Rmu_ssc0000289.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0015920
Physical Location & Seq
Forward (+)
107176 .. 108339
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000021.1.cds

Sequence Viewer

Length: 600 bp
atggtatacaagttagaagcagggtgtagagtagagtccacctcctggcgccgcttgagaaaatcagagaggaaaacaatggtggttgggcgttctacgacatgggcctacgtccgaatcatctccggcaccattctcggtggcgttctcggcttctacgtcatggaccgcctcgagaaaagttacaaggagaagatgaacgagagactgaggaagtatgaaagtgatttgaagaagaaagaggagaagcttaatcattccactagagctgaaattgcaacccggatcactgacccgactggcataacccacccacatttgatggtatacaagttagaagcagggtgtaaagtaaagtccacctcctggcgccgcttgagaaaatcagagaggaaaacaatggttgttgggcgttctacgacatgggcctacgtccgaatcatctccggcaccattctcggtggcgttctcggcttctacgtcatggaccgcctcgagaaaagttacaaggagaagatgaacgagagactgaggaagtatgaaagtgatttgaagaagaaagaggagaagcttaatgaatttgcagaagagtctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.39

Weight (kDa)

9.95

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18510
fragaria_vesca FvH4_5g12630
malus_domestica MD06G1212000.v1.1 MD14G1222600.v1.1
pyrus_communis pycom14g18430
rosa_chinensis RchiOBHm_Chr7g0184711
rosa_laevigata RLG00000004957
rosa_multiflora Rmu_ssc0000289.1_g000021
rosa_roxburghii Rroxscaffold_3G00269410
rosa_rugosa Rorug06G0464600
rosa_samantha Rh7AG078300 Rh7BG069000 Rh7CG069800 Rh7DG069200
rosa_wichuraiana Rw7G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 48, 128, 369, 449
AccB7I CCANNNNNTGG 2 cut(s) 45, 366
AccI GTMKAC 2 cut(s) 6, 327
AciI CCGC 4 cut(s) 52, 169, 373, 490
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 1 cut(s) 578
AcyI GRCGYC 2 cut(s) 49, 370
AfiI CCNNNNNNNGG 2 cut(s) 45, 366
AgsI TTSAA 2 cut(s) 232, 553
AjnI CCWGG 2 cut(s) 44, 365
AluBI AGCT 3 cut(s) 250, 269, 571
AluI AGCT 3 cut(s) 250, 269, 571
Alw26I GTCTC 2 cut(s) 199, 520
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 2 cut(s) 173, 494
AoxI GGCC 2 cut(s) 105, 426
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 2 cut(s) 51, 372
AspS9I GGNCC 4 cut(s) 105, 166, 426, 487
AsuC2I CCSGG 1 cut(s) 283
AvaI CYCGRG 2 cut(s) 173, 494
AvaII GGWCC 2 cut(s) 166, 487
BanI GGYRCC 4 cut(s) 48, 128, 369, 449
BccI CCATC 1 cut(s) 316
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 439, 473
BciT130I CCWGG 2 cut(s) 46, 367
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 2 cut(s) 199, 520
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 596
BfoI RGCGCY 2 cut(s) 52, 373
BisI GCNGC 2 cut(s) 52, 373
BlsI GCNGC 2 cut(s) 53, 374
Bme1390I CCNGG 3 cut(s) 46, 283, 367
Bme18I GGWCC 2 cut(s) 166, 487
BmeT110I CYCGRG 2 cut(s) 173, 494
BmgT120I GGNCC 4 cut(s) 105, 166, 426, 487
BmiI GGNNCC 4 cut(s) 50, 130, 371, 451
BmrFI CCNGG 3 cut(s) 46, 283, 367
