FvH4_5g12630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015920
Physical Location & Seq
Forward (+)
7121893 .. 7122911
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12630.t1

Sequence Viewer

Length: 282 bp
ATGTTACAAGTGAGACTGAGAAGCAAGAGTCTCAAGTCCACCTGCCGGCGCCGCTTGGAGAAAATCAGAGAGCAGAACAAAATGGTGGTGGGGCGTTCTACGACATGGGCCTACGTCAGAATCATCTCCGGCACCATTCTCGGTGGCGCCCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATCAAAATGATTTGAAGATGAAAGAGGAGAAGGTGAACGAGTTTGCAGAAGAGTCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.09

Weight (kDa)

10.05

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 50
AccB1I GGYRCC 3 cut(s) 48, 131, 146
AciI CCGC 2 cut(s) 52, 172
AcyI GRCGYC 2 cut(s) 49, 147
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 235
Alw26I GTCTC 3 cut(s) 7, 35, 202
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 51, 149
AspS9I GGNCC 2 cut(s) 108, 169
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 169
BanI GGYRCC 3 cut(s) 48, 131, 146
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BcoDI GTCTC 3 cut(s) 7, 35, 202
BfoI RGCGCY 2 cut(s) 52, 150
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 108, 169
BmiI GGNNCC 3 cut(s) 50, 133, 148
BpuEI CTTGAG 1 cut(s) 17
BsaHI GRCGYC 2 cut(s) 49, 147
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 8, 203
BseRI GAGGAG 1 cut(s) 260
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 3 cut(s) 48, 131, 146
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 46, 129
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 3 cut(s) 7, 35, 202
BsnI GGCC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 176
BspACI CCGC 2 cut(s) 52, 172
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 9, 204
BspLI GGNNCC 3 cut(s) 50, 133, 148
BspMI ACCTGC 1 cut(s) 50
BspT107I GGYRCC 3 cut(s) 48, 131, 146
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 151
BssNI GRCGYC 2 cut(s) 49, 147
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 2 cut(s) 49, 147
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 17, 212
BstH2I RGCGCY 2 cut(s) 52, 150
BstHHI GCGC 2 cut(s) 51, 149
BstMAI GTCTC 3 cut(s) 7, 35, 202
BstMWI GCNNNNNNNGC 2 cut(s) 51, 153
BsuRI GGCC 1 cut(s) 110
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 2 cut(s) 51, 149
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 108, 169
CviAII CATG 2 cut(s) 105, 166
CviJI RGCY 2 cut(s) 110, 156
CviKI_1 RGCY 2 cut(s) 110, 156
DdeI CTNAG 2 cut(s) 17, 212
DinI GGCGCC 2 cut(s) 50, 148
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 176
EgeI GGCGCC 2 cut(s) 50, 148
EheI GGCGCC 2 cut(s) 50, 148
FaeI CATG 2 cut(s) 108, 169
FaiI YATR 2 cut(s) 106, 167
FalI AAGNNNNNCTT 1 cut(s) 261
FatI CATG 2 cut(s) 104, 165
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
GlaI GCGC 2 cut(s) 50, 148
GluI GCNGC 1 cut(s) 52
HaeII RGCGCY 2 cut(s) 52, 150
HaeIII GGCC 1 cut(s) 110
HapII CCGG 2 cut(s) 46, 129
HhaI GCGC 2 cut(s) 51, 149
Hin1I GRCGYC 2 cut(s) 49, 147
Hin1II CATG 2 cut(s) 108, 169
Hin6I GCGC 2 cut(s) 49, 147
HinP1I GCGC 2 cut(s) 49, 147
HinfI GANTC 3 cut(s) 28, 120, 272
HpaII CCGG 2 cut(s) 46, 129
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 39, 256
Hpy188I TCNGA 2 cut(s) 68, 119
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 39, 256
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 114, 162
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 153
HpyF3I CTNAG 2 cut(s) 17, 212
HpySE526I ACGT 2 cut(s) 114, 162
Hsp92I GRCGYC 2 cut(s) 49, 147
Hsp92II CATG 2 cut(s) 108, 169
HspAI GCGC 2 cut(s) 49, 147
KasI GGCGCC 2 cut(s) 48, 146
KroI GCCGGC 1 cut(s) 45
KroNI GCCGGC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 55, 59, 142
MaeII ACGT 2 cut(s) 114, 162
MaeIII GTNAC 2 cut(s) 3, 185
MboII GAAGA 3 cut(s) 208, 247, 281
Mly113I GGCGCC 2 cut(s) 49, 147
MlyI GAGTC 2 cut(s) 37, 281
MnlI CCTC 4 cut(s) 161, 185, 207, 238
MroNI GCCGGC 1 cut(s) 45
MspI CCGG 2 cut(s) 46, 129
MwoI GCNNNNNNNGC 2 cut(s) 51, 153
NaeI GCCGGC 1 cut(s) 47
NarI GGCGCC 2 cut(s) 49, 147
NgoMIV GCCGGC 1 cut(s) 45
NlaIII CATG 2 cut(s) 108, 169
NlaIV GGNNCC 3 cut(s) 50, 133, 148
NmeAIII GCCGAG 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 176
PaqCI CACCTGC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 2 cut(s) 36, 280
PluTI GGCGCC 2 cut(s) 52, 150
PpsI GAGTC 2 cut(s) 36, 280
PspN4I GGNNCC 3 cut(s) 50, 133, 148
PspPI GGNCC 2 cut(s) 108, 169
SatI GCNGC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 108, 169
SchI GAGTC 2 cut(s) 37, 281
SetI ASST 4 cut(s) 44, 117, 165, 255
SfoI GGCGCC 2 cut(s) 50, 148
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 32, 176
SmoI CTYRAG 2 cut(s) 32, 176
SsiI CCGC 2 cut(s) 52, 172
SspDI GGCGCC 2 cut(s) 48, 146
TaiI ACGT 2 cut(s) 117, 165
TaqI TCGA 1 cut(s) 177
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 215, 254
VpaK11BI GGWCC 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.