Prupe.5G220500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013424
Physical Location & Seq
Reverse (-)
17177198 .. 17179112
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G220500.1

Sequence Viewer

Length: 576 bp
ATGGCTCTAACCATAGCCAACAGTGGAGCTACTGGTGGAGCTAGGCTCCTGTACAGCAGCTCCACCAGTCTCTCCTCTCAACGCCACTTCCTCTTCCCTCTCTCCCCCAGAAGGACCCTCCACGTGGTGTCAGCCAAGAGGTTCACGTCCAGAACTGGGAGGTCCGACGGCAGGAACAAGAGAGGCACCACAACCACCAGAGACCAAGAACAAGACCCACTGCGCCTAGAACGGACGGCTGAGATTGAAAACGTTGGTGGTGGTTTTGCTGTTGACAATGTTGATGATGGGTATTTCTTGCCTAAGCTTCCGGGTGACGAACCTGACTTCTGGGAAGGTGAAAAATGGGACTTTCTTGGCTTCTTTGTCGAGTATTTGTGGGCTTTTGGTATTGGCTTTGCGCTTATTGCTTGTTTCGTTGCTGCTACTTCTTACAATGAAGGAGCAACTGATTTCAAGGAGACTCCTGTGTACAAAGATTCATTCCAGTCTCGGGAGTTTTTGGAAGAACCGGAGGCAACTAACCCAGATGTCTTCGAATCCAACCCAACTGAAGTGGCTCCTAGTTTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.26

Weight (kDa)