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuEI CTTGAG 2 cut(s) 76, 397
BpuMI CCSGG 1 cut(s) 283
BsaHI GRCGYC 2 cut(s) 49, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 366
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 46, 367
BseLI CCNNNNNNNGG 2 cut(s) 45, 366
BseMII CTCAG 2 cut(s) 200, 521
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 257, 578
BshFI GGCC 2 cut(s) 107, 428
BshNI GGYRCC 4 cut(s) 48, 128, 369, 449
BsiHKCI CYCGRG 2 cut(s) 173, 494
BsiSI CCGG 3 cut(s) 126, 283, 447
BslI CCNNNNNNNGG 2 cut(s) 45, 366
BsmAI GTCTC 2 cut(s) 199, 520
BsnI GGCC 2 cut(s) 107, 428
BsoBI CYCGRG 2 cut(s) 173, 494
Bsp143I GATC 1 cut(s) 285
BspACI CCGC 4 cut(s) 52, 169, 373, 490
BspANI GGCC 2 cut(s) 107, 428
BspCNI CTCAG 2 cut(s) 201, 522
BspLI GGNNCC 4 cut(s) 50, 130, 371, 451
BspPI GGATC 1 cut(s) 293
BspT107I GGYRCC 4 cut(s) 48, 128, 369, 449
BsrI ACTGG 1 cut(s) 304
BssMI GATC 1 cut(s) 285
BssNAI GTATAC 2 cut(s) 7, 328
BssNI GRCGYC 2 cut(s) 49, 370
Bst1107I GTATAC 2 cut(s) 7, 328
Bst2UI CCWGG 2 cut(s) 46, 367
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 2 cut(s) 49, 370
BstDEI CTNAG 2 cut(s) 209, 530
BstH2I RGCGCY 2 cut(s) 52, 373
BstHHI GCGC 2 cut(s) 51, 372
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 2 cut(s) 199, 520
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 3 cut(s) 150, 275, 471
BstNI CCWGG 2 cut(s) 46, 367
BstSCI CCNGG 3 cut(s) 44, 281, 365
BstSFI CTRYAG 1 cut(s) 596
BstZ17I GTATAC 2 cut(s) 7, 328
BsuRI GGCC 2 cut(s) 107, 428
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 2 cut(s) 51, 372
Cfr13I GGNCC 4 cut(s) 105, 166, 426, 487
CviAII CATG 4 cut(s) 102, 163, 423, 484
CviJI RGCY 7 cut(s) 107, 153, 250, 269, 428, 474, 571
CviKI_1 RGCY 7 cut(s) 107, 153, 250, 269, 428, 474, 571
DdeI CTNAG 2 cut(s) 209, 530
DinI GGCGCC 2 cut(s) 50, 371
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 166, 487
Eco88I CYCGRG 2 cut(s) 173, 494
EcoRII CCWGG 2 cut(s) 44, 365
EgeI GGCGCC 2 cut(s) 50, 371
EheI GGCGCC 2 cut(s) 50, 371
FaeI CATG 4 cut(s) 105, 166, 426, 487
FaiI YATR 9 cut(s) 7, 103, 164, 219, 305, 328, 424, 485, 540
FatI CATG 4 cut(s) 101, 162, 422, 483
FblI GTMKAC 2 cut(s) 6, 327
Fnu4HI GCNGC 2 cut(s) 52, 373
Fsp4HI GCNGC 2 cut(s) 52, 373
FspBI CTAG 1 cut(s) 264
GlaI GCGC 2 cut(s) 50, 371
GluI GCNGC 2 cut(s) 52, 373
HaeII RGCGCY 2 cut(s) 52, 373
HaeIII GGCC 2 cut(s) 107, 428
HapII CCGG 3 cut(s) 126, 283, 447
HhaI GCGC 2 cut(s) 51, 372
Hin1I GRCGYC 2 cut(s) 49, 370
Hin1II CATG 4 cut(s) 105, 166, 426, 487
Hin6I GCGC 2 cut(s) 49, 370
HinP1I GCGC 2 cut(s) 49, 370
HindIII AAGCTT 2 cut(s) 248, 569
HinfI GANTC 4 cut(s) 35, 117, 438, 590
HpaII CCGG 3 cut(s) 126, 283, 447
Hpy166II GTNNAC 4 cut(s) 7, 39, 328, 360
Hpy188I TCNGA 4 cut(s) 67, 116, 388, 437
