RLG00000004957

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015920
Physical Location & Seq
Forward (+)
63973994 .. 63974588
595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004957

Sequence Viewer

Length: 411 bp
ATGTTACTTTCTCAACCCAATTCAAATCCCAAAGTCACAATACAGCACAAGGCCCACGATTATCTCAGTTCCACTAAAGCTGAAAATGCAACCCGGATCACTGACCCGAGTGGCATGACCCACCCACATTTGATAGTATACAAGTTGGAAGCAGAGTCTAAAGTAAAGTCCACCTCCTGGCGCCGCTTGAGAAAATCAGAGAGGAAAACAATGGTGGTTGGGCGTTCGACGACATGGGCCTACGTCCGAATCATCTCCGGCACCATTCTCGGTGGCGTTCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATGAAAGTGATTTGAAGAAGAAAGAGGAGAAGCTTAATGAATTTGCAGAAGAGTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

9.75

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 180, 260
AccB7I CCANNNNNTGG 1 cut(s) 177
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 184, 301
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 24, 364
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 80, 382
AluI AGCT 2 cut(s) 80, 382
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 106, 305
AoxI GGCC 2 cut(s) 51, 237
ApoI RAATTY 1 cut(s) 389
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 52, 237, 298
AsuC2I CCSGG 1 cut(s) 94
AvaI CYCGRG 2 cut(s) 106, 305
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 2 cut(s) 180, 260
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 94, 178
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 2 cut(s) 106, 305
BmgT120I GGNCC 3 cut(s) 52, 237, 298
BmiI GGNNCC 2 cut(s) 182, 262
BmrFI CCNGG 2 cut(s) 94, 178
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 79, 332
BseRI GAGGAG 1 cut(s) 389
BshFI GGCC 2 cut(s) 53, 239
BshNI GGYRCC 2 cut(s) 180, 260
BsiHKCI CYCGRG 2 cut(s) 106, 305
BsiSI CCGG 2 cut(s) 94, 258
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 2 cut(s) 53, 239
BsoBI CYCGRG 2 cut(s) 106, 305
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 2 cut(s) 184, 301
BspANI GGCC 2 cut(s) 53, 239
BspCNI CTCAG 2 cut(s) 78, 333
BspLI GGNNCC 2 cut(s) 182, 262
BspPI GGATC 1 cut(s) 104
BspT107I GGYRCC 2 cut(s) 180, 260
BssMI GATC 1 cut(s) 96
BssNAI GTATAC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 181
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 65, 341
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 86, 282
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 92, 176
BstSFI CTRYAG 1 cut(s) 407
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 53, 239
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 3 cut(s) 52, 237, 298
CviAII CATG 3 cut(s) 115, 234, 295
CviJI RGCY 5 cut(s) 53, 80, 239, 285, 382
CviKI_1 RGCY 5 cut(s) 53, 80, 239, 285, 382
DdeI CTNAG 2 cut(s) 65, 341
DinI GGCGCC 1 cut(s) 182
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 298
Eco88I CYCGRG 2 cut(s) 106, 305
EcoRII CCWGG 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
FaeI CATG 3 cut(s) 118, 237, 298
FaiI YATR 5 cut(s) 116, 139, 235, 296, 351
FatI CATG 3 cut(s) 114, 233, 294
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 2 cut(s) 53, 239
HapII CCGG 2 cut(s) 94, 258
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 118, 237, 298
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 155, 249, 401
HpaII CCGG 2 cut(s) 94, 258
Hpy166II GTNNAC 2 cut(s) 139, 171
Hpy188I TCNGA 2 cut(s) 199, 248
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 139, 171
Hpy99I CGWCG 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 243, 291
HpyCH4V TGCA 2 cut(s) 89, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 282
HpyF3I CTNAG 2 cut(s) 65, 341
HpySE526I ACGT 2 cut(s) 243, 291
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 118, 237, 298
HspAI GCGC 1 cut(s) 181
KasI GGCGCC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 4 cut(s) 107, 163, 190, 271
MaeII ACGT 2 cut(s) 243, 291
MaeIII GTNAC 3 cut(s) 3, 34, 314
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 4 cut(s) 337, 376, 379, 410
MluCI AATT 2 cut(s) 19, 389
Mly113I GGCGCC 1 cut(s) 181
MlyI GAGTC 2 cut(s) 164, 410
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 184, 195, 314, 336, 367
MseI TTAA 1 cut(s) 384
MspI CCGG 2 cut(s) 94, 258
MspR9I CCNGG 2 cut(s) 94, 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 86, 282
NarI GGCGCC 1 cut(s) 181
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 96
NlaIII CATG 3 cut(s) 118, 237, 298
NlaIV GGNNCC 2 cut(s) 182, 262
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 2 cut(s) 163, 409
PluTI GGCGCC 1 cut(s) 184
PpsI GAGTC 2 cut(s) 163, 409
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 182, 262
PspPI GGNCC 3 cut(s) 52, 237, 298
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 3 cut(s) 52, 237, 298
SchI GAGTC 2 cut(s) 164, 410
ScrFI CCNGG 2 cut(s) 94, 178
SetI ASST 5 cut(s) 82, 176, 246, 294, 384
SfcI CTRYAG 1 cut(s) 407
SfoI GGCGCC 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 187, 305
SmoI CTYRAG 2 cut(s) 187, 305
Sse9I AATT 2 cut(s) 19, 389
SsiI CCGC 2 cut(s) 184, 301
SspDI GGCGCC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 92, 176
TaiI ACGT 2 cut(s) 246, 294
TaqI TCGA 2 cut(s) 227, 306
TasI AATT 2 cut(s) 19, 389
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 344, 366, 402
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.