RchiOBHm_Chr7g0184711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015920
Physical Location & Seq
Reverse (-)
5166766 .. 5167377
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16480

Sequence Viewer

Length: 273 bp
ATGGTATACAAGTTAGAAGCAGGGTGTAAAGTAAAGTCCACCTCCCGGCGCCGCTTGAGAAAATCAGAGAGGAAAACAATGGTGGTTGGGCGTTCTACGACATGGGCCTACGTCCGAATCATCTCCGGCACCATTCTCGGTGGCGTTCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATGAAAGTGATTTGAAGAAGAAAGAGGAGAAGCTTAATGAATTTGCGGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.66

Weight (kDa)

9.91

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 48, 128
AccI GTMKAC 1 cut(s) 6
AciI CCGC 3 cut(s) 52, 169, 263
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 105, 166
AsuC2I CCSGG 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 48, 128
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 105, 166
BmiI GGNNCC 2 cut(s) 50, 130
BmrFI CCNGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 2 cut(s) 48, 128
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 46, 126
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 173
BspACI CCGC 3 cut(s) 52, 169, 263
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 50, 130
BspT107I GGYRCC 2 cut(s) 48, 128
BssNAI GTATAC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 49
Bst1107I GTATAC 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 44
BstZ17I GTATAC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 107
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 105, 166
CviAII CATG 2 cut(s) 102, 163
CviJI RGCY 3 cut(s) 107, 153, 250
CviKI_1 RGCY 3 cut(s) 107, 153, 250
DdeI CTNAG 1 cut(s) 209
DinI GGCGCC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaeI CATG 2 cut(s) 105, 166
FaiI YATR 4 cut(s) 7, 103, 164, 219
FatI CATG 2 cut(s) 101, 162
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 46, 126
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 2 cut(s) 105, 166
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 117
HpaII CCGG 2 cut(s) 46, 126
Hpy166II GTNNAC 2 cut(s) 7, 39
Hpy188I TCNGA 2 cut(s) 67, 116
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 7, 39
HpyCH4IV ACGT 2 cut(s) 111, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 2 cut(s) 111, 159
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 2 cut(s) 105, 166
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
LpnPI CCDG 3 cut(s) 6, 59, 139
MaeII ACGT 2 cut(s) 111, 159
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 3 cut(s) 205, 244, 247
MluCI AATT 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 49
MnlI CCTC 5 cut(s) 52, 63, 182, 204, 235
MseI TTAA 1 cut(s) 252
MspI CCGG 2 cut(s) 46, 126
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 150
NarI GGCGCC 1 cut(s) 49
NciI CCSGG 1 cut(s) 46
NlaIII CATG 2 cut(s) 105, 166
NlaIV GGNNCC 2 cut(s) 50, 130
NmeAIII GCCGAG 1 cut(s) 129
PaeR7I CTCGAG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 53
PluTI GGCGCC 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 50, 130
PspPI GGNCC 2 cut(s) 105, 166
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 105, 166
ScrFI CCNGG 1 cut(s) 46
SetI ASST 4 cut(s) 44, 114, 162, 252
SfoI GGCGCC 1 cut(s) 50
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 55, 173
SmoI CTYRAG 2 cut(s) 55, 173
Sse9I AATT 1 cut(s) 257
SsiI CCGC 3 cut(s) 52, 169, 263
SspDI GGCGCC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 44
TaiI ACGT 2 cut(s) 114, 162
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 257
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TspDTI ATGAA 3 cut(s) 212, 234, 270
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.