4.75

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73885
fragaria_vesca FvH4_5g12290
malus_domestica MD06G1215200.v1.1 MD14G1226000.v1.1
prunus_persica Prupe.5G220500_v2.0.a1
pyrus_communis pycom06g19180 pycom14g18750
rosa_chinensis RchiOBHm_Chr7g0185261
rosa_laevigata RLG00000004926
rosa_multiflora Rmu_co7958283.1_g000001 Rmu_sc0008496.1_g000017
rosa_roxburghii Rroxscaffold_3G00269100
rosa_rugosa Rorug06G0467400
rosa_samantha Rh7AG075600 Rh7BG071900 Rh7CG073100 Rh7DG072500
rosa_wichuraiana Rw7G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AclI AACGTT 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 53, 473
AfiI CCNNNNNNNGG 5 cut(s) 111, 124, 156, 171, 493
AgsI TTSAA 2 cut(s) 248, 457
AjiI CACGTC 1 cut(s) 147
AluBI AGCT 4 cut(s) 29, 41, 60, 307
AluI AGCT 4 cut(s) 29, 41, 60, 307
Alw26I GTCTC 4 cut(s) 74, 195, 455, 495
Ama87I CYCGRG 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 57, 422
AspLEI GCGC 2 cut(s) 225, 403
AspS9I GGNCC 2 cut(s) 114, 162
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 2 cut(s) 326, 350
AsuII TTCGAA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 114, 162
BanI GGYRCC 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 526
BbvI GCAGC 2 cut(s) 69, 409
BccI CCATC 1 cut(s) 281
BceAI ACGGC 2 cut(s) 184, 252
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 4 cut(s) 74, 195, 455, 495
BfaI CTAG 3 cut(s) 42, 227, 564
BisI GCNGC 2 cut(s) 58, 423
BlsI GCNGC 2 cut(s) 59, 424
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 114, 162
BmeT110I CYCGRG 1 cut(s) 492
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 114, 162
BmiI GGNNCC 4 cut(s) 47, 116, 187, 561
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 526
BplI GAGNNNNNCTC 2 cut(s) 30, 62
Bpu10I CCTNAGC 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 511
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 124, 156, 171, 493
Bse1I ACTGG 4 cut(s) 37, 66, 160, 487
BseLI CCNNNNNNNGG 5 cut(s) 111, 124, 156, 171, 493
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 4 cut(s) 37, 66, 160, 487
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 69, 409
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 2 cut(s) 311, 512
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 5 cut(s) 111, 124, 156, 171, 493
BsmAI GTCTC 4 cut(s) 74, 195, 455, 495
BsmFI GGGAC 1 cut(s) 362
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 492
Bsp119I TTCGAA 1 cut(s) 537
Bsp1407I TGTACA 2 cut(s) 51, 471
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 4 cut(s) 47, 116, 187, 561
BspT104I TTCGAA 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 195
BsrGI TGTACA 2 cut(s) 51, 471
BsrI ACTGG 4 cut(s) 37, 66, 160, 487
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 98
BstAUI TGTACA 2 cut(s) 51, 471
BstBAI YACGTR 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 537
BstDEI CTNAG 2 cut(s) 240, 303
BstHHI GCGC 2 cut(s) 225, 403
BstMAI GTCTC 4 cut(s) 74, 195, 455, 495
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 69, 409
BstV2I GAAGAC 1 cut(s) 526
BtrI CACGTC 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 28, 218
CfoI GCGC 2 cut(s) 225, 403
Cfr13I GGNCC 2 cut(s) 114, 162
Csp6I GTAC 2 cut(s) 52, 472
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviQI GTAC 2 cut(s) 52, 472
DdeI CTNAG 2 cut(s) 240, 303
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 114, 162
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 114
FaiI YATR 1 cut(s) 14
FaqI GGGAC 1 cut(s) 362
Fnu4HI GCNGC 2 cut(s) 58, 423
Fsp4HI GCNGC 2 cut(s) 58, 423
FspBI CTAG 3 cut(s) 42, 227, 564
GlaI GCGC 2 cut(s) 224, 402
GluI GCNGC 2 cut(s) 58, 423
HapII CCGG 2 cut(s) 311, 512
HhaI GCGC 2 cut(s) 225, 403
Hin6I GCGC 2 cut(s) 223, 401
HinP1I GCGC 2 cut(s) 223, 401
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 3 cut(s) 463, 479, 539
HpaII CCGG 2 cut(s) 311, 512
HphI GGTGA 2 cut(s) 326, 350
Hpy166II GTNNAC 3 cut(s) 144, 274, 472
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 150, 494
Hpy8I GTNNAC 3 cut(s) 144, 274, 472
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 105, 329, 434
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 3 cut(s) 123, 146, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 240, 303
HpySE526I ACGT 3 cut(s) 123, 146, 252
HspAI GCGC 2 cut(s) 223, 401
LmnI GCTCC 6 cut(s) 26, 38, 51, 65, 443, 565
Lsp1109I GCAGC 2 cut(s) 69, 409
MaeI CTAG 3 cut(s) 42, 227, 564
MaeII ACGT 3 cut(s) 123, 146, 252
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 3 cut(s) 85, 518, 526
MlyI GAGTC 1 cut(s) 457
MmeI TCCRAC 2 cut(s) 189, 567
MnlI CCTC 8 cut(s) 85, 101, 108, 128, 132, 153, 176, 508
MspI CCGG 2 cut(s) 311, 512
MspR9I CCNGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 407
NciI CCSGG 1 cut(s) 312
NlaIV GGNNCC 4 cut(s) 47, 116, 187, 561
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 537
PfeI GAWTC 2 cut(s) 479, 539
PkrI GCNGC 2 cut(s) 59, 424
PleI GAGTC 1 cut(s) 457
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 114
PspCI CACGTG 1 cut(s) 124
PspN4I GGNNCC 4 cut(s) 47, 116, 187, 561
PspPI GGNCC 2 cut(s) 114, 162
PspPPI RGGWCCY 1 cut(s) 114
RsaI GTAC 2 cut(s) 53, 473
RsaNI GTAC 2 cut(s) 52, 472
SatI GCNGC 2 cut(s) 58, 423
Sau96I GGNCC 2 cut(s) 114, 162
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 537
SinI GGWCC 2 cut(s) 114, 162
SspMI CTAG 3 cut(s) 42, 227, 564
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 3 cut(s) 126, 149, 255
TaqI TCGA 2 cut(s) 369, 537
TatI WGTACW 2 cut(s) 51, 471
TfiI GAWTC 2 cut(s) 479, 539
TscAI CASTG 2 cut(s) 28, 225
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 2 cut(s) 57, 422
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 453, 471
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 2 cut(s) 28, 225
VpaK11BI GGWCC 2 cut(s) 114, 162
XspI CTAG 3 cut(s) 42, 227, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.