, 536
MspR9I CCNGG 3 cut(s) 175, 321, 536
MunI CAATTG 1 cut(s) 423
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 4 cut(s) 416, 425, 428, 434
NciI CCSGG 3 cut(s) 175, 321, 536
NlaIV GGNNCC 3 cut(s) 31, 43, 570
NruI TCGCGA 1 cut(s) 504
PfeI GAWTC 2 cut(s) 369, 548
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 5 cut(s) 280, 421, 430, 433, 436
PleI GAGTC 2 cut(s) 56, 466
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
PpsI GAGTC 2 cut(s) 56, 466
Ppu21I YACGTR 1 cut(s) 142
PspCI CACGTG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 31, 43, 570
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 431
RruI TCGCGA 1 cut(s) 504
RsaI GTAC 3 cut(s) 31, 80, 383
RsaNI GTAC 3 cut(s) 30, 79, 382
SatI GCNGC 5 cut(s) 279, 420, 429, 432, 435
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 2 cut(s) 57, 466
ScrFI CCNGG 3 cut(s) 175, 321, 536
SetI ASST 8 cut(s) 65, 90, 108, 144, 167, 318, 349, 433
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 55
Sse9I AATT 2 cut(s) 423, 506
SsiI CCGC 4 cut(s) 27, 39, 150, 260
SspMI CTAG 3 cut(s) 512, 531, 573
StyD4I CCNGG 3 cut(s) 173, 319, 534
TaaI ACNGT 4 cut(s) 23, 203, 354, 362
TaiI ACGT 2 cut(s) 108, 144
TaqI TCGA 1 cut(s) 378
TasI AATT 2 cut(s) 423, 506
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 2 cut(s) 369, 548
TscAI CASTG 2 cut(s) 28, 359
TseI GCWGC 5 cut(s) 278, 419, 428, 431, 434
TspDTI ATGAA 1 cut(s) 462
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 2 cut(s) 28, 359
XspI CTAG 3 cut(s) 512, 531, 573
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.