Hpy188III TCNNGA 2 cut(s) 175, 496
Hpy8I GTNNAC 4 cut(s) 7, 39, 328, 360
HpyCH4IV ACGT 4 cut(s) 111, 159, 432, 480
HpyCH4V TGCA 2 cut(s) 278, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 275, 471
HpyF3I CTNAG 2 cut(s) 209, 530
HpySE526I ACGT 4 cut(s) 111, 159, 432, 480
Hsp92I GRCGYC 2 cut(s) 49, 370
Hsp92II CATG 4 cut(s) 105, 166, 426, 487
HspAI GCGC 2 cut(s) 49, 370
KasI GGCGCC 2 cut(s) 48, 369
Kzo9I GATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 264
MaeII ACGT 4 cut(s) 111, 159, 432, 480
MaeIII GTNAC 2 cut(s) 182, 503
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 7 cut(s) 205, 244, 247, 526, 565, 568, 599
MluCI AATT 2 cut(s) 273, 578
Mly113I GGCGCC 2 cut(s) 49, 370
MlyI GAGTC 2 cut(s) 44, 599
MseI TTAA 2 cut(s) 252, 573
MspI CCGG 3 cut(s) 126, 283, 447
MspR9I CCNGG 3 cut(s) 46, 283, 367
MvaI CCWGG 2 cut(s) 46, 367
MwoI GCNNNNNNNGC 3 cut(s) 150, 275, 471
NarI GGCGCC 2 cut(s) 49, 370
NciI CCSGG 1 cut(s) 283
NdeII GATC 1 cut(s) 285
NlaIII CATG 4 cut(s) 105, 166, 426, 487
NlaIV GGNNCC 4 cut(s) 50, 130, 371, 451
NmeAIII GCCGAG 2 cut(s) 129, 450
PaeR7I CTCGAG 2 cut(s) 173, 494
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 477
PfeI GAWTC 2 cut(s) 117, 438
PflMI CCANNNNNTGG 2 cut(s) 45, 366
PkrI GCNGC 2 cut(s) 53, 374
PleI GAGTC 2 cut(s) 43, 598
PluTI GGCGCC 2 cut(s) 52, 373
PpsI GAGTC 2 cut(s) 43, 598
Psp6I CCWGG 2 cut(s) 44, 365
PspGI CCWGG 2 cut(s) 44, 365
PspN4I GGNNCC 4 cut(s) 50, 130, 371, 451
PspPI GGNCC 4 cut(s) 105, 166, 426, 487
SaqAI TTAA 2 cut(s) 252, 573
SatI GCNGC 2 cut(s) 52, 373
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 4 cut(s) 105, 166, 426, 487
SchI GAGTC 2 cut(s) 44, 599
ScrFI CCNGG 3 cut(s) 46, 283, 367
SetI ASST 9 cut(s) 44, 114, 162, 252, 271, 365, 435, 483, 573
SfcI CTRYAG 1 cut(s) 596
SfoI GGCGCC 2 cut(s) 50, 371
Sfr274I CTCGAG 2 cut(s) 173, 494
SinI GGWCC 2 cut(s) 166, 487
SlaI CTCGAG 2 cut(s) 173, 494
SmlI CTYRAG 4 cut(s) 55, 173, 376, 494
SmoI CTYRAG 4 cut(s) 55, 173, 376, 494
Sse9I AATT 2 cut(s) 273, 578
SsiI CCGC 4 cut(s) 52, 169, 373, 490
SspDI GGCGCC 2 cut(s) 48, 369
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 3 cut(s) 44, 281, 365
TaiI ACGT 4 cut(s) 114, 162, 435, 483
TaqI TCGA 2 cut(s) 174, 495
TasI AATT 2 cut(s) 273, 578
TauI GCSGC 2 cut(s) 54, 375
TfiI GAWTC 2 cut(s) 117, 438
Tru1I TTAA 2 cut(s) 252, 573
Tru9I TTAA 2 cut(s) 252, 573
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 5 cut(s) 212, 234, 533, 555, 591
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 2 cut(s) 45, 366
VpaK11BI GGWCC 2 cut(s) 166, 487
XapI RAATTY 1 cut(s) 578
XhoI CTCGAG 2 cut(s) 173, 494
XmiI GTMKAC 2 cut(s) 6, 327
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.