Rh7AG078300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
5587651 .. 5588019
369 bp
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UTR
Exon/CDS
Intron
Rh7AG078300.1

Sequence Viewer

Length: 201 bp
ATGGTTGTTGGGCGTTCTACGACATGGGCCTACGTCCGAATCATCTCCGGCACCATTCTCGGTGGCGTTCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATGAAAGTGATTTGAAGAAGAAAGAGGAGAAGCTTAATGAATTTGCAGAAGAGTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.76

Weight (kDa)

8.96

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 179
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 27, 88
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 27, 88
BmiI GGNNCC 1 cut(s) 52
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 95
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 27, 88
CviAII CATG 2 cut(s) 24, 85
CviJI RGCY 3 cut(s) 29, 75, 172
CviKI_1 RGCY 3 cut(s) 29, 75, 172
DdeI CTNAG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 95
FaeI CATG 2 cut(s) 27, 88
FaiI YATR 3 cut(s) 25, 86, 141
FatI CATG 2 cut(s) 23, 84
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 48
Hin1II CATG 2 cut(s) 27, 88
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 39, 191
HpaII CCGG 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 33, 81
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 33, 81
Hsp92II CATG 2 cut(s) 27, 88
LpnPI CCDG 1 cut(s) 61
MaeII ACGT 2 cut(s) 33, 81
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 4 cut(s) 127, 166, 169, 200
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 3 cut(s) 104, 126, 157
MseI TTAA 1 cut(s) 174
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 2 cut(s) 27, 88
NlaIV GGNNCC 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 1 cut(s) 39
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 27, 88
SaqAI TTAA 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 27, 88
SchI GAGTC 1 cut(s) 200
SetI ASST 3 cut(s) 36, 84, 174
SfcI CTRYAG 1 cut(s) 197
Sfr274I CTCGAG 1 cut(s) 95
SgeI CNNG 9 cut(s) 36, 60, 71, 83, 97, 107, 109, 121, 136
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 179
SsiI CCGC 1 cut(s) 91
TaiI ACGT 2 cut(s) 36, 84
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 179
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 134, 156, 192
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.